RPSBLAST alignment for GI: 254780916 and conserved domain: COG4650

>gnl|CDD|34269 COG4650, RtcR, Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]. Length = 531

 Score = 67.4 bits (164), Expect = 9e-12
 Identities = 72/261 (27%), Positives = 111/261 (42%), Gaps = 13/261 (4%)

Query: 132 QENEHCALDSLIAV-SPAMIQVVD-LARKAGDCAIPIMIQGEFGVGKKRLSRFIHESGK- 188
           +E     L S IA  +P   ++++ + R A     PI++ G  G GK  L+R I+E  + 
Sbjct: 175 REQTLDFLKSGIATRNPHFNRMIEQIERVAIRSRAPILLNGPTGAGKSFLARRIYELKQA 234

Query: 189 RAFF--PFFIVNCGMIDQDKIEKFLFGDVDLQ-TKNSAQFLGKFIEANGGTIVLEEPDAL 245
           R  F   F  VNC  +  D     LFG V    T       G    A+GG + L+E   L
Sbjct: 235 RHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLFLDEIGEL 294

Query: 246 PLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYYRISVF 305
               Q  +   IE  +   F S   +  D +LI  T ++L   V    FR+DLY RI+++
Sbjct: 295 GADEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLW 354

Query: 306 LINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKA----LSLLT--KYPWIDNVQ 359
              +  LR R EDI   + + L+   +      +  + +A    L+  T  +  W  N +
Sbjct: 355 TFTLPGLRQRQEDIEPNLDYELERHASLTG-DSVRFNTEARRAWLAFATSPQATWRGNFR 413

Query: 360 ELKNILLRAVIGLKDSHLTED 380
           EL   + R         +T D
Sbjct: 414 ELSASVTRMATLADSGRITLD 434