Query gi|254780919|ref|YP_003065332.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 198 No_of_seqs 134 out of 2337 Neff 5.7 Searched_HMMs 23785 Date Tue May 31 22:20:45 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780919.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1upi_A DTDP-4-dehydrorhamnose 100.0 0 0 418.4 13.5 178 1-179 26-204 (225) 2 2c0z_A NOVW; isomerase, epimer 100.0 0 0 411.3 11.7 173 1-177 15-188 (216) 3 1ep0_A DTDP-6-deoxy-D-XYLO-4-h 100.0 0 0 407.6 13.0 174 1-176 9-182 (185) 4 2ixk_A DTDP-4-dehydrorhamnose 100.0 0 0 403.6 13.3 172 1-176 9-181 (184) 5 1dzr_A DTDP-4-dehydrorhamnose 100.0 0 0 401.8 13.2 173 1-176 7-180 (183) 6 1oi6_A PCZA361.16; epimerase, 100.0 0 0 400.7 13.7 178 1-181 6-185 (205) 7 1wlt_A 176AA long hypothetical 100.0 0 0 381.5 12.0 166 1-176 28-193 (196) 8 1nxm_A DTDP-6-deoxy-D-XYLO-4-h 100.0 0 0 365.3 13.2 172 2-184 17-197 (197) 9 3ejk_A DTDP sugar isomerase; Y 100.0 1.4E-45 0 280.7 9.6 148 1-156 18-167 (174) 10 2pa7_A DTDP-6-deoxy-3,4-keto-h 99.9 1.6E-24 6.7E-29 160.3 6.6 119 5-139 4-122 (141) 11 2zkl_A Capsular polysaccharide 99.8 1.1E-19 4.8E-24 132.4 7.4 112 8-137 249-361 (369) 12 1j58_A YVRK protein; cupin, de 97.3 0.00015 6.5E-09 45.4 4.0 98 16-131 60-157 (385) 13 2vqa_A SLL1358 protein, MNCA; 96.7 0.004 1.7E-07 37.2 6.3 100 14-130 31-131 (361) 14 1fxz_A Glycinin G1; proglycini 96.3 0.011 4.6E-07 34.7 6.8 98 19-131 320-418 (476) 15 2xlg_A SLL1785 protein, CUCA; 95.7 0.0081 3.4E-07 35.5 3.9 75 49-126 51-132 (239) 16 3kgl_A Cruciferin; 11S SEED gl 95.6 0.011 4.8E-07 34.6 4.3 75 48-132 330-404 (466) 17 2d5f_A Glycinin A3B4 subunit; 95.5 0.01 4.4E-07 34.8 3.9 73 49-131 375-447 (493) 18 3c3v_A Arachin ARAH3 isoform; 95.4 0.014 6E-07 34.1 4.2 74 49-132 380-453 (510) 19 1j58_A YVRK protein; cupin, de 95.4 0.013 5.5E-07 34.3 4.0 66 48-124 264-329 (385) 20 3ksc_A LEGA class, prolegumin; 95.3 0.016 6.9E-07 33.7 4.2 74 49-132 366-439 (496) 21 3d0j_A Uncharacterized protein 95.2 0.044 1.8E-06 31.3 6.3 112 9-138 4-118 (140) 22 3fz3_A Prunin; TREE NUT allerg 95.0 0.018 7.5E-07 33.5 3.8 74 49-132 402-475 (531) 23 2vqa_A SLL1358 protein, MNCA; 95.0 0.025 1E-06 32.7 4.4 67 48-125 241-307 (361) 24 2e9q_A 11S globulin subunit be 95.0 0.02 8.2E-07 33.3 3.8 74 48-131 329-402 (459) 25 2ea7_A 7S globulin-1; beta bar 94.9 0.021 8.9E-07 33.1 4.0 77 49-131 274-357 (434) 26 2phl_A Phaseolin; plant SEED s 94.6 0.036 1.5E-06 31.7 4.5 76 49-130 247-323 (397) 27 2o8q_A Hypothetical protein; c 94.5 0.039 1.6E-06 31.6 4.5 67 49-130 51-117 (134) 28 2cav_A Protein (canavalin); vi 94.5 0.032 1.4E-06 32.0 4.0 74 49-128 289-367 (445) 29 1x82_A Glucose-6-phosphate iso 94.4 0.034 1.4E-06 31.9 4.0 69 49-126 75-149 (190) 30 2oa2_A BH2720 protein; 1017534 93.9 0.066 2.8E-06 30.2 4.5 73 47-129 49-121 (148) 31 1fi2_A Oxalate oxidase, germin 93.5 0.21 8.8E-06 27.3 6.6 109 17-137 51-160 (201) 32 1juh_A Quercetin 2,3-dioxygena 93.4 0.08 3.4E-06 29.8 4.3 69 50-129 57-127 (350) 33 2q30_A Uncharacterized protein 93.4 0.088 3.7E-06 29.5 4.5 63 48-124 40-102 (110) 34 1uij_A Beta subunit of beta co 93.3 0.072 3E-06 30.0 4.0 61 49-122 57-117 (416) 35 1juh_A Quercetin 2,3-dioxygena 92.9 0.037 1.6E-06 31.7 2.0 90 48-152 258-350 (350) 36 1lr5_A Auxin binding protein 1 92.8 0.067 2.8E-06 30.2 3.1 72 49-128 49-120 (163) 37 3ht1_A REMF protein; cupin fol 92.5 0.22 9.1E-06 27.3 5.4 73 38-127 38-110 (145) 38 2i45_A Hypothetical protein; n 92.1 0.091 3.8E-06 29.4 3.2 59 51-125 38-96 (107) 39 1y3t_A Hypothetical protein YX 91.9 0.14 6E-06 28.3 4.0 66 49-130 54-119 (337) 40 2qnk_A 3-hydroxyanthranilate 3 91.8 0.11 4.5E-06 29.0 3.2 65 50-127 40-104 (286) 41 1o4t_A Putative oxalate decarb 91.4 0.18 7.6E-06 27.7 4.1 63 48-126 64-126 (133) 42 1dgw_A Canavalin; duplicated s 91.2 0.17 7.2E-06 27.8 3.7 94 12-123 13-110 (178) 43 3ibm_A Cupin 2, conserved barr 91.0 0.21 8.9E-06 27.3 4.0 65 49-130 64-128 (167) 44 1y3t_A Hypothetical protein YX 90.5 0.24 1E-05 27.0 4.0 66 49-130 226-291 (337) 45 3k2o_A Bifunctional arginine d 90.2 0.4 1.7E-05 25.7 4.9 79 42-125 174-285 (336) 