HHsearch alignment for GI: 254780918 and conserved domain: PRK13368
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional.
Probab=93.36 E-value=0.51 Score=24.53 Aligned_cols=203 Identities=12% Similarity=0.138 Sum_probs=103.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECC-CCCCHHHHHHHHHHHCCCCEEE
Q ss_conf 745569999987642079751579971489981689999999863088827997578-8873388989878614897474
Q gi|254780918|r 334 NHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNT-HPFNYSRINNNATLHAKGQYFC 412 (623)
Q Consensus 334 n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~-~~~n~s~~~N~g~~~a~geyil 412 (623)
T Consensus 25 ~g~pmi~~v~~~a~~s-~~~d-~v~Va---Tdd~eI~~~----~k~~-g~~~i~ts~~~~~GTdR-i~Ea~~~~~~d~iv 93 (238)
T PRK13368 25 LGKPMIQHVYERAAQA-AGVE-EVYVA---TDDQRIEDA----VEAF-GGKVVMTSDDHLSGTDR-LAEVMLKIEADIYI 93 (238)
T ss_pred CCCCHHHHHHHHHHHC-CCCC-EEEEE---CCCHHHHHH----HHCC-CCEEEECCCCCCCCHHH-HHHHHHHCCCCEEE
T ss_conf 8969999999999846-8988-29995---684248777----5004-63278515655771478-99998515987899
Q ss_pred EECCCCEEECHHHHHHHHHHHC-CCCEEEEEE--EEECCCCCCCCCCCEEEECCEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4058827828168899887742-898169953--7664676756778704413254067865664322565555764422
Q gi|254780918|r 413 FLNNDTEVINGQWLSEMMGIAS-QPQVGAVGA--RLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHHKARCSVPNYQ 489 (623)
Q Consensus 413 fLn~D~~v~~~~wL~~Ll~~~~-~~~vG~Vg~--~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~~~~~~~~~~~~~~ 489 (623)
T Consensus 94 nvQgDePli~p~~I~~~i~~~~~~~~~~v~t~~~~~~~~-~~~~n~n-~v---Kvv~~~~~~~ly-fSR~~ip~~~~~-~ 166 (238)
T PRK13368 94 NVQGDEPLIRPRDIDTLIQPMLDDPSINVATLCAPISTE-EEFESPN-VV---KVVVDKNGDALY-FSRSPIPSRRDG-E 166 (238)
T ss_pred EECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCH-HHHCCCC-CE---EEEECCCCCCCC-CCCCCCCCCCCC-C
T ss_conf 953886778999999999999837765276787416888-8843898-52---999899787011-452567511245-4
Q ss_pred CCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEEECCCEEEEEECCCCCCCCCCCHH
Q ss_conf 22334444411101102043888898717999768763231688999999749819984754999517733677668999
Q gi|254780918|r 490 AFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVWTPHADLYHDESRTRKYDHEDPA 569 (623)
Q Consensus 490 ~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~v~~P~a~v~H~es~srg~~~~~~~ 569 (623)
T Consensus 167 ------~~~~~-khiGiy~f~~~~L~~f~~l~~s~lE-~~E~lEq-LR~leng~~I~~~~~------~~~~~~V--Dt~e 229 (238)
T PRK13368 167 ------SARYL-KHVGIYAFRRDVLQQFSQLPETPLE-QIESLEQ-LRALEHGYKIRMVEV------EATSIGV--DTPE 229 (238)
T ss_pred ------CCHHH-EEEEEEEECHHHHHHHHHCCCCHHH-HHHHHHH-HHHHHCCCCEEEEEE------CCCCCCC--CCHH
T ss_conf ------20122-0301122119999998708998567-7770899-999986992679995------9999998--7999
Q ss_pred HH
Q ss_conf 99
Q gi|254780918|r 570 KM 571 (623)
Q Consensus 570 k~ 571 (623)
T Consensus 230 Dl 231 (238)
T PRK13368 230 DL 231 (238)
T ss_pred HH
T ss_conf 99