RPSBLAST alignment for GI: 254780917 and conserved domain: cd03245
>gnl|CDD|73004 cd03245, ABCC_bacteriocin_exporters, ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.. Length = 220
Score = 216 bits (552), Expect = 1e-56
Identities = 93/216 (43%), Positives = 139/216 (64%), Gaps = 1/216 (0%)
Query: 355 FRDVFFSYK-QGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEID 413
FR+V FSY Q P L ++L ++G+ A++G GSGKST++ LL +Y P+SGS+ +D
Sbjct: 5 FRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLD 64
Query: 414 GINIRDITFSSLRERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDFIM 473
G +IR + + LR I YV QDV LF T+R NI +G P+A +E ++ A+ A DF+
Sbjct: 65 GTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVN 124
Query: 474 SLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALS 533
P G D +GE G LSGGQ+Q +A+ARA+L D IL+LDE TSA+D ++E +++ L
Sbjct: 125 KHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLR 184
Query: 534 RLMQGRTTIVIAHRISTIIEADHIIFIEDGKVSESG 569
+L+ +T I+I HR S + D II ++ G++ G
Sbjct: 185 QLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220