HHsearch alignment for GI: 254780919 and conserved domain: COG1898
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane].
Probab=100.00 E-value=0 Score=379.78 Aligned_cols=168 Identities=51% Similarity=0.960 Sum_probs=162.3
Q ss_pred CCCCCEEEEECCEEEECCCEEEEEECHHHHHHCCCCCCEEEEEEEECCCCCEEEECCCCCCCCCHHHHEEECHHHHHHHH
Q ss_conf 96575399707622037950421108898986799874134423312520000000155555440121000022222343
Q gi|254780919|r 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIA 80 (198)
Q Consensus 1 L~I~gv~ii~~~~f~D~RG~f~e~f~~~~~~~~~~~~~~~Q~n~S~s~~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvv 80 (198)
T Consensus 6 ~~i~gv~~~~~~~~~D~RG~F~E~~~~~~~~~~~~~~~~~Q~n~S~S~-~GvlRGlHyq~~~--q~klv~~v~G~v~dv~ 82 (173)
T COG1898 6 TAIPGVLIIEPKVFGDERGFFTETFKAEEFSTLGLPLDFVQDNHSFSY-PGVLRGLHYQHKP--QGKLVRVVSGKVFDVA 82 (173)
T ss_pred CCCCCEEEECCCCCCCCCCEEEEHHHHHHHHHCCCCCCCCCCEEEEEC-CCEEEEEECCCCC--CCEEEEEECCCEEEEE
T ss_conf 578951898885446666512000123455421676653661588844-8815778711577--8759998057099999
Q ss_pred HHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCCHHCEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 34064213331001136623653023330232203453074533897217876710170216888011774788876763
Q gi|254780919|r 81 VDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILP 160 (198)
Q Consensus 81 vDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~~~~~y~p~~e~~i~~~Dp~l~i~Wp~~~~~~p 160 (198)
T Consensus 83 vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~~~~y~~~~~Y~p~~~~~i~~nDp~i~i~Wp~~~---~ 159 (173)
T COG1898 83 VDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDAEVVYKVTEEYDPEHERGIPWNDPTIGIDWPLKD---P 159 (173)
T ss_pred EECCCCCCCCCEEEEEEECCCCCEEEEECCCCCCEEEECCCCEEEEEEECCEECCCCCCCCCCCCCCCCCCCCCCC---C
T ss_conf 9766999870259999964787249994785423059816853999972340475566444578875565876676---3
Q ss_pred EECHHHHCCCCHHH
Q ss_conf 01678845998778
Q gi|254780919|r 161 SVSEKDQNLPFLNQ 174 (198)
Q Consensus 161 iiS~kD~~~p~l~d 174 (198)
T Consensus 160 ~~S~kD~~~p~l~~ 173 (173)
T COG1898 160 ILSDKDAAAPLLKE 173 (173)
T ss_pred EECHHHHCCCCCCC
T ss_conf 50887836885479