HHsearch alignment for GI: 254780918 and conserved domain: pfam05045
>pfam05045 RgpF Rhamnan synthesis protein F. This family consists of a group of proteins which are related to the Streptococcus rhamnose-glucose polysaccharide assembly protein (RgpF). Rhamnan backbones are found in several O polysaccharides of phytopathogenic bacteria and are regarded as pathogenic factors.
Probab=90.42 E-value=1.1 Score=22.44 Aligned_cols=320 Identities=13% Similarity=0.117 Sum_probs=138.7
Q ss_pred EEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCH-HHHHHHHHHH------CCCCEEEEECCCCCCCCCH-HHHHHH
Q ss_conf 9987757806799999998875798899980888856-4899999996------5998999976987527320-799999
Q gi|254780918|r 101 CIAEDCSGDIETVSLLKKYANMDSRIKVVFRAKNGHI-SAASNSAAQL------ATSEWLALLDHDDLLHPTA-LYYVAD 172 (623)
Q Consensus 101 iivdD~S~d~~~~~~l~~~~~~d~ri~~~~~~~n~g~-~~a~N~~l~~------a~Ge~i~~lD~DD~l~p~~-L~~~~~ 172 (623)
T Consensus 2 ~~V~N~~l~~~~~~~l~~~~~~-----~i~-ReN~G~D~~A~~~~~~~~G~e~l~~yDev~l~-NdT~~GPv~~~~~~f~ 74 (498)
T pfam05045 2 IFVSNSELSDESRKRLKDLTDE-----FLQ-RENKGFDVWAYRDGLEFIGFDKLSEYDEVTLM-NDTCFGPIFPFSEMFE 74 (498)
T ss_pred EEEECCCCCHHHHHHHHHHHCC-----EEE-EECCCCCHHHHHHHHHHHCHHHHCCCCEEEEE-CCCEECCCCCHHHHHH
T ss_conf 8998996798999999985160-----798-40588455999999998397876477769996-3642156864799999
Q ss_pred HHHHCCCCCCCCCCCEEECC-CCCEEEECCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHC--CCCCCCCCCCC-------
Q ss_conf 98732475542022206758-983654225667896674147854314576899999718--87898773027-------
Q gi|254780918|r 173 AINNNPNAEIIYSDEDKINE-NQIRSGPYFKYDFNPELFHVHNMITHLGVYRTETFKKIG--GFREKFEGAQD------- 242 (623)
Q Consensus 173 ~l~~~p~~~~iYsDe~~i~~-~g~~~~p~fkp~~~~~~l~s~nyi~~~~~~rr~~~~~iG--gf~~~~~~~~D------- 242 (623)
T Consensus 75 ~m~~-~~~DFWG-----it~~~~~~~~~~~~~~~~p~HlQS-----yF~~~r~~~~~s~~F~~yW~~~~~~~~~~~~I~~ 143 (498)
T pfam05045 75 EMER-RDCDFWG-----ITNHRAIKPNPFTGTGVLPEHIQS-----YFIAFRNSVLQSKAFRDYWENIPEINSYQDVIDH 143 (498)
T ss_pred HHHC-CCCCEEE-----ECCCCCCCCCCCCCCCCCHHHHHH-----HHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 9603-3797796-----557644678876676766688877-----8988643011688899998438876779999988
Q ss_pred CHH--HHHHHHCCC--------------CCCEEECCCCEEEE-----EECC----CCCCCCCHHHHHHHHHH-------H
Q ss_conf 413--678864248--------------75220068422799-----5338----85338801346899878-------9
Q gi|254780918|r 243 YDL--VLRFLENID--------------LSQIIHIPRVLYHW-----RMHD----NSTAQKIGNKNYAGKAG-------E 290 (623)
Q Consensus 243 ~Dl--~lR~~~~~~--------------~~~i~hip~vLy~~-----R~~~----~s~~~~~~~k~~~~~a~-------~ 290 (623)
