HHsearch alignment for GI: 254780918 and conserved domain: TIGR03472
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=99.91 E-value=1.4e-23 Score=162.80 Aligned_cols=197 Identities=17% Similarity=0.158 Sum_probs=139.2
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCC--EEEEECCCCCC---HH
Q ss_conf 45897899974758988899999999982889974899987757806799999998875798--89998088885---64
Q gi|254780918|r 64 QNKPLISVIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDSR--IKVVFRAKNGH---IS 138 (623)
Q Consensus 64 ~~~P~iSIiip~yn~~~~~L~~~i~Si~~Qty~~~EliivdD~S~d~~~~~~l~~~~~~d~r--i~~~~~~~n~g---~~ 138 (623)
T Consensus 38 ~~~P~VSil~P~~~e-~~~l~~~L~sl~~qdYP~~evi~~vd~~~D~-a~~i~~~l~~~~p~~~~~~v~~~~~~g~n~K~ 115 (373)
T TIGR03472 38 RAWPPVSVLKPLHGD-EPELYENLASFCRQDYPGFQMLFGVQDPDDP-ALAVVRRLRADFPDADIDLVIDARRHGPNRKV 115 (373)
T ss_pred CCCCCEEEEEECCCC-CHHHHHHHHHHHHCCCCCEEEEEEECCCCCC-HHHHHHHHHHHCCCCCEEEEECCCCCCCCHHH
T ss_conf 999980799807998-3049999999986789982899997899997-89999999986899987998588767887899
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCC--EE-EECCCCCCCHHHH-----
Q ss_conf 899999996599899997698752732079999998732475542022206758983--65-4225667896674-----
Q gi|254780918|r 139 AASNSAAQLATSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDKINENQI--RS-GPYFKYDFNPELF----- 210 (623)
Q Consensus 139 ~a~N~~l~~a~Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYsDe~~i~~~g~--~~-~p~fkp~~~~~~l----- 210 (623)
T Consensus 116 ~~L~~~~~~a~~dil~~~DaD~~~~p~~L~~lVa~l-~~~~vglVt~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 194 (373)
T TIGR03472 116 SNLINMLPHARHDILVIADSDISVGPDYLRQVVAPL-ADPDVGLVTCLYRGRPVPGFWSRLGAMGINHNFLPSVMVARAL 194 (373)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHH-HCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999986278889998799752848999999997-4899775832564678887899999999999888889999761
Q ss_pred CC-CCCCCHHHHHHHHHHHHHCCCCCC-CCCCCCCHHHHHHHHCCCCCCEEECCCCE
Q ss_conf 14-785431457689999971887898-77302741367886424875220068422
Q gi|254780918|r 211 HV-HNMITHLGVYRTETFKKIGGFREK-FEGAQDYDLVLRFLENIDLSQIIHIPRVL 265 (623)
Q Consensus 211 ~s-~nyi~~~~~~rr~~~~~iGgf~~~-~~~~~D~Dl~lR~~~~~~~~~i~hip~vL 265 (623)
T Consensus 195 ~~~~~~~G~~~~~RR~~l~~iGG~~~~~~~laED~~L~~~i~~~G--~rv~l~~~~v 249 (373)
T TIGR03472 195 GRARFCFGATMALRRATLEAIGGLAALAHHLADDYWLGELVRALG--LRVVLAPVVV 249 (373)
T ss_pred CCCCCCCCCCCEEEHHHHHHCCCHHHHHCCCHHHHHHHHHHHHCC--CCEEECCHHH
T ss_conf 465335674011359999974797777215256899999999669--9889656266