BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780916|ref|YP_003065329.1| putative sigma-54-dependent
transcription regulator protein [Candidatus Liberibacter asiaticus
str. psy62]
         (482 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780916|ref|YP_003065329.1| putative sigma-54-dependent transcription regulator protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 482

 Score =  976 bits (2524), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/482 (100%), Positives = 482/482 (100%)

Query: 1   MPRKKSLDRHKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVSDLSTISKIQVNVIFLSL 60
           MPRKKSLDRHKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVSDLSTISKIQVNVIFLSL
Sbjct: 1   MPRKKSLDRHKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVSDLSTISKIQVNVIFLSL 60

Query: 61  INCEDDKENILKNIVDKIPIVPIIVQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSI 120
           INCEDDKENILKNIVDKIPIVPIIVQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSI
Sbjct: 61  INCEDDKENILKNIVDKIPIVPIIVQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSI 120

Query: 121 ICALREGVVPSQENEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLS 180
           ICALREGVVPSQENEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLS
Sbjct: 121 ICALREGVVPSQENEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLS 180

Query: 181 RFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGTIVLE 240
           RFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGTIVLE
Sbjct: 181 RFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGTIVLE 240

Query: 241 EPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYY 300
           EPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYY
Sbjct: 241 EPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYY 300

Query: 301 RISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQE 360
           RISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQE
Sbjct: 301 RISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQE 360

Query: 361 LKNILLRAVIGLKDSHLTEDRFVLLLSREGKKEREFHTETACTCYTEGKSSDTILDNLSQ 420
           LKNILLRAVIGLKDSHLTEDRFVLLLSREGKKEREFHTETACTCYTEGKSSDTILDNLSQ
Sbjct: 361 LKNILLRAVIGLKDSHLTEDRFVLLLSREGKKEREFHTETACTCYTEGKSSDTILDNLSQ 420

Query: 421 ESIPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQMSEVARRLGIGRSTLYRKIREYNIEVD 480
           ESIPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQMSEVARRLGIGRSTLYRKIREYNIEVD
Sbjct: 421 ESIPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQMSEVARRLGIGRSTLYRKIREYNIEVD 480

Query: 481 SL 482
           SL
Sbjct: 481 SL 482


>gi|254781206|ref|YP_003065619.1| hypothetical protein CLIBASIA_05565 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1246

 Score = 28.1 bits (61), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 12/86 (13%)

Query: 57  FLSLINCEDDKENILKNIVDKIPIVPIIVQTTQDNIKILNCFLYNRISK---FFLNLVSR 113
           F+ ++  ED+ + I K + D +      +++TQ+NI+ +   L N   K    FL L  +
Sbjct: 123 FMDMVETEDEHK-INKQVRDALESAGFDLESTQENIRKVESALINNNMKDAFRFLELAQK 181

Query: 114 -KQLCDSII-------CALREGVVPS 131
            K+  DS I         L+E   P+
Sbjct: 182 SKETADSHIIEAIDVGTKLKENTPPT 207


>537021.9.peg.472_1 
          Length = 369

 Score = 26.6 bits (57), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 149 MIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHES 186
           MI+ +  A K+G  A   M+ G  G+GK   +R I  S
Sbjct: 7   MIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARS 44


>gi|254781158|ref|YP_003065571.1| peptidyl prolyl cis-trans isomerase D signal peptide protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 631

 Score = 25.8 bits (55), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 11/24 (45%), Positives = 16/24 (66%)

Query: 373 KDSHLTEDRFVLLLSREGKKEREF 396
           KD+  + D FV  L+REG  E+E+
Sbjct: 128 KDNKFSHDVFVSRLAREGINEKEY 151


>gi|254780799|ref|YP_003065212.1| DNA translocase FtsK [Candidatus Liberibacter asiaticus str. psy62]
          Length = 806

 Score = 25.0 bits (53), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 19/28 (67%)

Query: 437 DIEKEIIGLAMKLYRAQMSEVARRLGIG 464
           D+ K+ + + ++  +A +S + RRLGIG
Sbjct: 741 DLYKQAVDIVLRDNKASISYIQRRLGIG 768


>gi|255764468|ref|YP_003064806.2| permease protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 361

 Score = 25.0 bits (53), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 7/56 (12%)

Query: 398 TETACTCYTEGKSSDTILDNLSQESIPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQ 453
           T+T    Y +  S D     L +++I  I  DGEV R S I K+I  +  K Y  Q
Sbjct: 181 TQTHKIYYAQSGSID-----LDRQAI--ILNDGEVHRKSPISKDISIMKFKSYTLQ 229


>gi|254780499|ref|YP_003064912.1| hypothetical protein CLIBASIA_01930 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 167

 Score = 25.0 bits (53), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 6/32 (18%)

Query: 228 KFIEANGGT------IVLEEPDALPLAVQGRI 253
           KF+  NG T      +V+ EPD LP +  G I
Sbjct: 100 KFLYPNGDTSGKKNVVVIREPDILPFSEDGVI 131


>gi|254780476|ref|YP_003064889.1| two component response regulator [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 123

 Score = 24.3 bits (51), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 8/25 (32%), Positives = 19/25 (76%)

Query: 11 KRVLIIDKDDEQIKIIKDHVESYGY 35
          K+V+I++ ++  +K+ +D +E+ GY
Sbjct: 3  KKVMIVEDNELNMKLFRDLIETSGY 27


>gi|254780632|ref|YP_003065045.1| hypothetical protein CLIBASIA_02595 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 71

 Score = 23.5 bits (49), Expect = 7.6,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 29/49 (59%), Gaps = 2/49 (4%)

Query: 110 LVSRKQLCDSIICALREGVVPSQENEHCAL-DSLIAVSPAMIQVVDLAR 157
           +++  +  +S++ + R  + P+ + + C L  S++AV P +  + D+AR
Sbjct: 1   MINGPETLESLMVSFRVDMSPAVQLQ-CGLGSSIVAVKPVVPYITDVAR 48


>gi|254780523|ref|YP_003064936.1| flagellar hook-associated protein FlgL [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 357

 Score = 23.5 bits (49), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 7/56 (12%)

Query: 330 FCTKNAIKQISISDKALSLLTKYPWIDNVQELKNIL-LRAVIGLKDSHLTEDRFVL 384
           F +KN      ++D A ++LTK       Q L  I+  RAV+G+ + ++ E+R  L
Sbjct: 256 FLSKN------LTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFL 305


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.323    0.141    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 312,899
Number of Sequences: 1233
Number of extensions: 13450
Number of successful extensions: 41
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 34
Number of HSP's gapped (non-prelim): 13
length of query: 482
length of database: 328,796
effective HSP length: 77
effective length of query: 405
effective length of database: 233,855
effective search space: 94711275
effective search space used: 94711275
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 40 (20.0 bits)