46 2pfw_A Cupin 2, conserved barr 89.5 0.33 1.4E-05 26.2 4.0 61 48-126 41-101 (116) 47 1v70_A Probable antibiotics sy 89.4 0.32 1.4E-05 26.3 3.9 65 49-129 36-100 (105) 48 3fjs_A Uncharacterized protein 89.3 0.46 1.9E-05 25.4 4.6 66 48-130 43-108 (114) 49 3kv9_A JMJC domain-containing 88.4 0.42 1.8E-05 25.6 4.0 86 35-125 170-274 (397) 50 2b8m_A Hypothetical protein MJ 87.9 0.4 1.7E-05 25.7 3.6 65 49-129 35-99 (117) 51 1uij_A Beta subunit of beta co 87.9 0.42 1.8E-05 25.6 3.7 78 48-131 256-341 (416) 52 3k3o_A PHF8, PHD finger protei 87.8 0.32 1.3E-05 26.3 3.0 81 40-125 147-246 (371) 53 2yu1_A JMJC domain-containing 87.7 0.34 1.4E-05 26.1 3.1 82 40-126 196-296 (451) 54 2ozj_A Cupin 2, conserved barr 87.6 0.37 1.5E-05 26.0 3.2 63 49-128 46-108 (114) 55 3cew_A Uncharacterized cupin p 87.5 0.39 1.7E-05 25.8 3.3 61 49-125 34-95 (125) 56 3d82_A Cupin 2, conserved barr 87.4 0.28 1.2E-05 26.6 2.5 56 54-126 42-97 (102) 57 2d40_A Z3393, putative gentisa 86.5 0.45 1.9E-05 25.5 3.1 65 49-129 108-172 (354) 58 1yhf_A Hypothetical protein SP 86.2 0.57 2.4E-05 24.9 3.5 61 49-127 48-108 (115) 59 3h7j_A Bacilysin biosynthesis 86.1 1.7 7.1E-05 22.1 6.0 97 11-134 15-111 (243) 60 3h8u_A Uncharacterized conserv 85.2 0.84 3.5E-05 23.9 4.0 66 49-129 47-112 (125) 61 1vj2_A Novel manganese-contain 84.1 1.8 7.6E-05 22.0 5.3 72 38-129 47-118 (126) 62 1sq4_A GLXB, glyoxylate-induce 83.9 1.3 5.5E-05 22.8 4.5 84 36-136 65-148 (278) 63 2ozi_A Hypothetical protein RP 83.6 0.67 2.8E-05 24.4 3.0 63 49-124 25-87 (98) 64 2phd_A Gentisate 1,2-dioxygena 83.3 0.9 3.8E-05 23.7 3.5 65 49-129 111-175 (368) 65 1sfn_A Conserved hypothetical 82.5 2.5 0.00011 21.1 5.7 73 35-129 46-118 (246) 66 1vrb_A Putative asparaginyl hy 82.1 1 4.4E-05 23.3 3.5 77 39-122 140-244 (342) 67 2opk_A Hypothetical protein; p 81.9 0.98 4.1E-05 23.5 3.3 88 17-128 18-105 (112) 68 2f4p_A Hypothetical protein TM 81.6 1.5 6.4E-05 22.4 4.1 66 47-129 54-119 (147) 69 3kgz_A Cupin 2 conserved barre 80.3 1.8 7.4E-05 22.0 4.1 64 49-129 52-115 (156) 70 3lwc_A Uncharacterized protein 80.0 0.99 4.2E-05 23.5 2.8 69 49-135 48-116 (119) 71 1zrr_A E-2/E-2' protein; nicke 79.5 0.42 1.8E-05 25.6 0.7 65 49-122 84-148 (179) 72 1rc6_A Hypothetical protein YL 79.0 2.5 0.0001 21.2 4.5 81 38-135 58-138 (261) 73 2ece_A 462AA long hypothetical 78.5 0.35 1.5E-05 26.0 0.1 16 79-94 46-61 (462) 74 3jzv_A Uncharacterized protein 77.9 2.2 9.1E-05 21.5 4.0 63 49-129 61-123 (166) 75 3kv5_D JMJC domain-containing 77.5 2.7 0.00012 20.9 4.4 83 39-126 265-366 (488) 76 3d8c_A Hypoxia-inducible facto 77.3 3.8 0.00016 20.1 5.1 76 40-122 183-287 (349) 77 3kv4_A PHD finger protein 8; e 76.5 1.9 8.1E-05 21.8 3.4 80 41-125 232-330 (447) 78 2gu9_A Tetracenomycin polyketi 76.2 4.1 0.00017 19.9 5.5 65 49-129 29-95 (113) 79 2vpv_A Protein MIF2, MIF2P; nu 75.5 2.1 9E-05 21.5 3.4 52 66-130 111-162 (166) 80 1sef_A Conserved hypothetical 74.8 2.8 0.00012 20.8 3.9 57 66-135 85-141 (274) 81 2xdv_A MYC-induced nuclear ant 74.0 2.2 9.1E-05 21.5 3.1 76 40-122 139-225 (442) 82 3n9n_A Putative uncharacterize 73.2 2.8 0.00012 20.9 3.5 78 40-122 296-392 (528) 83 2pyt_A Ethanolamine utilizatio 72.0 2.5 0.0001 21.2 3.0 52 64-129 74-125 (133) 84 2fqp_A Hypothetical protein BP 70.2 3.6 0.00015 20.2 3.6 63 48-124 25-87 (97) 85 1vr3_A Acireductone dioxygenas 67.4 4.1 0.00017 19.9 3.3 74 41-122 76-153 (191) 86 1yfu_A 3-hydroxyanthranilate-3 66.2 6.6 0.00028 18.7 4.2 85 49-147 43-127 (174) 87 3myx_A Uncharacterized protein 64.5 4.8 0.0002 19.5 3.2 56 63-132 63-118 (238) 88 3kmh_A D-lyxose isomerase; cup 63.9 3.7 0.00015 20.2 2.5 68 49-121 114-197 (246) 89 3bal_A Acetylacetone-cleaving 61.3 6.9 0.00029 18.6 3.6 69 49-132 54-122 (153) 90 3i7d_A Sugar phosphate isomera 56.5 7.6 0.00032 18.4 3.1 66 49-130 51-119 (163) 91 1xe7_A YML079WP, hypothetical 56.4 9.1 0.00038 17.9 3.5 113 10-134 38-172 (203) 92 1y9q_A Transcriptional regulat 55.4 9.5 0.0004 17.8 3.4 49 66-127 127-175 (192) 93 1znp_A Hypothetical protein AT 54.1 11 0.00048 17.4 5.2 112 10-135 15-130 (154) 94 3l2h_A Putative sugar phosphat 50.7 