RPSBLAST alignment for GI: 254780916 and conserved domain: pfam00158

>gnl|CDD|143926 pfam00158, Sigma54_activat, Sigma-54 interaction domain. Length = 168

 Score =  130 bits (331), Expect = 6e-31
 Identities = 62/171 (36%), Positives = 94/171 (54%), Gaps = 9/171 (5%)

Query: 142 LIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGKRAFFPFFIVNCGM 201
           LI  SPAM +V++LA++       ++I GE G GK+  +R IH+   RA  PF  VNC  
Sbjct: 1   LIGESPAMQEVLELAKRVAPTDATVLITGESGTGKELFARAIHQLSPRADGPFVAVNCAA 60

Query: 202 IDQDKIEKFLFGDVDLQTKNS-----AQFLGKFIEANGGTIVLEEPDALPLAVQGRIYNF 256
           I ++ +E  LFG      K +     +   G F  A+GGT+ L+E   LPL +Q ++   
Sbjct: 61  IPEELLESELFGHE----KGAFTGAVSDRKGLFELADGGTLFLDEIGELPLELQAKLLRV 116

Query: 257 IETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVFLI 307
           ++ G+ E       I++DVR+I  T ++L   V    FR+DLYYR++V  I
Sbjct: 117 LQEGEFERVGGTKPIKVDVRIIAATNRDLEEAVAEGRFREDLYYRLNVVPI 167