HHsearch alignment for GI: 254780919 and conserved domain: pfam00908

>pfam00908 dTDP_sugar_isom dTDP-4-dehydrorhamnose 3,5-epimerase. This family catalyse the isomerisation of dTDP-4-dehydro-6-deoxy -D-glucose with dTDP-4-dehydro-6-deoxy-L-mannose. The EC number of this enzyme is 5.1.3.13.
Probab=100.00  E-value=0  Score=427.37  Aligned_cols=174  Identities=51%  Similarity=0.956  Sum_probs=168.8

Q ss_pred             CCCCCEEEEECCEEEECCCEEEEEECHHHHHHCCCCCCEEEEEEEECCCCCEEEECCCCCCCCCHHHHEEECHHHHHHHH
Q ss_conf             96575399707622037950421108898986799874134423312520000000155555440121000022222343
Q gi|254780919|r    1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIA   80 (198)
Q Consensus         1 L~I~gv~ii~~~~f~D~RG~f~e~f~~~~~~~~~~~~~~~Q~n~S~s~~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvv   80 (198)
T Consensus         4 t~I~gv~~i~~~~~~D~RG~f~e~f~~~~~~~~~~~~~~~Q~n~S~S-~kgvlRGlH~q~~p~~q~Klv~ci~G~i~dvv   82 (177)
T pfam00908         4 LAIPGVLLIEPRVFGDERGFFSESFNAEEFEEAGGHPDFVQDNHSFS-SRGVLRGLHYQQPPPAQGKLVRCVRGEVFDVA   82 (177)
T ss_pred             CCCCCEEEEECCEEECCCCCEEEEECHHHHHHHCCCCCCCEEEEEEC-CCCCEEEECEECCCCCCEEEEEEEECEEEEEE
T ss_conf             76898799989524879927888816789997489998738998896-69918988502899886249999406698999


Q ss_pred             HHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCCHHCEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             34064213331001136623653023330232203453074533897217876710170216888011774788876763
Q gi|254780919|r   81 VDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILP  160 (198)
Q Consensus        81 vDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~~~~~y~p~~e~~i~~~Dp~l~i~Wp~~~~~~p  160 (198)
T Consensus        83 vDlR~~S~Tfgk~~~~~L~~~~~~~l~IP~G~aHGf~~L~d~~~v~Y~~~~~y~p~~e~gi~~~Dp~l~i~WP~~~~~~~  162 (177)
T pfam00908        83 VDIRKGSPTFGKWVGVELSAENRRQLWIPEGFAHGFLALSDDAEVLYKVSAYYSPEAERGIRWNDPAIGIDWPLADGPEP  162 (177)
T ss_pred             EECCCCCCCCCCEEEEEECCCCCCEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCEEECCCCCHHCCCCCCCCCCCC
T ss_conf             98988989888489999767757559968986389998079979999837623866650675899520866888999776


Q ss_pred             EECHHHHCCCCHHHC
Q ss_conf             016788459987781
Q gi|254780919|r  161 SVSEKDQNLPFLNQI  175 (198)
Q Consensus       161 iiS~kD~~~p~l~d~  175 (198)
T Consensus       163 iiS~kD~~~p~l~~a  177 (177)
T pfam00908       163 SLSEKDANAPLLAEA  177 (177)
T ss_pred             EECHHHCCCCCCCCC
T ss_conf             887899199980319