13 0.00054 17.0 3.5 67 49-131 54-122 (162) 95 1dgw_X Canavalin; duplicated s 49.5 5.3 0.00022 19.3 1.4 66 12-85 11-77 (79) 96 3es1_A Cupin 2, conserved barr 48.0 12 0.00051 17.2 3.0 63 49-128 87-150 (172) 97 1qwr_A Mannose-6-phosphate iso 41.8 18 0.00076 16.2 3.3 21 95-117 159-179 (319) 98 1pmi_A PMI, phosphomannose iso 37.3 21 0.00089 15.8 3.7 40 94-135 266-313 (440) 99 2wfp_A Mannose-6-phosphate iso 36.8 18 0.00077 16.2 2.5 39 95-135 241-287 (394) 100 3cjx_A Protein of unknown func 27.2 32 0.0013 14.8 2.9 64 49-130 51-117 (165) 101 3o14_A Anti-ecfsigma factor, C 24.6 35 0.0015 14.5 5.4 73 49-144 51-123 (223) 102 3ebr_A Uncharacterized RMLC-li 21.0 42 0.0018 14.1 3.0 55 49-122 50-104 (159) 103 2bnm_A Epoxidase; oxidoreducta 20.0 44 0.0018 14.0 3.5 55 66-129 141-196 (198) No 1 >1upi_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: CME; 1.7A {Mycobacterium tuberculosis} SCOP: b.82.1.1 PDB: 2ixc_A* 1pm7_A* Probab=100.00 E-value=0 Score=418.37 Aligned_cols=178 Identities=32% Similarity=0.608 Sum_probs=170.6 Q ss_pred CCCCCEEEEECCEEEECCCEEEEEECHHHHHHC-CCCCCEEEEEEEECCCCCEEEECCCCCCCCCHHHHEEECHHHHHHH Q ss_conf 965753997076220379504211088989867-9987413442331252000000015555544012100002222234 Q gi|254780919|r 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDI 79 (198) Q Consensus 1 L~I~gv~ii~~~~f~D~RG~f~e~f~~~~~~~~-~~~~~~~Q~n~S~s~~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dv 79 (198) |+|+||+++++++|.|+||+|.|+|+.+.++++ +.++.|+|+|+|+| +||||||||||.+|++|+|||+|++|+|+|| T Consensus 26 ~~I~Gv~li~~~~f~D~RG~F~e~f~~~~~~~~~~~~~~~~Q~n~S~S-~kgvlRGlH~Q~~p~~q~Klv~ci~G~I~dv 104 (225) T 1upi_A 26 LDVPGAWEITPTIHVDSRGLFFEWLTDHGFRAFAGHSLDVRQVNCSVS-SAGVLRGLHFAQLPPSQAKYVTCVSGSVFDV 104 (225) T ss_dssp CSSTTEEEEECCEEEETTEEEECSCCHHHHHHHHSSCCCCCEEEEEEE-CTTBEEEEEEECTTTCCCEEEEEEESEEEEE T ss_pred CCCCCEEEEECCCEECCCCCEEEEECHHHHHHHHCCCCCCCEEEEEEC-CCCEEEEEEEECCCCCEEEEEEEECCEEEEE T ss_conf 638976999796267899387785126799986299988762798886-6994999974158887657878540689999 Q ss_pred HHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCCHHCEECCCCCCCCCCCCCCCCCCC Q ss_conf 33406421333100113662365302333023220345307453389721787671017021688801177478887676 Q gi|254780919|r 80 AVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTIL 159 (198) Q Consensus 80 vvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~~~~~y~p~~e~~i~~~Dp~l~i~Wp~~~~~~ 159 (198) +||+|++|||||+|.+++|+++++.+||||+||||||+||+|+|+++|+|+++|+|+.|.+|+|+||.|+|+||+.+... T Consensus 105 vvDlRk~S~Tfgk~~~~~Ls~~~~~~l~IP~G~aHGf~tL~d~t~v~Y~~s~~y~p~~e~~i~~~Dp~l~I~Wp~~~~~~ 184 (225) T 1upi_A 105 VVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLALQDNSTVMYLCSAEYNPQREHTICATDPTLAVDWPLVDGAA 184 (225) T ss_dssp EECCCBTCTTTTCEEEEEEETTTCCEEEECTTCEEEEEECSSSEEEEEEESSCCCTTTEEECCTTCTTTCCCCCCSTTCC T ss_pred EEEECCCCCCCCEEEEEEEECCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCC T ss_conf 97300377648849999955177526984899648999727886899966885083576446489801197899989878 Q ss_pred CEECHHHHCCCCHHHCCCCC Q ss_conf 30167884599877818551 Q gi|254780919|r 160 PSVSEKDQNLPFLNQIDSPF 179 (198) Q Consensus 160 piiS~kD~~~p~l~d~~~~f 179 (198) ||||+||+++|+|+|+.+.+ T Consensus 185 ~IiS~kD~~~p~l~d~~~~~ 204 (225) T 1upi_A 185 PSLSDRDAAAPSFEDVRASG 204 (225) T ss_dssp CBCCHHHHTCCCHHHHHHTT T ss_pred CEECHHHCCCCCHHHHHHCC T ss_conf 68798993998989997679 No 2 >2c0z_A NOVW; isomerase, epimerase, antibiotic biosynthesis, RMLC-like cupin; 1.60A {Streptomyces sphaeroides} SCOP: b.82.1.1 Probab=100.00 E-value=0 Score=411.34 Aligned_cols=173 Identities=32% Similarity=0.572 Sum_probs=167.1 Q ss_pred CCCCCEEEEECCEEEECCCEEEEEECHHHHHHC-CCCCCEEEEEEEECCCCCEEEECCCCCCCCCHHHHEEECHHHHHHH Q ss_conf 965753997076220379504211088989867-9987413442331252000000015555544012100002222234 Q gi|254780919|r 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDI 79 (198) Q Consensus 1 L~I~gv~ii~~~~f~D~RG~f~e~f~~~~~~~~-~~~~~~~Q~n~S~s~~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dv 79 (198) |+|+||++++++.|.|+||+|.|+|+.+++.+. +.+++|+|+|+|.| +||||||||||.