HHsearch alignment for GI: 254780918 and conserved domain: cd06913
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=100.00 E-value=4.2e-45 Score=294.64 Aligned_cols=204 Identities=24% Similarity=0.368 Sum_probs=159.2
Q ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCC-EEEEEECCCCCHHHHHHHHHHHHHHC--CCEEEEECCC----CCCHHHHHHH
Q ss_conf 997475898889999999998288997-48999877578067999999988757--9889998088----8856489999
Q gi|254780918|r 71 VIMPVYKIKKEWLEMAIESVRSQIYSH-WELCIAEDCSGDIETVSLLKKYANMD--SRIKVVFRAK----NGHISAASNS 143 (623)
Q Consensus 71 Iiip~yn~~~~~L~~~i~Si~~Qty~~-~EliivdD~S~d~~~~~~l~~~~~~d--~ri~~~~~~~----n~g~~~a~N~ 143 (623)
T Consensus 1 VIiP~YN~-~~~l~~~l~Svl~Qty~~~~EiIiVDDgStD-~t~~ii~~~~~~~~~~~~~~~~~~~~~~~~~G~~~arN~ 78 (219)
T cd06913 1 IILPVHNG-EQWLDECLESVLQQDFEGTLELSVFNDASTD-KSAEIIEKWRKKLEDSGVIVLVGSHNSPSPKGVGYAKNQ 78 (219)
T ss_pred CEECCCCC-HHHHHHHHHHHHHCCCCCCEEEEEEECCCCC-CHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHH
T ss_conf 98867898-8999999999984889998999999899981-569999999986667776999823677664678999999
Q ss_pred HHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEECCCCCCCHHHHCCC------CC-C
Q ss_conf 9996599899997698752732079999998732475542022206758983654225667896674147------85-4
Q gi|254780918|r 144 AAQLATSEWLALLDHDDLLHPTALYYVADAINNNPNAEIIYSDEDKINENQIRSGPYFKYDFNPELFHVH------NM-I 216 (623)
Q Consensus 144 ~l~~a~Ge~i~~lD~DD~l~p~~L~~~~~~l~~~p~~~~iYsDe~~i~~~g~~~~p~fkp~~~~~~l~s~------ny-i 216 (623)
T Consensus 79 gi~~A~GeyI~flDsDD~~~p~~l~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (219)
T cd06913 79 AIAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPN-SIIGCQVRRIPEDSTERYTRWINTLTREQLLTQVYTSHGPTVI 157 (219)
T ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCC-CEEEEEEEEECCCCCEECCCCCCCCCHHHHHHHHHHHCCCCEE
T ss_conf 999778887886189764276599999999985999-6999878996699852313223568989999988761698344
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHHCCCCCCEEECCCCEEEEEECCCCCCCCC
Q ss_conf 31457689999971887898773-0274136788642487522006842279953388533880
Q gi|254780918|r 217 THLGVYRTETFKKIGGFREKFEG-AQDYDLVLRFLENIDLSQIIHIPRVLYHWRMHDNSTAQKI 279 (623)
Q Consensus 217 ~~~~~~rr~~~~~iGgf~~~~~~-~~D~Dl~lR~~~~~~~~~i~hip~vLy~~R~~~~s~~~~~ 279 (623)
T Consensus 158 ~~~~~~rr~~~~~~g~f~e~~~~~~ED~~~~~r~l~~~--~~i~~i~~~L~~YR~H~~s~T~s~ 219 (219)
T cd06913 158 MPTWFCSREWFSHVGPFDEGGKGVPEDLLFFYEHLRKG--GGVYRVDRCLLLYRYHPGATTHSV 219 (219)
T ss_pred EHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCC--CCEEEECCCEEEEEECCCCCCCCC
T ss_conf 00355329999992899965786702899999999749--969996997799997698550269