RPSBLAST alignment for GI: 254780917 and conserved domain: cd03271

>gnl|CDD|73030 cd03271, ABC_UvrA_II, The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.. Length = 261
 Score = 67.1 bits (164), Expect = 1e-11
 Identities = 67/234 (28%), Positives = 99/234 (42%), Gaps = 46/234 (19%)

Query: 369 LSGINLCFKSGKMTALVGPSGSGKSTIIN--LLMRMYDPSSGSIEIDGINIRDITFSSLR 426
           L  I++    G +T + G SGSGKS++IN  L   +        E  G N   I      
Sbjct: 11  LKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPG-NHDRIEGLEHI 69

Query: 427 ERISYVGQD---------------VF-----LFS---NTVRYN------ILIGRPMA--- 454
           +++  + Q                VF     LF       RYN         G+ +A   
Sbjct: 70  DKVIVIDQSPIGRTPRSNPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVL 129

Query: 455 --TEEEMIE----IAKSANAHDFIMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLR-- 506
             T EE +E    I K A     +  +  GY   +G+  + LSGG+ QRI +A+ + +  
Sbjct: 130 DMTVEEALEFFENIPKIARKLQTLCDVGLGYIK-LGQPATTLSGGEAQRIKLAKELSKRS 188

Query: 507 DGHIL-VLDEATSALDTHTENLVRQALSRLM-QGRTTIVIAHRISTIIEADHII 558
            G  L +LDE T+ L  H    + + L RL+ +G T +VI H +  I  AD II
Sbjct: 189 TGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCADWII 242