+|++|+|||+|++|+|+|| T Consensus 15 ~~I~Gv~ii~~~~f~D~RG~f~e~f~~~~~~~~~~~~~~f~Q~n~S~S-~kgvlRGlH~Q~~p~~q~Klv~~i~G~I~dv 93 (216) T 2c0z_A 15 LGIEGVWEITPEQRADPRGVFLDWYHVDRFAEAIGRPLRLAQANLSVS-VRGVVRGIHFVDVPPGQAKYVTCVRGAVFDV 93 (216) T ss_dssp CSSTTEEEEECEEEEETTEEEEECCCHHHHHHHHSSCCCCCEEEEEEE-ETTBEEEEEEECTTTCCCEEEEEEESEEEEE T ss_pred CCCCCEEEEECCCCCCCCCCEEEEECHHHHHHHHCCCCCCEEEEEEEC-CCCEEEEEEECCCCCCHHEEEEEECCEEEEE T ss_conf 428986999798349889398988669999996699987317898564-6986898898157786010467506589999 Q ss_pred HHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCCHHCEECCCCCCCCCCCCCCCCCCC Q ss_conf 33406421333100113662365302333023220345307453389721787671017021688801177478887676 Q gi|254780919|r 80 AVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTIL 159 (198) Q Consensus 80 vvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~~~~~y~p~~e~~i~~~Dp~l~i~Wp~~~~~~ 159 (198) +||+|++|||||++..++|+++++++||||+||||||+||+|+|+++|++|++|+|++|.+|+|+||.|+|+||+++ T Consensus 94 vvDlR~~S~T~gk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~t~v~Y~~s~~y~p~~e~~i~~~Dp~l~i~Wp~~~--- 170 (216) T 2c0z_A 94 VVDLRVGSPTYGCWEGTRLDDVSRRAVYLSEGIGHGFCAISDEATLCYLSSGTYDPATEHGVHPLDPELAIDWPTGT--- 170 (216) T ss_dssp EEECCBTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEEESSCCCTTTEEEBCTTCTTTCCCCSCSS--- T ss_pred EEEECCCCCCCCEEEEEECCCCCCCEEEECCCCEEEEEEECCCCEEEEECCCCCCCCCCEEECCCCCCCCCCCCCCC--- T ss_conf 98611478856558888448997465981798606899845865778963874486664136799820098999898--- Q ss_pred CEECHHHHCCCCHHHCCC Q ss_conf 301678845998778185 Q gi|254780919|r 160 PSVSEKDQNLPFLNQIDS 177 (198) Q Consensus 160 piiS~kD~~~p~l~d~~~ 177 (198) ||||+||+++|.|+|++. T Consensus 171 ~ilS~kD~~~p~l~~~~~ 188 (216) T 2c0z_A 171 PLLSPRDQDALLLAEARD 188 (216) T ss_dssp CBCCHHHHTCBCHHHHHH T ss_pred CCCCHHHHCCCCHHHHHH T ss_conf 880878908999799986 No 3 >1ep0_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; racemase, DTDP-4-dehydrorhamnose epimerase, structural genomics, PSI; 1.50A {Methanothermobacterthermautotrophicus} SCOP: b.82.1.1 PDB: 1epz_A* Probab=100.00 E-value=0 Score=407.57 Aligned_cols=174 Identities=44% Similarity=0.760 Sum_probs=167.7 Q ss_pred CCCCCEEEEECCEEEECCCEEEEEECHHHHHHCCCCCCEEEEEEEECCCCCEEEECCCCCCCCCHHHHEEECHHHHHHHH Q ss_conf 96575399707622037950421108898986799874134423312520000000155555440121000022222343 Q gi|254780919|r 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIA 80 (198) Q Consensus 1 L~I~gv~ii~~~~f~D~RG~f~e~f~~~~~~~~~~~~~~~Q~n~S~s~~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvv 80 (198) ++|+||++++++.|.|+||+|.|+|+.+++.+.+.++.|+|+|+|.| +||||||||||.+| +|+|||+|++|+|+||+ T Consensus 9 t~I~gv~ii~~~~f~D~RG~f~e~f~~~~~~~~~~~~~~~q~n~s~s-~kgvlRG~H~q~~~-~q~Kli~~i~G~i~dv~ 86 (185) T 1ep0_A 9 TSLDGAIIIEPEVYTDERGYFMETFNEAIFQENGLEVRFVQDNESMS-VRGVLRGLHFQREK-PQGKLVRVIRGEIFDVA 86 (185) T ss_dssp CSSTTCEEEEECEEEETTEEEECCCCHHHHHHTTCCCCCCEEEEEEE-ETTBEEEEEEESSS-CCCEEEEEEESEEEEEE T ss_pred CCCCCEEEEECCEEECCCCCEEEEECHHHHHHHCCCCCCEEEEEEEE-CCCEEEEEEECCCC-CEEEEEEEEEEEEEEEE T ss_conf 52898499979735989908999983457886399987038999883-59849999877999-84069999774899999 Q ss_pred HHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCCHHCEECCCCCCCCCCCCCCCCCCCC Q ss_conf 34064213331001136623653023330232203453074533897217876710170216888011774788876763 Q gi|254780919|r 81 VDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILP 160 (198) Q Consensus 81 vDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~~~~~y~p~~e~~i~~~Dp~l~i~Wp~~~~~~p 160 (198) ||+|++|||||+|..++|+++++++|+||+||||||+||+|+|+++|++|++|+|++|.||+|+||.|+|+||++....