RPSBLAST alignment for GI: 254780917 and conserved domain: TIGR01194
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. Length = 555
Score = 94.3 bits (234), Expect = 8e-20
Identities = 110/514 (21%), Positives = 193/514 (37%), Gaps = 55/514 (10%)
Query: 81 GIFIVKGIASFVQNYYLSCAGNSIIAEQQRKIYRRLLQYGMEFYDSNQSSELQVRFTHAT 140
G+ ++ + + + + AG IIA + + ++L +E D + L TH
Sbjct: 61 GLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDI 120
Query: 141 QSVRSVVDIFITSFLRDFLTLVGLIVVMFLQEPTLSLCTIIIGPLCILGVRI-LVKRVRH 199
+ + + IF + + + + +L P ++ I I+G L+ +
Sbjct: 121 DQINAFLFIFPPIAIALAIFFFCIAYLAYLSVPMFAITISAI----IIGTAAQLLAFMGG 176
Query: 200 IMEQGMVAIGHIIQNLQETVIGIRIVKSFAMEEVMNQRMCNM------IKEVEDRLNKVA 253
+ A E I +F +E+ + + I+E + + +
Sbjct: 177 F--KFFHAARDEEDAFNEHTHAI----AFGAKELKIHGIRRLSFAHGAIQESANNIADLH 230
Query: 254 KIESATSPIMETISGLSIAGIILFSGFLMSKKGTSNAGEIMSFITALLMAYEPAKRIART 313
IE E L +I + F + + +A I +F+ ALL P + +
Sbjct: 231 IIEILIFIAAENFGQLLFFLLIGCALFAAAMFASIDAAAISAFVLALLYIKGPLEMLVSA 290
Query: 314 RIILEGGMVGVRCMFSLLD-----HPIMIEESPHAVNLPVGK---GTTVFRDVFFSYK-- 363
IL + + + + P + V L + +DV + K
Sbjct: 291 LPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAP 350
Query: 364 QGHP--VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDIT 421
+G L I+L G + +VG +G GKST+ L +Y P G I +DG + +
Sbjct: 351 EGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADS 410
Query: 422 FSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIMSLPQGYDT 481
R+ S + D LF + LIG E A NA ++ L
Sbjct: 411 RDDYRDLFSAIFADFHLF------DDLIGPDEG------EHASLDNAQQYLQRLEIADKV 458
Query: 482 YVGENG----SNLSGGQKQRIAIARAMLRDGHILVLDEATSALDT------HTENLVRQA 531
+ + G + LS GQ++R+A+ A L D IL+ DE + D + E L
Sbjct: 459 KIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELL--PD 516
Query: 532 LSRLMQGRTTIVIAHRISTIIEADHIIFIEDGKV 565
L R QG+T I+I+H AD II + G +
Sbjct: 517 LKR--QGKTIIIISHDDQYFELADQIIKLAAGCI 548