T Consensus 144 ~E~~fT~~F~~~G~~~~~~~dt~~~~~~~p~~~~~~~~~~~~~~IlKrr~~F~k~~~~~~~~~~~~~l~~~l~~~t~Yp~ 223 (498)
T pfam05045 144 HETQFTKIFLDLGYSYEVVLDTDKYDSSYPVFLHPDFTYYNRTPILKRRVFFHDVKALDANQIILPRALEYIEENSDYDL 223 (498)
T ss_pred HHHHHHHHHHHCCCCEEEEECCHHCCCCCCCCCCCHHHHHCCCHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHHCCCCCH
T ss_conf 89999999987697369995522215668500372655307326764368754404543023115899999986689988
Q ss_pred HHHHHHHHHCCCCCCCCCCC-CCE-----EEE--CCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf 99999997413343223577-530-----121--3678888816999953774556999998764207975157997148
Q gi|254780918|r 291 RALNEHFQRTGIAAKAVFDG-AQY-----RTH--YMIPNPPPLVSIIIPTYNHHHLLKICLESIYHKTTYSSFEVIIIDN 362 (623)
Q Consensus 291 ~ai~~~l~R~g~~~~~~~~~-~~~-----r~~--~~~~~~~P~VSIIIp~~n~~~~l~~cl~Sl~~~t~y~~~EiivVdn 362 (623)
T Consensus 224 ~LI~~~~~r~~~p~~l~~n~~l~y~L~~~~~~~~~~~~~~~~kIav~~HvyY-~DLl~e~l~y~~~i--p~~~Dl~ITT~ 300 (498)
T pfam05045 224 SLIVKHVSRTSYPRDLNTNAALLSVLPDKYVKPDSAAVRDDQKIAVHAHVYY-VDMLDEILTAFKNI--PFSYDLIITTD 300 (498)
T ss_pred HHHHHHHHHHCCHHHHHHCCCCCEECCCCCCCCCCCCCCCCCEEEEEEEEEC-HHHHHHHHHHHHHC--CCCCCEEEECC
T ss_conf 9999987753187777523674423562003644333355785999999534-72699999999828--98741899859
Q ss_pred CCCCHHHHHHHHHHHHCCC---CCEEEEECCCCCCHHHHHHHHHH----HCCCCEEEEECCCCEEE-----CHHHHHH--
Q ss_conf 9981689999999863088---82799757888733889898786----14897474405882782-----8168899--
Q gi|254780918|r 363 LSDDSKTFLYLQKIQKKYP---NLRVITDNTHPFNYSRINNNATL----HAKGQYFCFLNNDTEVI-----NGQWLSE-- 428 (623)
Q Consensus 363 ~S~d~~t~~~l~~~~~~~~---~~~~i~~~~~~~n~s~~~N~g~~----~a~geyilfLn~D~~v~-----~~~wL~~-- 428 (623)
T Consensus 301 ~---~ek~~~i~~~l~~~~~~~~~~V~vv~NRGRDv~pfL-v~~~~~l~~~~YD~v~hiHtKKS~~~~~~~G~~wr~~l~ 376 (498)
T pfam05045 301 T---DDKKAEIEEILAKRKGAKNAIVRVVQNRGRDMSPLL-ISLKDELVDDRYDLVCRFHTKKSPQADFWAGESFKEELI 376 (498)
T ss_pred C---HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHH-HHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 8---778999999998566777328999057774178899-998877453677489996557476668640579999999
Q ss_pred ------------HHHHH-CCCCEEEEEEEE
Q ss_conf ------------88774-289816995376
Q gi|254780918|r 429 ------------MMGIA-SQPQVGAVGARL 445 (623)
Q Consensus 429 ------------Ll~~~-~~~~vG~Vg~~l 445 (623)
T Consensus 377 ~nLlgs~~~v~~Il~~F~~~p~lGlv~p~~ 406 (498)
T pfam05045 377 DNLLKPRGYADNILAMFEQNPSIGLVIPDI 406 (498)
T ss_pred HHHCCCHHHHHHHHHHHHHCCCEEEECCCH
T ss_conf 972198899999999871098636873872