RPSBLAST alignment for GI: 254780917 and conserved domain: TIGR03375

>gnl|CDD|163239 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. Length = 694
 Score =  256 bits (657), Expect = 9e-69
 Identities = 150/534 (28%), Positives = 251/534 (47%), Gaps = 60/534 (11%)

Query: 73  IVVSSTVAGIFIVKGIASFVQNYYLSCAGNSIIAEQQRKIYRRLLQYGMEFY-DSNQSSE 131
            V++  VA   +   +   +++Y+L  AG         K++ R+L   ME    S  S  
Sbjct: 187 WVLAIGVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLGLRMEARPASVGSFA 246

Query: 132 LQVRFTHATQSVRSVVDIFITSFLRDFLTLVGLI---------VVMFLQEPTLSLCTIII 182
            Q+R     +SVR     F TS      TL  LI         +V+ +    L    ++ 
Sbjct: 247 NQLR---EFESVRD----FFTS-----ATLTALIDLPFALLFLLVIAIIGGPLVWVPLVA 294

Query: 183 GPLCILGVRILVKRVRHIMEQGMVAIGHIIQNLQETVIGIRIVKSFAMEEVMNQRMCNMI 242
            PL +L   +L + +  + E+ M         L E++ G+  +K+   E    +R    +
Sbjct: 295 IPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTV 354

Query: 243 KEVEDRLNKVAKIESATSPIMETISGLSIAGIILFSGFLMSKKGTSNAGEI--------- 293
             +     K   + +  +   + I  L    I++   +L+S       GE+         
Sbjct: 355 AALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLIS------DGELTMGGLIACV 408

Query: 294 ---------MSFITALLMAYEPAKRIARTRIILEGGMVGVRCMFSLLDHPIMIEESPHAV 344
                    +  +  LL  Y+ AK            +  +  +  L   P+   E    +
Sbjct: 409 MLSGRALAPLGQLAGLLTRYQQAKT----------ALQSLDELMQL---PVERPEGTRFL 455

Query: 345 NLPVGKGTTVFRDVFFSYK-QGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMY 403
           + P  +G   FR+V F+Y  Q  P L  ++L  + G+  A++G  GSGKST++ LL+ +Y
Sbjct: 456 HRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLY 515

Query: 404 DPSSGSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIA 463
            P+ GS+ +DG++IR I  + LR  I YV QD  LF  T+R NI +G P A +EE++  A
Sbjct: 516 QPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAA 575

Query: 464 KSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTH 523
           + A   +F+   P G D  +GE G +LSGGQ+Q +A+ARA+LRD  IL+LDE TSA+D  
Sbjct: 576 ELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNR 635

Query: 524 TENLVRQALSRLMQGRTTIVIAHRISTIIEADHIIFIEDGKVSESGDQKYLLQQ 577
           +E   +  L R + G+T +++ HR S +   D II +++G++   G +  +L+ 
Sbjct: 636 SEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689