BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780916|ref|YP_003065329.1| putative sigma-54-dependent transcription regulator protein [Candidatus Liberibacter asiaticus str. psy62] (482 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780916|ref|YP_003065329.1| putative sigma-54-dependent transcription regulator protein [Candidatus Liberibacter asiaticus str. psy62] Length = 482 Score = 976 bits (2524), Expect = 0.0, Method: Compositional matrix adjust. Identities = 482/482 (100%), Positives = 482/482 (100%) Query: 1 MPRKKSLDRHKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVSDLSTISKIQVNVIFLSL 60 MPRKKSLDRHKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVSDLSTISKIQVNVIFLSL Sbjct: 1 MPRKKSLDRHKRVLIIDKDDEQIKIIKDHVESYGYDVFIVNVSDLSTISKIQVNVIFLSL 60 Query: 61 INCEDDKENILKNIVDKIPIVPIIVQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSI 120 INCEDDKENILKNIVDKIPIVPIIVQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSI Sbjct: 61 INCEDDKENILKNIVDKIPIVPIIVQTTQDNIKILNCFLYNRISKFFLNLVSRKQLCDSI 120 Query: 121 ICALREGVVPSQENEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLS 180 ICALREGVVPSQENEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLS Sbjct: 121 ICALREGVVPSQENEHCALDSLIAVSPAMIQVVDLARKAGDCAIPIMIQGEFGVGKKRLS 180 Query: 181 RFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGTIVLE 240 RFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGTIVLE Sbjct: 181 RFIHESGKRAFFPFFIVNCGMIDQDKIEKFLFGDVDLQTKNSAQFLGKFIEANGGTIVLE 240 Query: 241 EPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYY 300 EPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYY Sbjct: 241 EPDALPLAVQGRIYNFIETGKIEFFDSRGAIRLDVRLIFLTEKNLLPQVKSHVFRKDLYY 300 Query: 301 RISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQE 360 RISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQE Sbjct: 301 RISVFLINISTLRSRSEDIPWLVHFFLQSFCTKNAIKQISISDKALSLLTKYPWIDNVQE 360 Query: 361 LKNILLRAVIGLKDSHLTEDRFVLLLSREGKKEREFHTETACTCYTEGKSSDTILDNLSQ 420 LKNILLRAVIGLKDSHLTEDRFVLLLSREGKKEREFHTETACTCYTEGKSSDTILDNLSQ Sbjct: 361 LKNILLRAVIGLKDSHLTEDRFVLLLSREGKKEREFHTETACTCYTEGKSSDTILDNLSQ 420 Query: 421 ESIPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQMSEVARRLGIGRSTLYRKIREYNIEVD 480 ESIPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQMSEVARRLGIGRSTLYRKIREYNIEVD Sbjct: 421 ESIPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQMSEVARRLGIGRSTLYRKIREYNIEVD 480 Query: 481 SL 482 SL Sbjct: 481 SL 482 >gi|254781206|ref|YP_003065619.1| hypothetical protein CLIBASIA_05565 [Candidatus Liberibacter asiaticus str. psy62] Length = 1246 Score = 28.1 bits (61), Expect = 0.31, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 12/86 (13%) Query: 57 FLSLINCEDDKENILKNIVDKIPIVPIIVQTTQDNIKILNCFLYNRISK---FFLNLVSR 113 F+ ++ ED+ + I K + D + +++TQ+NI+ + L N K FL L + Sbjct: 123 FMDMVETEDEHK-INKQVRDALESAGFDLESTQENIRKVESALINNNMKDAFRFLELAQK 181 Query: 114 -KQLCDSII-------CALREGVVPS 131 K+ DS I L+E P+ Sbjct: 182 SKETADSHIIEAIDVGTKLKENTPPT 207 >537021.9.peg.472_1 Length = 369 Score = 26.6 bits (57), Expect = 0.89, Method: Compositional matrix adjust. Identities = 14/38 (36%), Positives = 20/38 (52%) Query: 149 MIQVVDLARKAGDCAIPIMIQGEFGVGKKRLSRFIHES 186 MI+ + A K+G A M+ G G+GK +R I S Sbjct: 7 MIKTLTNAFKSGRIAQSYMLSGTRGIGKTTTARIIARS 44 >gi|254781158|ref|YP_003065571.1| peptidyl prolyl cis-trans isomerase D signal peptide