BLAST/PSIBLAST alignment of GI: 254780916 and GI: 86359139 at iteration 1
>gi|86359139|ref|YP_471031.1| sigma-54-dependent transcriptional regulator (activator) protein [Rhizobium etli CFN 42] Length = 513
>gi|86283241|gb|ABC92304.1| sigma-54-dependent transcriptional regulator (activator) protein [Rhizobium etli CFN 42] Length = 513
Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 178/505 (35%), Positives = 292/505 (57%), Gaps = 44/505 (8%)
Query: 12 RVLIIDKDDEQIKIIKDHVESYGYDVFIVNVSDLSTISKIQV-------NVIFLSLINCE 64
++L+++ D Q +++K+ +E +G+ +V+ ++ I V NVI L L+ E
Sbjct: 12 QILVVEDDPVQRRLLKNAIERHGH---VVHQAENGRIGLEMVKRDSGLFNVIVLDLMMPE 68
Query: 65 DDKENILKNIVDKIPIVPIIVQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSIICAL 124
L + + +P+IVQT Q I+ + + F + VS +++ SI A+
Sbjct: 69 MTGLEFLDALHEFGTQIPVIVQTGQGGIETVVQAMRAGAFDFVVKPVSPERIATSISNAM 128
Query: 125 R--EGVVPSQENEHC-----ALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKK 177
+ + V ++ D +++ SPAMI+V+DLA++A IP++++GE GVGK+
Sbjct: 129 KLDQREVKARAGRRSRAGSVGFDDIVSASPAMIRVIDLAQRAAQSNIPVVLEGESGVGKE 188
Query: 178 RLSRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFG-DVDLQTKNSAQFLGKFIEANGGT 236
++R I G+R+ PF VNCG I + +E LFG + T + + +GKF+EA+GGT
Sbjct: 189 LVARAIQSGGERSNKPFVTVNCGAIPHNLVESILFGHEKGAFTGATERHIGKFMEADGGT 248
Query: 237 IVLEEPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRK 296
I L+E LPL VQ ++ ++ G+IE +R A +++VRLI T K+L+ +VK+ FR+
Sbjct: 249 IFLDEIGDLPLEVQVKLLRAVQQGEIETVGARTAHKVNVRLISATNKDLIEEVKNGHFRE 308
Query: 297 DLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCT--KNAIKQISISDKALSLLTKYPW 354
DLYYR++VF I I LR R EDIP LV F F + KN ++++++ AL+LLT Y W
Sbjct: 309 DLYYRLNVFPITIPALRKRKEDIPHLVRVFADRFSSEQKNG-RRMTVNSGALALLTAYDW 367
Query: 355 IDNVQELKNILLRAVIGLKDSHLTE----------------DRFVLLLSREGKKEREFHT 398
N+++L+N + RAV+ + LTE D L+ G + E ++
Sbjct: 368 PGNIRQLENAIFRAVVLAEGPELTEADFPQIAAQLPEYEVVDHLALVADNTGLEPDEAYS 427
Query: 399 ET--ACTCYTEGKSSDTILDNLSQESIPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQMSE 456
E A T + + S+T S+ +I ++ G+VR+L+D+E+E+I A+K YR QMS+
Sbjct: 428 EEYRAPTEFHHHRLSET-----SENAIASVNPSGDVRKLADVEEELIRFALKFYRGQMSQ 482
Query: 457 VARRLGIGRSTLYRKIREYNIEVDS 481
VAR+LGIGRSTLYRK+++Y I+ D+
Sbjct: 483 VARKLGIGRSTLYRKLKDYGIDPDN 507