| T Consensus 87 vDlR~~S~tfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~v~Y~~s~~y~p~~e~gi~~~Dp~l~i~WP~~~~~~~ 166 (185) T 1ep0_A 87 VDLRKNSDTYGEWTGVRLSDENRREFFIPEGFAHGFLALSDECIVNYKCTELYHPEYDSGIPWDDPDIGIDWPLEMVDDL 166 (185) T ss_dssp EECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEEESSCCCGGGEEECCTTCTTTCCCCCGGGCSSC T ss_pred EECCCCCCCCCCCEEEEECCCCCCEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC T ss_conf 95878988657420458767655217827983589998057518999748866855540475888201988999888887 Q ss_pred EECHHHHCCCCHHHCC Q ss_conf 0167884599877818 Q gi|254780919|r 161 SVSEKDQNLPFLNQID 176 (198) Q Consensus 161 iiS~kD~~~p~l~d~~ 176 (198) |||+||+++|+|+|++ T Consensus 167 iiS~kD~~~~~l~~~~ 182 (185) T 1ep0_A 167 IISEKDRNWKPLRENP 182 (185) T ss_dssp BCCHHHHTCCCTTTSC T ss_pred EECHHHCCCCCHHHCC T ss_conf 9888994998926450 No 4 >2ixk_A DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, lipopolysaccharide biosynthesis, epimerise, epimerize; HET: TDO; 1.7A {Pseudomonas aeruginosa} PDB: 2ixi_A* 2ixh_A* 1rtv_A* 2ixj_A* Probab=100.00 E-value=0 Score=403.56 Aligned_cols=172 Identities=46% Similarity=0.825 Sum_probs=164.6 Q ss_pred CCCCCEEEEECCEEEECCCEEEEEECHHHHHHC-CCCCCEEEEEEEECCCCCEEEECCCCCCCCCHHHHEEECHHHHHHH Q ss_conf 965753997076220379504211088989867-9987413442331252000000015555544012100002222234 Q gi|254780919|r 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDI 79 (198) Q Consensus 1 L~I~gv~ii~~~~f~D~RG~f~e~f~~~~~~~~-~~~~~~~Q~n~S~s~~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dv 79 (198) |+|+||++++++.|.|+||+|.|+|+.+++.++ +.+..|+|+|+|.| +|||+||||||.+ .+|+|||+|++|+|+|| T Consensus 9 ~~I~gv~ii~~~~f~D~RG~f~e~f~~~~~~~~~~~~~~~~q~~~s~s-~kgvlRG~H~q~~-~~q~Klv~~i~G~i~dv 86 (184) T 2ixk_A 9 LAIPDVILFEPRVFGDDRGFFFESYNQRAFEEACGHPVSFVQDNHSRS-ARGVLRGLHYQIR-QAQGKLVRATLGEVFDV 86 (184) T ss_dssp CSSTTSEEEECCEEEETTEEEEEEEEHHHHHHHHSSCCCCCEEEEEEE-ETTBEEEEEEESS-SCCCEEEEEEESEEEEE T ss_pred CCCCCEEEEECCCEECCCEEEEEEEEHHHHHHHCCCCCCEEEEEEEEC-CCCCEEEEEECCC-CCCCEEEEEEEEEEEEE T ss_conf 779977999797126599729999600378985199976678999984-7894799985699-88428999986069999 Q ss_pred HHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCCHHCEECCCCCCCCCCCCCCCCCCC Q ss_conf 33406421333100113662365302333023220345307453389721787671017021688801177478887676 Q gi|254780919|r 80 AVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTIL 159 (198) Q Consensus 80 vvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~~~~~y~p~~e~~i~~~Dp~l~i~Wp~~~~~~ 159 (198) +||+|++|||||+|.+++|+++++++||||+||||||+||+|+|+++|++|++|+|++|.||+|+||.|+|+||+.++ T Consensus 87 ~vDlR~~S~T~g~~~~~~L~~~~~~~l~IP~G~aHGf~~L~d~t~v~Y~~s~~y~p~~e~~i~~~Dp~l~i~Wp~~~~-- 164 (184) T 2ixk_A 87 AVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSEYAEFLYKTTDFWAPEHERCIVWNDPELKIDWPLQDA-- 164 (184) T ss_dssp EEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEEESSCCCGGGEEEBCTTCTTTCCCCCCSSC-- T ss_pred EEECCCCCCCCCCEEEEEECCCCCCEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCEEECCCCCHHCCCCCCCCC-- T ss_conf 974789969888388789367777469828994689998279739999679864855544676898221888999997-- Q ss_pred CEECHHHHCCCCHHHCC Q ss_conf 30167884599877818 Q gi|254780919|r 160 PSVSEKDQNLPFLNQID 176 (198) Q Consensus 160 piiS~kD~~~p~l~d~~ 176 (198) ||||+||+++|+|+|++ T Consensus 165 ~iiS~kD~~~p~l~d~~ 181 (184) T 2ixk_A 165 PLLSEKDRQGKAFADAD 181 (184) T ss_dssp CBCCHHHHTCBCGGGSC T ss_pred CEECHHHCCCCCHHHCC T ss_conf 45468896998946555 No 5 >1dzr_A DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, 3, 5-hexulose epimerase; 2.17A {Salmonella typhimurium} SCOP: b.82.1.1 PDB: 1dzt_A* Probab=100.00 E-value=0 Score=401.82 Aligned_cols=173 Identities=48% Similarity=0.872 Sum_probs=165.6 Q ss_pred CCCCCEEEEECCEEEECCCEEEEEECHHHHHHC-CCCCCEEEEEEEECCCCCEEEECCCCCCCCCHHHHEEECHHHHHHH Q ss_conf 965753997076220379504211088989867-9987413442331252000000015555544012100002222234 Q gi|254780919|r 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDI 79 (198) Q Consensus 1 L~I~gv~ii~~~~f~D~RG~f~e~f~~~~~~~~-~~~~~~~Q~n~S~s~~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dv 79 (198) .+|+||++++++.|.|+||+|.|+|+.+++.+. +.++.|+|+|+|.| +|||+||||||.