HHsearch alignment for GI: 254780918 and conserved domain: cd06442
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=99.78 E-value=1e-17 Score=126.77 Aligned_cols=205 Identities=19% Similarity=0.273 Sum_probs=138.5
Q ss_pred EEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 99953774556999998764207975157997148998168999999986308882799757888733889898786148
Q gi|254780918|r 328 IIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDNLSDDSKTFLYLQKIQKKYPNLRVITDNTHPFNYSRINNNATLHAK 407 (623)
Q Consensus 328 IIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn~S~d~~t~~~l~~~~~~~~~~~~i~~~~~~~n~s~~~N~g~~~a~ 407 (623)
T Consensus 1 IIIP~yNEe~~i~~~l~~i~~~~~~~~~eIIvVdDgStD-~T~~i~~~l~~~~~~~~~i~~~~-n~G~g~Ai~~G~~~a~ 78 (224)
T cd06442 1 IIIPTYNERENIPELIERLDAALKGIDYEIIVVDDNSPD-GTAEIVRELAKEYPRVRLIVRPG-KRGLGSAYIEGFKAAR 78 (224)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC-CCHHHHHHHHCCCCCEEEEECCC-CCCHHHHHHHHHHHHC
T ss_conf 399954878889999999998606899499999896973-71788865422477247863366-7872799999998601
Q ss_pred CCEEEEECCCCEEECHHHHHHHHHHHCCCCEE-EEEEEEECCCCCCCCCCCEEEECCEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 97474405882782816889988774289816-99537664676756778704413254067865664322565555764
Q gi|254780918|r 408 GQYFCFLNNDTEVINGQWLSEMMGIASQPQVG-AVGARLWYRRKKLWKRSKRLQHGGVIMGINNIAGHKNKHHKARCSVP 486 (623)
Q Consensus 408 geyilfLn~D~~v~~~~wL~~Ll~~~~~~~vG-~Vg~~ll~~~~~~~~~d~~iqhaG~v~g~~~~~~~~~~~~~~~~~~~ 486 (623)
T Consensus 79 ~~~i~~~DaD~q~-~p~~i~~li~~~~~~~~d~V~GsR~~~~--------~~~~~~~~-----------~r~~~s~--~~ 136 (224)
T cd06442 79 GDVIVVMDADLSH-PPEYIPELLEAQLEGGADLVIGSRYVEG--------GGVEGWGL-----------KRKLISR--GA 136 (224)
T ss_pred CCCEEEECCCCCC-CHHHHHHHHHHHHCCCCCEEEEEEECCC--------CCCCCCHH-----------HHHHHHH--HH
T ss_conf 7846886599976-2777899999987188724798876279--------86357706-----------6678888--88
Q ss_pred CCCCCCCCCCCCCCCCCHHEEEEEHHHHHHHCC-CCHHHHHHHCCHHHHHHHHHHCCCEEEECCCEEEEEECCCC
Q ss_conf 422223344444111011020438888987179-99768763231688999999749819984754999517733
Q gi|254780918|r 487 NYQAFAMHFTHSISAVTGACMVMSKKCFMHVGG-FDEKNTPVVFSDIDLCLRILEAGYRNVWTPHADLYHDESRT 560 (623)
Q Consensus 487 ~~~~~~~~~~~~~savtgacllirr~~f~~iGG-fDE~~~~~~~eDvDlclR~~~~G~r~v~~P~a~v~H~es~s 560 (623)
T Consensus 137 ~~i-~~~l~~~~i~D~~~gfr~~~~~~~~~i~~~~~~~~f~---~~~ei~~~~~~~~~ki~evpv~~~~R~~G~S 207 (224)
T cd06442 137 NLL-ARLLLGRKVSDPTSGFRAYRREVLEKLIDSLVSKGYK---FQLELLVRARRLGYRIVEVPITFVDREHGES 207 (224)
T ss_pred HHH-HHHCCCCEECCCCCCEEEEEHHHHHHHHHHCCCCCCC---CHHHHHHHHHHCCCEEEEEEEEECCCCCCCC
T ss_conf 876-3230584243179963998899999887754566630---1899999999889989999727779999803