HHsearch alignment for GI: 254780918 and conserved domain: cd06437
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=100.00 E-value=2.9e-35 Score=234.27 Aligned_cols=208 Identities=18% Similarity=0.270 Sum_probs=147.2
Q ss_pred CCEEEEEECCCCHHHHHHHHHHHHHCCCCCC--EEEEEECCCCCCHHHHHHHHHHHH----CCCCCEEEEECCCCCCHHH
Q ss_conf 8169999537745569999987642079751--579971489981689999999863----0888279975788873388
Q gi|254780918|r 324 PLVSIIIPTYNHHHLLKICLESIYHKTTYSS--FEVIIIDNLSDDSKTFLYLQKIQK----KYPNLRVITDNTHPFNYSR 397 (623)
Q Consensus 324 P~VSIIIp~~n~~~~l~~cl~Sl~~~t~y~~--~EiivVdn~S~d~~t~~~l~~~~~----~~~~~~~i~~~~~~~n~s~ 397 (623)
T Consensus 1 P~VSViIPa~NE~~~I~~~l~sl~~q~-YP~~~~~I~VvDd-stD~-t~~~~~~~~~~~~~~~~~~~~~~~~~~~g~Ka~ 77 (232)
T cd06437 1 PMVTVQLPVFNEKYVVERLIEAACALD-YPKDRLEIQVLDD-STDE-TVRLAREIVEEYAAQGVNIKHVRRADRTGYKAG 77 (232)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHCC-CCCCEEEEEEEEC-CCCH-HHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH
T ss_conf 939999955898899999999999679-9998089999979-9966-999999999766641996899836988886699
Q ss_pred HHHHHHHHCCCCEEEEECCCCEEECHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCEEEECCEEECCCCCC-CCCC
Q ss_conf 989878614897474405882782816889988774289816995376646767567787044132540678656-6432
Q gi|254780918|r 398 INNNATLHAKGQYFCFLNNDTEVINGQWLSEMMGIASQPQVGAVGARLWYRRKKLWKRSKRLQHGGVIMGINNIA-GHKN 476 (623)
Q Consensus 398 ~~N~g~~~a~geyilfLn~D~~v~~~~wL~~Ll~~~~~~~vG~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~-~~~~ 476 (623)
T Consensus 78 aln~gl~~a~gd~i~~~DaD~~-~~~d~L~~~~~~f~~~~~g~v~~~~~~~n~----~~~~~------~~~~~~~~~~~~ 146 (232)
T cd06437 78 ALAEGMKVAKGEYVAIFDADFV-PPPDFLQKTPPYFADPKLGFVQTRWGHINA----NYSLL------TRVQAMSLDYHF 146 (232)
T ss_pred HHHHHHHHCCCCEEEEECCCCC-CCHHHHHHHHHHHCCCCEEEEECCCCCCCC----CCCHH------HHHHHHHHHHHH
T ss_conf 9999999778988999776447-384799999998319985999666432588----86799------999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHCCCEEEECCCEEEEEE
Q ss_conf 25655557644222233444441110110204388889871799976876323168899999974981998475499951
Q gi|254780918|r 477 KHHKARCSVPNYQAFAMHFTHSISAVTGACMVMSKKCFMHVGGFDEKNTPVVFSDIDLCLRILEAGYRNVWTPHADLYHD 556 (623)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~savtgacllirr~~f~~iGGfDE~~~~~~~eDvDlclR~~~~G~r~v~~P~a~v~H~ 556 (623)
T Consensus 147 ~~~~-----~~-----~~~~~~~~~~~G~~~~~Rr~~l~~~Gg~~~~~~---~ED~~l~~r~~~~G~ri~~~~~a~~~~~ 213 (232)
T cd06437 147 TIEQ-----VA-----RSSTGLFFNFNGTAGVWRKECIEDAGGWNHDTL---TEDLDLSYRAQLKGWKFVYLDDVVVPAE 213 (232)
T ss_pred HHHH-----HH-----HHHCCCCEECCCEEEEEEHHHHHHHCCCCCCCC---CHHHHHHHHHHHCCCEEEEECCCEEEEE
T ss_conf 9999-----99-----882599341265158775999998579988661---0189999999987998998068779767
Q ss_pred CC
Q ss_conf 77
Q gi|254780918|r 557 ES 558 (623)
Q Consensus 557 es 558 (623)
T Consensus 214 ~P 215 (232)
T cd06437 214 LP 215 (232)
T ss_pred CC
T ss_conf 77