RPSBLAST alignment for GI: 254780916 and conserved domain: TIGR01818

>gnl|CDD|162545 TIGR01818, ntrC, nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. Length = 463

 Score =  158 bits (402), Expect = 3e-39
 Identities = 129/478 (26%), Positives = 228/478 (47%), Gaps = 32/478 (6%)

Query: 13  VLIIDKDDEQIK-IIKDHVESYGYDV--FIVNVSDLSTISKIQVNVIFLSLINCEDDKEN 69
           V ++D DD  I+ +++  +   GY+V  F    S L  +++ Q +++   +    +D  +
Sbjct: 1   VWVVD-DDRSIRWVLEKALSRAGYEVRTFGNAASVLRALARGQPDLLITDVRMPGEDGLD 59

Query: 70  ILKNIVDKIPIVPIIVQTTQ-DNIKILNCF---LYNRISKFF-----LNLVSRKQLCDSI 120
           +L  I  + P +P+IV T   D    +  +    +  + K F     + LV R     ++
Sbjct: 60  LLPQIKKRHPQLPVIVMTAHSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVER-----AL 114

Query: 121 ICALREGVVPSQENEHCALDSLIAVSPAMIQVVD-LARKAGDCAIPIMIQGEFGVGKKRL 179
             A  +  +P+   E      LI  +PAM +V   + R +    I ++I GE G GK+ +
Sbjct: 115 AHAQEQVALPADAGEAEDSAELIGEAPAMQEVFRAIGRLSRS-DITVLINGESGTGKELV 173

Query: 180 SRFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFG-DVDLQTKNSAQFLGKFIEANGGTIV 238
           +R +H    RA  PF  +N   I +D IE  LFG +    T  + +  G+F +A+GGT+ 
Sbjct: 174 ARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLF 233

Query: 239 LEEPDALPLAVQGRIYNFIETGKIEFF--DSRGAIRLDVRLIFLTEKNLLPQVKSHVFRK 296
           L+E   +PL  Q R+   +  G  EF+    R  I++DVR++  T +NL   V+   FR+
Sbjct: 234 LDEIGDMPLDAQTRLLRVLADG--EFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFRE 291

Query: 297 DLYYRISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWID 356
           DL++R++V  I++  LR R EDIP L   FL     +  ++   +  +AL  L +  W  
Sbjct: 292 DLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPG 351

Query: 357 NVQELKNILLRAVIGLKDSHLTEDRFVLLLSREGKKEREFHTETACTCYTEGKSSDTILD 416
           NV++L+N+     +      +        L+  G+      ++          S D  L+
Sbjct: 352 NVRQLENLCRWLTVMASGDEVLVSDLPAELALTGRPASAPDSDG-------QDSWDEALE 404

Query: 417 NLSQESIPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQMSEVARRLGIGRSTLYRKIRE 474
             +++++    Q    R L + E+ ++  A++  R    E A  LG GR+TL RK++E
Sbjct: 405 AWAKQALSRGEQGLLDRALPEFERPLLEAALQHTRGHKQEAAALLGWGRNTLTRKLKE 462