protein [Candidatus Liberibacter asiaticus str. psy62] Length = 631 Score = 25.8 bits (55), Expect = 1.8, Method: Compositional matrix adjust. Identities = 11/24 (45%), Positives = 16/24 (66%) Query: 373 KDSHLTEDRFVLLLSREGKKEREF 396 KD+ + D FV L+REG E+E+ Sbjct: 128 KDNKFSHDVFVSRLAREGINEKEY 151 >gi|254780799|ref|YP_003065212.1| DNA translocase FtsK [Candidatus Liberibacter asiaticus str. psy62] Length = 806 Score = 25.0 bits (53), Expect = 2.5, Method: Compositional matrix adjust. Identities = 10/28 (35%), Positives = 19/28 (67%) Query: 437 DIEKEIIGLAMKLYRAQMSEVARRLGIG 464 D+ K+ + + ++ +A +S + RRLGIG Sbjct: 741 DLYKQAVDIVLRDNKASISYIQRRLGIG 768 >gi|255764468|ref|YP_003064806.2| permease protein [Candidatus Liberibacter asiaticus str. psy62] Length = 361 Score = 25.0 bits (53), Expect = 2.6, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 7/56 (12%) Query: 398 TETACTCYTEGKSSDTILDNLSQESIPAIGQDGEVRRLSDIEKEIIGLAMKLYRAQ 453 T+T Y + S D L +++I I DGEV R S I K+I + K Y Q Sbjct: 181 TQTHKIYYAQSGSID-----LDRQAI--ILNDGEVHRKSPISKDISIMKFKSYTLQ 229 >gi|254780499|ref|YP_003064912.1| hypothetical protein CLIBASIA_01930 [Candidatus Liberibacter asiaticus str. psy62] Length = 167 Score = 25.0 bits (53), Expect = 2.9, Method: Compositional matrix adjust. Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 6/32 (18%) Query: 228 KFIEANGGT------IVLEEPDALPLAVQGRI 253 KF+ NG T +V+ EPD LP + G I Sbjct: 100 KFLYPNGDTSGKKNVVVIREPDILPFSEDGVI 131 >gi|254780476|ref|YP_003064889.1| two component response regulator [Candidatus Liberibacter asiaticus str. psy62] Length = 123 Score = 24.3 bits (51), Expect = 5.2, Method: Compositional matrix adjust. Identities = 8/25 (32%), Positives = 19/25 (76%) Query: 11 KRVLIIDKDDEQIKIIKDHVESYGY 35 K+V+I++ ++ +K+ +D +E+ GY Sbjct: 3 KKVMIVEDNELNMKLFRDLIETSGY 27 >gi|254780632|ref|YP_003065045.1| hypothetical protein CLIBASIA_02595 [Candidatus Liberibacter asiaticus str. psy62] Length = 71 Score = 23.5 bits (49), Expect = 7.6, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 29/49 (59%), Gaps = 2/49 (4%) Query: 110 LVSRKQLCDSIICALREGVVPSQENEHCAL-DSLIAVSPAMIQVVDLAR 157 +++ + +S++ + R + P+ + + C L S++AV P + + D+AR Sbjct: 1 MINGPETLESLMVSFRVDMSPAVQLQ-CGLGSSIVAVKPVVPYITDVAR 48 >gi|254780523|ref|YP_003064936.1| flagellar hook-associated protein FlgL [Candidatus Liberibacter asiaticus str. psy62] Length = 357 Score = 23.5 bits (49), Expect = 8.1, Method: Compositional matrix adjust. Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 7/56 (12%) Query: 330 FCTKNAIKQISISDKALSLLTKYPWIDNVQELKNIL-LRAVIGLKDSHLTEDRFVL 384 F +KN ++D A ++LTK Q L I+ RAV+G+ + ++ E+R L Sbjct: 256 FLSKN------LTDGARNVLTKKMLSTVQQGLSGIIEQRAVLGISEKNINEERVFL 305 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.323 0.141 0.401 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 312,899 Number of Sequences: 1233 Number of extensions: 13450 Number of successful extensions: 41 Number of sequences better than 100.0: 13 Number of HSP's better than 100.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 34 Number of HSP's gapped (non-prelim): 13 length of query: 482 length of database: 328,796 effective HSP length: 77 effective length of query: 405 effective length of database: 233,855 effective search space: 94711275 effective search space used: 94711275 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 40 (20.0 bits)