RPSBLAST alignment for GI: 254780917 and conserved domain: TIGR03375
>gnl|CDD|163239 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. Length = 694
Score = 256 bits (657), Expect = 9e-69
Identities = 150/534 (28%), Positives = 251/534 (47%), Gaps = 60/534 (11%)
Query: 73 IVVSSTVAGIFIVKGIASFVQNYYLSCAGNSIIAEQQRKIYRRLLQYGMEFY-DSNQSSE 131
V++ VA + + +++Y+L AG K++ R+L ME S S
Sbjct: 187 WVLAIGVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLGLRMEARPASVGSFA 246
Query: 132 LQVRFTHATQSVRSVVDIFITSFLRDFLTLVGLI---------VVMFLQEPTLSLCTIII 182
Q+R +SVR F TS TL LI +V+ + L ++
Sbjct: 247 NQLR---EFESVRD----FFTS-----ATLTALIDLPFALLFLLVIAIIGGPLVWVPLVA 294
Query: 183 GPLCILGVRILVKRVRHIMEQGMVAIGHIIQNLQETVIGIRIVKSFAMEEVMNQRMCNMI 242
PL +L +L + + + E+ M L E++ G+ +K+ E +R +
Sbjct: 295 IPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTV 354
Query: 243 KEVEDRLNKVAKIESATSPIMETISGLSIAGIILFSGFLMSKKGTSNAGEI--------- 293
+ K + + + + I L I++ +L+S GE+
Sbjct: 355 AALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLIS------DGELTMGGLIACV 408
Query: 294 ---------MSFITALLMAYEPAKRIARTRIILEGGMVGVRCMFSLLDHPIMIEESPHAV 344
+ + LL Y+ AK + + + L P+ E +
Sbjct: 409 MLSGRALAPLGQLAGLLTRYQQAKT----------ALQSLDELMQL---PVERPEGTRFL 455
Query: 345 NLPVGKGTTVFRDVFFSYK-QGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMY 403
+ P +G FR+V F+Y Q P L ++L + G+ A++G GSGKST++ LL+ +Y
Sbjct: 456 HRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLY 515
Query: 404 DPSSGSIEIDGINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIA 463
P+ GS+ +DG++IR I + LR I YV QD LF T+R NI +G P A +EE++ A
Sbjct: 516 QPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAA 575
Query: 464 KSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTH 523
+ A +F+ P G D +GE G +LSGGQ+Q +A+ARA+LRD IL+LDE TSA+D
Sbjct: 576 ELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNR 635
Query: 524 TENLVRQALSRLMQGRTTIVIAHRISTIIEADHIIFIEDGKVSESGDQKYLLQQ 577
+E + L R + G+T +++ HR S + D II +++G++ G + +L+
Sbjct: 636 SEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689