HHsearch alignment for GI: 254780918 and conserved domain: cd04184
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=100.00 E-value=5.4e-38 Score=251.04 Aligned_cols=199 Identities=26% Similarity=0.399 Sum_probs=151.6
Q ss_pred CCEEEEEECCCC-HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 816999953774-5569999987642079751579971489981689999999863088827997578887338898987
Q gi|254780918|r 324 PLVSIIIPTYNH-HHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNA 402 (623)
Q Consensus 324 P~VSIIIp~~n~-~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~g 402 (623)
T Consensus 1 P~vSViip~yN~~~~~l~~~l~Si~~Qt-~~~~EiIvvDd~StD~~~~~~~~~~~~~~~~i~~~~~~~-n~G~~~a~N~g 78 (202)
T cd04184 1 PLISIVMPVYNTPEKYLREAIESVRAQT-YPNWELCIADDASTDPEVKRVLKKYAAQDPRIKVVFREE-NGGISAATNSA 78 (202)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHCC-CCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCC-CCCHHHHHHHH
T ss_conf 9399999748896699999999998378-998799999899894789999999885188520012678-87899998864
Q ss_pred HHHCCCCEEEEECCCCEEECHHHHHHHHHHH-CCCCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCCCCCCCCC
Q ss_conf 8614897474405882782816889988774-289816995376646767567787044132540678656643225655
Q gi|254780918|r 403 TLHAKGQYFCFLNNDTEVINGQWLSEMMGIA-SQPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHHKA 481 (623)
Q Consensus 403 ~~~a~geyilfLn~D~~v~~~~wL~~Ll~~~-~~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~~~~~~ 481 (623)
T Consensus 79 i~~a~geyi~flD~DD~-~~p~~l~~~~~~~~~~~~~~~v~~~~-----~~~~~~~~~------~~-------~~--~-- 135 (202)
T cd04184 79 LELATGEFVALLDHDDE-LAPHALYEVVKALNEHPDADLIYSDE-----DKIDEGGKR------SE-------PF--F-- 135 (202)
T ss_pred HHCCCCCEEEECCCCCE-ECHHHHHHHHHHHHHCCCCCEEECCH-----HEECCCCCE------EE-------CC--C--
T ss_conf 51368766773277855-28439999999998689935997371-----168679978------72-------12--4--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEEECCCEEEEEEC
Q ss_conf 5576442222334444411101102043888898717999768763231688999999749819984754999517
Q gi|254780918|r 482 RCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVWTPHADLYHDE 557 (623)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~v~~P~a~v~H~e 557 (623)
T Consensus 136 ---~~~~~~-~~~~~~~~---~~~~~~~rr~~~~~iGgfde~-~~-~~eD~dl~lRl~~~g~ki~~ip~~-Ly~yR 201 (202)
T cd04184 136 ---KPDWSP-DLLLSQNY---IGHLLVYRRSLVRQVGGFREG-FE-GAQDYDLVLRVSEHTDRIAHIPRV-LYHWR 201 (202)
T ss_pred ---CCCCCH-HHHHHCCC---CCHHHHHHHHHHHHHCCCCCC-CC-CCHHHHHHHHHHHHCCEEEEECHH-HEEEC
T ss_conf ---787798-89853476---320366689999995898988-88-316999999999819979992808-84968