HHsearch alignment for GI: 254780918 and conserved domain: cd06437
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=99.97 E-value=4.1e-30 Score=202.75 Aligned_cols=194 Identities=25% Similarity=0.313 Sum_probs=137.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCCC--EEEEEECCCCCHHHHHHHHH----HHHHHCCCEEEEECCCCCC-HHH
Q ss_conf 9789997475898889999999998288997--48999877578067999999----9887579889998088885-648
Q gi|254780918|r 67 PLISVIMPVYKIKKEWLEMAIESVRSQIYSH--WELCIAEDCSGDIETVSLLK----KYANMDSRIKVVFRAKNGH-ISA 139 (623)
Q Consensus 67 P~iSIiip~yn~~~~~L~~~i~Si~~Qty~~--~EliivdD~S~d~~~~~~l~----~~~~~d~ri~~~~~~~n~g-~~~ 139 (623)
T Consensus 1 P~VSViIPa~NE-~~~I~~~l~sl~~q~YP~~~~~I~VvDd-stD~t-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~Ka~ 77 (232)
T cd06437 1 PMVTVQLPVFNE-KYVVERLIEAACALDYPKDRLEIQVLDD-STDET-VRLAREIVEEYAAQGVNIKHVRRADRTGYKAG 77 (232)
T ss_pred CEEEEEEECCCC-HHHHHHHHHHHHHCCCCCCEEEEEEEEC-CCCHH-HHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH
T ss_conf 939999955898-8999999999996799998089999979-99669-99999999766641996899836988886699
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEECCCCC----CCHH-HHCC--
Q ss_conf 99999996599899997698752732079999998732475542022206758983654225667----8966-7414--
Q gi|254780918|r 140 ASNSAAQLATSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDKINENQIRSGPYFKYD----FNPE-LFHV-- 212 (623)
Q Consensus 140 a~N~~l~~a~Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYsDe~~i~~~g~~~~p~fkp~----~~~~-~l~s-- 212 (623)
T Consensus 78 aln~gl~~a~gd~i~~~DaD~~~~~d~L~~~~~~f-~~~~~g~v~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (232)
T cd06437 78 ALAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPYF-ADPKLGFVQTRWGHINANYSLLTRVQAMSLDYHFTIEQVARSST 156 (232)
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHH-CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999997789889997764473847999999983-19985999666432588867999999999999999999998825
Q ss_pred ---CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCEEECCCCEEE
Q ss_conf ---7854314576899999718878987730274136788642487522006842279
Q gi|254780918|r 213 ---HNMITHLGVYRTETFKKIGGFREKFEGAQDYDLVLRFLENIDLSQIIHIPRVLYH 267 (623)
Q Consensus 213 ---~nyi~~~~~~rr~~~~~iGgf~~~~~~~~D~Dl~lR~~~~~~~~~i~hip~vLy~ 267 (623)
T Consensus 157 ~~~~~~~G~~~~~Rr~~l~~~Gg~~~~~-~~ED~~l~~r~~~~G--~ri~~~~~a~~~ 211 (232)
T cd06437 157 GLFFNFNGTAGVWRKECIEDAGGWNHDT-LTEDLDLSYRAQLKG--WKFVYLDDVVVP 211 (232)
T ss_pred CCCEECCCEEEEEEHHHHHHHCCCCCCC-CCHHHHHHHHHHHCC--CEEEEECCCEEE
T ss_conf 9934126515877599999857998866-101899999999879--989980687797