+|++|+|+|+|++|+|+|| T Consensus 7 t~I~Gv~ii~~~~f~D~RG~f~e~f~~~~~~~~~~~~~~~~q~~~S~s-~kgvlRG~H~q~~~~~q~Klv~~i~G~i~dv 85 (183) T 1dzr_A 7 TAIPDVLILEPKVFGDERGFFFESYNQQTFEELIGRKVTFVQDNHSKS-KKNVLRGLHFQRGENAQGKLVRCAVGEVFDV 85 (183) T ss_dssp CSSTTCEEEECCEEEETTEEEEEEEEHHHHHHHHSSCCCCCEEEEEEE-ETTBEEEEEEECGGGCCCEEEEEEESEEEEE T ss_pred CCCCCEEEEECCCEECCCCCEEEEEEHHHHHHHCCCCCCEEEEEEEEC-CCCEEEEEEECCCCCCCEEEEEEEEEEEEEE T ss_conf 559982999797157699278988604467885198852247899776-6983787887478887207989988069999 Q ss_pred HHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCCHHCEECCCCCCCCCCCCCCCCCCC Q ss_conf 33406421333100113662365302333023220345307453389721787671017021688801177478887676 Q gi|254780919|r 80 AVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTIL 159 (198) Q Consensus 80 vvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~~~~~y~p~~e~~i~~~Dp~l~i~Wp~~~~~~ 159 (198) +||+|++|||||++.+++|+++++++|+||+||||||+||+|+|+++|+++++|+|++|.||+|+||.|+|+||+.+ . T Consensus 86 ~vDlR~~S~T~gk~~~~~L~~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~~s~~y~p~~e~~i~~~D~~l~i~Wp~~~--~ 163 (183) T 1dzr_A 86 AVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSEYAEFLYKATNYYSPSSEGSILWNDEAIGIEWPFSQ--L 163 (183) T ss_dssp EEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEEESSCCCTTTEEECCTTCTTTTCCCCCSS--C T ss_pred EEECCCCCCCCCCEEEEECCCCCCEEEECCCCCEEEEEEECCCCEEEEECCCCCCCCCCEEECCCCCCCCCCCCCCC--C T ss_conf 99727898975617787617565407980899168999934886799966875484564355389943397899999--8 Q ss_pred CEECHHHHCCCCHHHCC Q ss_conf 30167884599877818 Q gi|254780919|r 160 PSVSEKDQNLPFLNQID 176 (198) Q Consensus 160 piiS~kD~~~p~l~d~~ 176 (198) ||||+||+++|.|+|+- T Consensus 164 ~ilS~kD~~~p~l~~~l 180 (183) T 1dzr_A 164 PELSAKDAAAPLLDQAL 180 (183) T ss_dssp CBCCHHHHTCCCGGGSC T ss_pred CEECHHHHCCCCHHHHH T ss_conf 47788893899978963 No 6 >1oi6_A PCZA361.16; epimerase, vancomycin group antibiotic, EVAD, isomerase; HET: TMP; 1.4A {Amycolatopsis orientalis} SCOP: b.82.1.1 PDB: 1ofn_A* 1wa4_A Probab=100.00 E-value=0 Score=400.66 Aligned_cols=178 Identities=28% Similarity=0.472 Sum_probs=167.8 Q ss_pred CCCCCEEEEECCEEEECCCEEEEEECHHHHHHC--CCCCCEEEEEEEECCCCCEEEECCCCCCCCCHHHHEEECHHHHHH Q ss_conf 965753997076220379504211088989867--998741344233125200000001555554401210000222223 Q gi|254780919|r 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL--GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFD 78 (198) Q Consensus 1 L~I~gv~ii~~~~f~D~RG~f~e~f~~~~~~~~--~~~~~~~Q~n~S~s~~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~d 78 (198) ++|+||++++++.|+|+||+|.|+|+.+++.+. +..+.++|+|+|.| +||||||||||.+|++|+|||+|++|+|++ T Consensus 6 ~~I~Gv~~i~~~~f~D~RG~f~e~f~~~~~~~~~~~~~~~~~q~~~S~s-~kgvlRGlH~q~~p~~q~Klv~ci~G~I~~ 84 (205) T 1oi6_A 6 LAVDGAIEFTPRVFADDRGLLILPYQEEAFVEAHGGPLFRVAQTIHSMS-KRGVVRGIHYTVTPPGTAKYVYCARGKAMD 84 (205) T ss_dssp CSSTTCEEEECCCEEETTEEEECSCBHHHHHHHHSSCCCCCCEEEEEEE-CTTBEEEEEEECTTTCCCEEEEEEESCEEE T ss_pred CCCCCEEEEECCEEECCCCCEEEEECHHHHHHHCCCCCCCEEEEEEEEC-CCCEEEEEEEECCCCCCEEEEEEEEEEEEE T ss_conf 5589669998931787992878764478999841898876006999883-598699996637878760787788618999 Q ss_pred HHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCCHHCEECCCCCCCCCCCCCCCCCC Q ss_conf 43340642133310011366236530233302322034530745338972178767101702168880117747888767 Q gi|254780919|r 79 IAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTI 158 (198) Q Consensus 79 vvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~~~~~y~p~~e~~i~~~Dp~l~i~Wp~~~~~ 158 (198) |+||+|++|||||+|..++|+++++++|+||+||||||++|+|+|+++|++|++|+|++|.+|+|+||.|+|+||+..+ T Consensus 85 v~vD~R~~SpTfg~~~~~~L~~~~~~~l~IP~G~aHGf~~L~d~t~v~Y~~s~~y~p~~e~~i~~~Dp~l~i~Wp~~~~- 163 (205) T 1oi6_A 85 IVIDIRVGSPTFGQWDSVLMDQQDPRAVYLPVGVGHAFVALEDDTVMSYMLSRSYVTQDELALSALDPALGLPIDIGVE- 163 (205) T ss_dssp EEECCCBTCTTTTCEEEEEECSSSCCEEEECTTCEEEEEECSTTEEEEEEESSCCCGGGEEECCTTCTTTCCSCCCSSC- T ss_pred EEHHCCCCCCCCCCEEEEEECCCCCCEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCEECCCCCCCCCCCCCCCC- T ss_conf 9811036899767157776137899789968997579986367656688628756802460676798656867799998- Q ss_pred CCEECHHHHCCCCHHHCCCCCEE Q ss_conf 63016788459987781855123 Q gi|254780919|r 159 LPSVSEKDQNLPFLNQIDSPFEY 181 (198) Q Consensus 159 ~piiS~kD~~~p~l~d~~~~f~~ 181 (198) ||||+||+++|+|+|+++...