HHsearch alignment for GI: 254780918 and conserved domain: TIGR03469
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=99.97 E-value=1.4e-30 Score=205.70 Aligned_cols=215 Identities=18% Similarity=0.255 Sum_probs=147.1
Q ss_pred CCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCC-CEEEEEECCCCCCHHHHHHHHHHHHCCCC---CEEEEECCCCC
Q ss_conf 678888816999953774556999998764207975-15799714899816899999998630888---27997578887
Q gi|254780918|r 318 MIPNPPPLVSIIIPTYNHHHLLKICLESIYHKTTYS-SFEVIIIDNLSDDSKTFLYLQKIQKKYPN---LRVITDNTHPF 393 (623)
Q Consensus 318 ~~~~~~P~VSIIIp~~n~~~~l~~cl~Sl~~~t~y~-~~EiivVdn~S~d~~t~~~l~~~~~~~~~---~~~i~~~~~~~ 393 (623)
T Consensus 34 ~~p~~~P~VSViIPARNEe~~I~~~L~Sl~~Q~-yp~~~EvivvDD~StD-~T~~i~~~~~~~~~~~~rl~vi~~~~lP~ 111 (384)
T TIGR03469 34 PSPEAWPAVVAVVPARNEADVIGECVTSLLEQD-YPGKLHVILVDDHSTD-GTADIARAAARAYGRGDRLTVVSGQPLPP 111 (384)
T ss_pred CCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCC-CCCCEEEEEEECCCCC-HHHHHHHHHHHHCCCCCEEEEECCCCCCC
T ss_conf 997789976999768987888999999998378-9997599999569986-39999999974468886389825898998
Q ss_pred ---CHHHHHHHHHHHC-----CCCEEEEECCCCEEECHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCEEEECCEE
Q ss_conf ---3388989878614-----89747440588278281688998877428981699537664676756778704413254
Q gi|254780918|r 394 ---NYSRINNNATLHA-----KGQYFCFLNNDTEVINGQWLSEMMGIASQPQVGAVGARLWYRRKKLWKRSKRLQHGGVI 465 (623)
Q Consensus 394 ---n~s~~~N~g~~~a-----~geyilfLn~D~~v~~~~wL~~Ll~~~~~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v 465 (623)
T Consensus 112 gW~GK~~A~~qg~~~A~~~~~~ge~llF~DADv~~-~p~~l~~~v~~~~~~~~~lvS~~p~~~~-~~~~e-~l~~p~~-~ 187 (384)
T TIGR03469 112 GWSGKLWAVSQGIAAARTLAPPADYLLLTDADIAH-GPDNLARLVARARAEGLDLVSLMVRLRC-ESFWE-KLLIPAF-V 187 (384)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCC-CCCHHHHHHHHHHHCCCCEEECCCCEEC-CCHHH-HHHHHHH-H
T ss_conf 76511889999999985257877579994575000-8769999999999759984733354036-97899-9999999-9
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEE
Q ss_conf 06786566432256555576442222334444411101102043888898717999768763231688999999749819
Q gi|254780918|r 466 MGINNIAGHKNKHHKARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRN 545 (623)
Q Consensus 466 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~ 545 (623)
T Consensus 188 ~~-------~~~~~p~~-----~~~---~~~~~~~~a~G~~~l~rR~ay~~iGGh~av~~-~v~DD~~Lar~ik~~G~~v 251 (384)
T TIGR03469 188 FF-------FQKLYPFR-----WVN---DPRRRTAAAAGGCILIRREALERIGGIAAIRG-ALIDDCTLAAAVKRSGGRI 251 (384)
T ss_pred HH-------HHHHCCHH-----HHC---CCCCCCHHCCCCEEEEEHHHHHHCCCHHHHHC-CCCCHHHHHHHHHHCCCCE
T ss_conf 99-------99966488-----753---96533001158658978999987488888833-7332899999999759928
Q ss_pred EECCCEEEE
Q ss_conf 984754999
Q gi|254780918|r 546 VWTPHADLY 554 (623)
Q Consensus 546 v~~P~a~v~ 554 (623)
T Consensus 252 ~~~~g~~~v 260 (384)
T TIGR03469 252 WLGLAARTR 260 (384)
T ss_pred EEECCCCEE
T ss_conf 986265337