HHsearch alignment for GI: 254780918 and conserved domain: cd06420
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=100.00 E-value=1.2e-36 Score=242.68 Aligned_cols=179 Identities=27% Similarity=0.446 Sum_probs=141.4
Q ss_pred EEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCC-CCEEEEECCCCCCHHHHHHHHHHHC
Q ss_conf 999537745569999987642079751579971489981689999999863088-8279975788873388989878614
Q gi|254780918|r 328 IIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYP-NLRVITDNTHPFNYSRINNNATLHA 406 (623)
Q Consensus 328 IIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~-~~~~i~~~~~~~n~s~~~N~g~~~a 406 (623)
T Consensus 1 VIIptyN~~~~L~~~L~Sl~~Qt-~~~~EIIvvDd~StD-~t~~~~~~~~~~~~~~i~~~~~~~~g~~~~~arN~gi~~a 78 (182)
T cd06420 1 LIITTYNRPEALELVLKSVLNQS-ILPFEVIIADDGSTE-ETKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAIAAA 78 (182)
T ss_pred CEEEECCCHHHHHHHHHHHHHCC-CCCCEEEEEECCCCH-HHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHC
T ss_conf 49987798899999999998379-999589999799961-4899999998518874100010056726899999999855
Q ss_pred CCCEEEEECCCCEEECHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 89747440588278281688998877428981699537664676756778704413254067865664322565555764
Q gi|254780918|r 407 KGQYFCFLNNDTEVINGQWLSEMMGIASQPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHHKARCSVP 486 (623)
Q Consensus 407 ~geyilfLn~D~~v~~~~wL~~Ll~~~~~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~~~~~~~~~~~ 486 (623)
T Consensus 79 ~g~~i~flD~D~~-~~~~~i~~~~~~~-~~~~~~~g~~~~~~------~~--------------------------~~-~ 123 (182)
T cd06420 79 KGDYLIFIDGDCI-PHPDFIADHIELA-EPGVFLSGSRVLLN------EK--------------------------LT-E 123 (182)
T ss_pred CCCEEEEECCCCC-CCCHHHHHHHHHH-CCCEEEECCEEEEC------CC--------------------------CC-C
T ss_conf 8872888789832-7910999999970-89908986168717------53--------------------------45-2
Q ss_pred CCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEEECCCE-EEEEE
Q ss_conf 42222334444411101102043888898717999768763231688999999749819984754-99951
Q gi|254780918|r 487 NYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVWTPHA-DLYHD 556 (623)
Q Consensus 487 ~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~v~~P~a-~v~H~ 556 (623)
T Consensus 124 -------------~~~~~~~~~~~r~~~~~vGgfde~~~~~g~ED~Dl~~Rl~~~G~k~~~~~~~~~~yH~ 181 (182)
T cd06420 124 -------------RGIRGCNMSFWKKDLLAVNGFDEEFTGWGGEDSELVARLLNSGIKFRKLKFAAIVFHL 181 (182)
T ss_pred -------------CCCCEEEEEEEHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCEEEEEC
T ss_conf -------------6402448999999999858997002789977999999999829999961687699917