+ T Consensus 164 -~iiS~kD~~~p~l~e~~~~~~~ 185 (205) T 1oi6_A 164 -PIVSDRDRVAITLAEAQRQGLL 185 (205) T ss_dssp -CBCCHHHHTCCCHHHHHHTTCS T ss_pred -CEECHHHCCCCCHHHHHHCCCC T ss_conf -6888899289998999866999 No 7 >1wlt_A 176AA long hypothetical DTDP-4-dehydrorhamnose 3, 5-epimerase; jelly roll-like topology, flattened barrel, isomerase; 1.90A {Sulfolobus tokodaii} SCOP: b.82.1.1 PDB: 2b9u_A Probab=100.00 E-value=0 Score=381.45 Aligned_cols=166 Identities=35% Similarity=0.695 Sum_probs=158.2 Q ss_pred CCCCCEEEEECCEEEECCCEEEEEECHHHHHHCCCCCCEEEEEEEECCCCCEEEECCCCCCCCCHHHHEEECHHHHHHHH Q ss_conf 96575399707622037950421108898986799874134423312520000000155555440121000022222343 Q gi|254780919|r 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIA 80 (198) Q Consensus 1 L~I~gv~ii~~~~f~D~RG~f~e~f~~~~~~~~~~~~~~~Q~n~S~s~~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvv 80 (198) |.| ||++++|++|+|+||+|.|+|+.+++.+++.+ +|+|+|+|.| +||||||||||.+|++|+|+|+|++|+|++|+ T Consensus 28 l~~-Gv~ii~p~~f~D~RG~f~e~f~~~~~~~~~~~-~~~Q~n~S~S-~kgvlRGlH~q~~~~~q~Klv~~i~G~I~~v~ 104 (196) T 1wlt_A 28 LGM-GIILIKPKVFPDKRGFFLEVFKSEDFTKMRIP-NVIQTNMSFS-RKGVVRGLHYQRTPKEQGKIIFVPKGRILDVA 104 (196) T ss_dssp EET-TEEEEEECCEEETTEEEEEEEEHHHHHHTTCC-CEEEEEEEEE-CTTBEEEEEEECTTSCCEEEEEEEESEEEEEE T ss_pred CCC-EEEEEECCCEECCCEEEEEEECHHHHHHCCCC-CEEEEEEEEE-CCCEEEEEEECCCCCCCCEEEEEEEEEEEEEE T ss_conf 876-79999897127599709999647899873898-6588887160-58888887763334687668698623899999 Q ss_pred HHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCCHHCEECCCCCCCCCCCCCCCCCCCC Q ss_conf 34064213331001136623653023330232203453074533897217876710170216888011774788876763 Q gi|254780919|r 81 VDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILP 160 (198) Q Consensus 81 vDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~~~~~y~p~~e~~i~~~Dp~l~i~Wp~~~~~~p 160 (198) ||+|++|||||++..++|+++++++|+||+||||||+||+|+|+++|+++++|+|++|.+|+|+ +|+||+++ | T Consensus 105 vDlR~~S~Tfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~~~~~y~p~~e~~i~~~----~i~Wp~~~---~ 177 (196) T 1wlt_A 105 VDVRKSSPTFGKYVKAELNEENHYMLWIPPGFAHGFQALEDSIVIYFITHNEYSPPHERCISYS----YIDWPIKE---V 177 (196) T ss_dssp EECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEESSSEEEEEEEESSCCCGGGEEECCGG----GSCCSCSS---C T ss_pred EECCCCCCCCCCEEEEEECCCCCCEEEECCEEEEEEEEECCCCEEEEEECCCCCCHHCCEECCC----CCCCCCCC---C T ss_conf 9666799977826999841566756998881958999805565589983752181132457227----71799998---8 Q ss_pred EECHHHHCCCCHHHCC Q ss_conf 0167884599877818 Q gi|254780919|r 161 SVSEKDQNLPFLNQID 176 (198) Q Consensus 161 iiS~kD~~~p~l~d~~ 176 (198) |||+||+++|.|+|++ T Consensus 178 iiS~kD~~~~~l~~~~ 193 (196) T 1wlt_A 178 IISDKDLQCPSLEKAE 193 (196) T ss_dssp BCCHHHHTCCCTTTSC T ss_pred EECHHHCCCCCHHHCC T ss_conf 9798792999935524 No 8 >1nxm_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jelly roll-like structure, beta sheet, isomerase; 1.30A {Streptococcus suis} SCOP: b.82.1.1 PDB: 1nyw_A* 1nzc_A* 2ixl_A* Probab=100.00 E-value=0 Score=365.27 Aligned_cols=172 Identities=32% Similarity=0.583 Sum_probs=152.5 Q ss_pred CCCCEEEEECCEEEECCCEEEEEECHHHHHHCCCCCCE-----EEEEEEECCCCCEEEECCCCCCCCCHHHHEEEC-HHH Q ss_conf 65753997076220379504211088989867998741-----344233125200000001555554401210000-222 Q gi|254780919|r 2 NINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVF-----VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCI-AGR 75 (198) Q Consensus 2 ~I~gv~ii~~~~f~D~RG~f~e~f~~~~~~~~~~~~~~-----~Q~n~S~s~~kgvlRGlH~Q~~p~~Q~Klv~ci-~G~ 75 (198) +|+||++++++.|.|+||+|.|+|+.+++.+.+++..+ +|+|+|.| +|||||||||| +|+|+++|+ .|+ T Consensus 17 ~I~Gv~ii~~~~~~D~RG~F~e~f~~~~~~~~~~~~~~~~~~~~Q~n~S~S-~kgvlRGlH~q----~~~k~v~~~~~G~ 91 (197) T 1nxm_A 17 AIPGMLEFDIPVHGDNRGWFKENFQKEKMLPLGFPESFFAEGKLQNNVSFS-RKNVLRGLHAE----PWDKYISVADGGK 91 (197) T ss_dssp TSTTCEEEECCEEEETTEEEEEEEEHHHHTTTTCCGGGGTTCCCEEEEEEE-ETTBEEEEEEC----SSCEEEEECSSCC T ss_pred CCCCCEEEECCCEECCCCCEEEEECHHHHHHHCCCCCCCCCCEEEEEEEEC-CCCEEEEEEEC----CCCEEEEEEECCC T ss_conf 888758997973162990898861457898718973212022154248761-48889999607----7606899871471 Q ss_pred HHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCCHHC---EECCCCCCCCCCCC Q ss_conf 223433406421333100113662365302333023220345307453389721787671017---02168880117747 Q gi|254780919|r 76 IFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHD---SGVAWQDKSIDITW 152 (198) Q Consensus 76 I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~~~~~y~p~~e---~~i~~~Dp~l~i~W 152 (198) |++|+||+|+ |||||+|..