HHsearch alignment of GI: 254780919 and MMDB domain: 1y9q_A_77-192

>1y9q_A (A:77-192) Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae}
Probab=91.10  E-value=0.58  Score=25.67  Aligned_cols=65  Identities=9%  Similarity=-0.007  Sum_probs=44.9

Q ss_pred             CCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf             20000000155555440121000022222343340642133310011366236530233302322034530745338972
Q gi|254780919|r   49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYK  128 (198)
Q Consensus        49 ~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~  128 (198)
                      .+|.-...|.+..+  ...+++|++|++...+=+           ..+.|.+  +.++++|+|+.|++...++.......
T Consensus        36 ~pG~~~~~~~h~h~--~~e~~~Vl~G~~~~~~~~-----------~~~~l~~--Gd~i~~p~~~~H~~~n~~~~~~~~l~  100 (116)
T 1y9q_A           36 LDHHQQXSSPHALG--VIEYIHVLEGIXKVFFDE-----------QWHELQQ--GEHIRFFSDQPHGYAAVTEKAVFQNI  100 (116)
T ss_dssp             CTTCEEEECCCSTT--CEEEEEEEESCEEEEETT-----------EEEEECT--TCEEEEECSSSEEEEESSSCEEEEEE
T ss_pred             EECCCCCCCCCCCC--CEEEEEEEEEEEEEEECC-----------EEEEECC--CCEEEECCCCCEEEEECCCCCEEEEE
T ss_conf             53135665210036--367999999999999999-----------9999789--97899879998886968978899999