HHsearch alignment for GI: 254780918 and conserved domain: TIGR03472

>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=99.91  E-value=1.4e-23  Score=162.80  Aligned_cols=197  Identities=17%  Similarity=0.158  Sum_probs=139.2

Q ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCC--EEEEECCCCCC---HH
Q ss_conf             45897899974758988899999999982889974899987757806799999998875798--89998088885---64
Q gi|254780918|r   64 QNKPLISVIMPVYKIKKEWLEMAIESVRSQIYSHWELCIAEDCSGDIETVSLLKKYANMDSR--IKVVFRAKNGH---IS  138 (623)
Q Consensus        64 ~~~P~iSIiip~yn~~~~~L~~~i~Si~~Qty~~~EliivdD~S~d~~~~~~l~~~~~~d~r--i~~~~~~~n~g---~~  138 (623)
T Consensus        38 ~~~P~VSil~P~~~e-~~~l~~~L~sl~~qdYP~~evi~~vd~~~D~-a~~i~~~l~~~~p~~~~~~v~~~~~~g~n~K~  115 (373)
T TIGR03472        38 RAWPPVSVLKPLHGD-EPELYENLASFCRQDYPGFQMLFGVQDPDDP-ALAVVRRLRADFPDADIDLVIDARRHGPNRKV  115 (373)
T ss_pred             CCCCCEEEEEECCCC-CHHHHHHHHHHHHCCCCCEEEEEEECCCCCC-HHHHHHHHHHHCCCCCEEEEECCCCCCCCHHH
T ss_conf             999980799807998-3049999999986789982899997899997-89999999986899987998588767887899


Q ss_pred             HHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCC--EE-EECCCCCCCHHHH-----
Q ss_conf             899999996599899997698752732079999998732475542022206758983--65-4225667896674-----
Q gi|254780918|r  139 AASNSAAQLATSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDKINENQI--RS-GPYFKYDFNPELF-----  210 (623)
Q Consensus       139 ~a~N~~l~~a~Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYsDe~~i~~~g~--~~-~p~fkp~~~~~~l-----  210 (623)
T Consensus       116 ~~L~~~~~~a~~dil~~~DaD~~~~p~~L~~lVa~l-~~~~vglVt~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  194 (373)
T TIGR03472       116 SNLINMLPHARHDILVIADSDISVGPDYLRQVVAPL-ADPDVGLVTCLYRGRPVPGFWSRLGAMGINHNFLPSVMVARAL  194 (373)
T ss_pred             HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHH-HCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             999999986278889998799752848999999997-4899775832564678887899999999999888889999761


Q ss_pred             CC-CCCCCHHHHHHHHHHHHHCCCCCC-CCCCCCCHHHHHHHHCCCCCCEEECCCCE
Q ss_conf             14-785431457689999971887898-77302741367886424875220068422
Q gi|254780918|r  211 HV-HNMITHLGVYRTETFKKIGGFREK-FEGAQDYDLVLRFLENIDLSQIIHIPRVL  265 (623)
Q Consensus       211 ~s-~nyi~~~~~~rr~~~~~iGgf~~~-~~~~~D~Dl~lR~~~~~~~~~i~hip~vL  265 (623)
T Consensus       195 ~~~~~~~G~~~~~RR~~l~~iGG~~~~~~~laED~~L~~~i~~~G--~rv~l~~~~v  249 (373)
T TIGR03472       195 GRARFCFGATMALRRATLEAIGGLAALAHHLADDYWLGELVRALG--LRVVLAPVVV  249 (373)
T ss_pred             CCCCCCCCCCCEEEHHHHHHCCCHHHHHCCCHHHHHHHHHHHHCC--CCEEECCHHH
T ss_conf             465335674011359999974797777215256899999999669--9889656266