RPSBLAST alignment for GI: 254780917 and conserved domain: TIGR01846

>gnl|CDD|162558 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. Length = 694

 Score =  287 bits (736), Expect = 6e-78
 Identities = 177/540 (32%), Positives = 275/540 (50%), Gaps = 36/540 (6%)

Query: 66  STDIFHVIVVSSTVAGIFIVKGIASFVQNYYLSCAGNSIIAEQQRKIYRRLLQYGMEFYD 125
                 V+ ++     IF        ++ Y  +   + I  E   ++YR LL   + +++
Sbjct: 174 GLSTLSVLALAMLAVAIFEP--ALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFE 231

Query: 126 SNQSSELQVRFTHATQSVRSVVDI--FIT----SFLRDFLTLVGLIVVMFLQEPTLSLCT 179
           S +  +   R       VR +  I  F+T    + + D L +V  + VMF   PTL+   
Sbjct: 232 SRRVGDTVAR-------VRELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTG-- 282

Query: 180 IIIGPLCI-----LGVR-ILVKRVRHIMEQGMVAIGHIIQNLQETVIGIRIVKSFAMEEV 233
           ++IG L       + V  IL KRV    E+   A       L E+V GI  +K+ A E  
Sbjct: 283 VVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSF----LVESVTGIETIKATATEPQ 338

Query: 234 MNQRMCNMIKEVEDRLNKVAKIESATSPIMETISGLSIAGIILFSGFLMSKKGTSNAGEI 293
              R    +        +V  + +     +E I  L+ A I+L+ G  +   G  + G++
Sbjct: 339 FQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFA-ILLWFGAHLVIGGALSPGQL 397

Query: 294 MSFITALLMAYEPAKRIARTRIILEGGMVGVRCMFSLLDHPIMIEESPHA--VNLPVGKG 351
           ++F        +P  R+A+     +   + +  +  +L+ P    E   A    LP  +G
Sbjct: 398 VAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPT---EPRSAGLAALPELRG 454

Query: 352 TTVFRDVFFSYKQGHP-VLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSI 410
              F ++ F Y    P VLS +NL  K G+   +VGPSGSGKST+  LL R+Y P  G +
Sbjct: 455 AITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQV 514

Query: 411 EIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHD 470
            +DG+++     + LR ++  V Q+  LFS ++R NI +  P A  E +I  AK A AHD
Sbjct: 515 LVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHD 574

Query: 471 FIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQ 530
           FI  LPQGY+T VGE G+NLSGGQ+QRIAIARA++ +  IL+ DEATSALD  +E L+ +
Sbjct: 575 FISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMR 634

Query: 531 ALSRLMQGRTTIVIAHRISTIIEADHIIFIEDGKVSESGDQKYLLQQKDGSLYKKMYASQ 590
            +  + +GRT I+IAHR+ST+   D II +E G+++ESG  + LL  +   LY +++  Q
Sbjct: 635 NMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQ--GLYARLWQQQ 692