HHsearch alignment for GI: 254780918 and conserved domain: cd06437

>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=99.97  E-value=4.1e-30  Score=202.75  Aligned_cols=194  Identities=25%  Similarity=0.313  Sum_probs=137.7

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHCCCCC--EEEEEECCCCCHHHHHHHHH----HHHHHCCCEEEEECCCCCC-HHH
Q ss_conf             9789997475898889999999998288997--48999877578067999999----9887579889998088885-648
Q gi|254780918|r   67 PLISVIMPVYKIKKEWLEMAIESVRSQIYSH--WELCIAEDCSGDIETVSLLK----KYANMDSRIKVVFRAKNGH-ISA  139 (623)
Q Consensus        67 P~iSIiip~yn~~~~~L~~~i~Si~~Qty~~--~EliivdD~S~d~~~~~~l~----~~~~~d~ri~~~~~~~n~g-~~~  139 (623)
T Consensus         1 P~VSViIPa~NE-~~~I~~~l~sl~~q~YP~~~~~I~VvDd-stD~t-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~Ka~   77 (232)
T cd06437           1 PMVTVQLPVFNE-KYVVERLIEAACALDYPKDRLEIQVLDD-STDET-VRLAREIVEEYAAQGVNIKHVRRADRTGYKAG   77 (232)
T ss_pred             CEEEEEEECCCC-HHHHHHHHHHHHHCCCCCCEEEEEEEEC-CCCHH-HHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH
T ss_conf             939999955898-8999999999996799998089999979-99669-99999999766641996899836988886699


Q ss_pred             HHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEECCCCC----CCHH-HHCC--
Q ss_conf             99999996599899997698752732079999998732475542022206758983654225667----8966-7414--
Q gi|254780918|r  140 ASNSAAQLATSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDKINENQIRSGPYFKYD----FNPE-LFHV--  212 (623)
Q Consensus       140 a~N~~l~~a~Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYsDe~~i~~~g~~~~p~fkp~----~~~~-~l~s--  212 (623)
T Consensus        78 aln~gl~~a~gd~i~~~DaD~~~~~d~L~~~~~~f-~~~~~g~v~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (232)
T cd06437          78 ALAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPYF-ADPKLGFVQTRWGHINANYSLLTRVQAMSLDYHFTIEQVARSST  156 (232)
T ss_pred             HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHH-CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999997789889997764473847999999983-19985999666432588867999999999999999999998825


Q ss_pred             ---CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCEEECCCCEEE
Q ss_conf             ---7854314576899999718878987730274136788642487522006842279
Q gi|254780918|r  213 ---HNMITHLGVYRTETFKKIGGFREKFEGAQDYDLVLRFLENIDLSQIIHIPRVLYH  267 (623)
Q Consensus       213 ---~nyi~~~~~~rr~~~~~iGgf~~~~~~~~D~Dl~lR~~~~~~~~~i~hip~vLy~  267 (623)
T Consensus       157 ~~~~~~~G~~~~~Rr~~l~~~Gg~~~~~-~~ED~~l~~r~~~~G--~ri~~~~~a~~~  211 (232)
T cd06437         157 GLFFNFNGTAGVWRKECIEDAGGWNHDT-LTEDLDLSYRAQLKG--WKFVYLDDVVVP  211 (232)
T ss_pred             CCCEECCCEEEEEEHHHHHHHCCCCCCC-CCHHHHHHHHHHHCC--CEEEEECCCEEE
T ss_conf             9934126515877599999857998866-101899999999879--989980687797