++|++ +++||||+||||||+||+|+|+++|++|++|+|+.+ .||+|+||.|+|+| T Consensus 92 i~dvvvD~R~-S~t~gk~~~~~l~~--~~~l~IP~G~aHGf~~L~d~~~i~Y~~s~~y~~~~~~~~~~i~~~Dp~l~i~W 168 (197) T 1nxm_A 92 VLGTWVDLRE-GETFGNTYQTVIDA--SKSIFVPRGVANGFQVLSDFVAYSYLVNDYWALELKPKYAFVNYADPSLDIKW 168 (197) T ss_dssp EEEEEEECBS-STTTTCEEEEEECT--TEEEEECTTEEEEEEECSSEEEEEEEESSCCCGGGGGGCEECCTTCTTSSCCC T ss_pred EEEEEEEECC-CCCCCCEEEEEECC--CCEEEECCCCCEEEEECCCCEEEEEEECCCCCCCCCCCCEEECCCCCCCCCCC T ss_conf 4889998516-65456266788326--84589369860688862500177788367748333687235728994238899 Q ss_pred CCCCCCCCEECHHHHCCCCHHHCCCCCEECCC Q ss_conf 88876763016788459987781855123566 Q gi|254780919|r 153 PLLDTILPSVSEKDQNLPFLNQIDSPFEYDGL 184 (198) Q Consensus 153 p~~~~~~piiS~kD~~~p~l~d~~~~f~~~~~ 184 (198) |..+ .||||+||+++|+|+|++ ++.++.| T Consensus 169 p~~~--~~ilS~kD~~~p~l~d~~-~~~~~~~ 197 (197) T 1nxm_A 169 ENLE--EAEVSEADENHPFLKDVK-PLRKEDL 197 (197) T ss_dssp SCST--TCBCCHHHHTSCCGGGCC-CBCGGGC T ss_pred CCCC--CCEECHHHCCCCCHHHCC-CCCCCCC T ss_conf 9999--788878893899968875-7674669 No 9 >3ejk_A DTDP sugar isomerase; YP_390184.1, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.95A {Desulfovibrio desulfuricans subsp} Probab=100.00 E-value=1.4e-45 Score=280.74 Aligned_cols=148 Identities=15% Similarity=0.084 Sum_probs=134.9 Q ss_pred CCCCCEEEEECCEEEECCCEEEEEECHHHHHHCCCCCCEEEEEEEECCCCCEEEECCCCCCCCCHHHHEEECHHHHHHHH Q ss_conf 96575399707622037950421108898986799874134423312520000000155555440121000022222343 Q gi|254780919|r 1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIA 80 (198) Q Consensus 1 L~I~gv~ii~~~~f~D~RG~f~e~f~~~~~~~~~~~~~~~Q~n~S~s~~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvv 80 (198) |+|+||++++++.|.|+||+|.|.|+.++.. ...|.|+|+|.+ ++||+||||+|.. |+|+++|++|++.+|+ T Consensus 18 l~I~Gv~i~~l~~~~D~RG~f~e~~r~~~~~----~~~f~q~y~S~s-k~g~iRG~H~h~~---~~~~~~vi~G~v~~v~ 89 (174) T 3ejk_A 18 LPVEGAQLSELRQIPAEGGPVLHMLRLDSPQ----FSQFGEIYFSEV-LPRRVKAWKRHSL---MTQLFAVPVGCIHVVL 89 (174) T ss_dssp CSSTTCEEEECCEECCTTSCEECCCCTTCTT----CCCCCEEEEEEE-CBTCEEEEEEESS---CCEEEEEEESEEEEEE T ss_pred EECCCEEEECCCEEECCCCCEEEEEECCCCC----CCCCCEEEEEEE-ECCCCCCEECCCC---CCEEEEEECCEEEEEE T ss_conf 6449869963865885995389865605333----267898999997-2896021185798---8779999715399999 Q ss_pred HHCCCCHHHHHHEEEEEEECC-CCCEEEECCCCCEEEEEECCC-CEEEEEECCCCCCHHCEECCCCCCCCCCCCCCCC Q ss_conf 340642133310011366236-530233302322034530745-3389721787671017021688801177478887 Q gi|254780919|r 81 VDIRRNSPTYGCWVSLEISAN-NGLQIYIPTGFAHGFMTLEMN-TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLD 156 (198) Q Consensus 81 vDlR~~SpTfgk~~~~~Ls~~-~~~~l~IP~G~aHGf~~L~d~-~~i~Y~~~~~y~p~~e~~i~~~Dp~l~i~Wp~~~ 156 (198) +|+|++|||||++..++|+++ ++.+|+||+|+||||++|+++ ++++|+++..|+|+++.+++|+||.|+++||..+ T Consensus 90 ~D~r~~S~t~~k~~~~~Ls~~~n~~~l~IPpG~~hgf~~l~~~~siv~~~~~~~y~p~e~~~i~~dd~~i~~~W~~~d 167 (174) T 3ejk_A 90 YDGREKSPTSGRLAQVTLGRPDNYRLLRIPPQVWYGFAATGDTPALVANCTDIPHRQGESERAPQDAPFIPFSWAGAD 167 (174) T ss_dssp ECCCTTCTTTTCEEEEEEETTTBCEEEEECTTCEEEEEECTTSCEEEEEEESSCCCTTSEEECCTTCTTSCCCGGGCC T ss_pred EECCCCCCCCEEEEEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 942248853026999997157740479837981899998479836999976877484555461699987689889765 No 10 >2pa7_A DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysugar biosynthesis, S-layer biosynthesis, ketoisomerase; HET: TYD; 1.50A {Aneurinibacillus thermoaerophilus} SCOP: b.82.1.1 PDB: 2pae_A* 2pak_A* 2pam_A* Probab=99.90 E-value=1.6e-24 Score=160.35 Aligned_cols=119 Identities=15% Similarity=0.226 Sum_probs=100.4 Q ss_pred CEEEEECCEEEECCCEEEEEECHHHHHHCCCCCCEEEEEEEECCCCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCC Q ss_conf 53997076220379504211088989867998741344233125200000001555554401210000222223433406 Q gi|254780919|r 5 PVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIR 84 (198) Q Consensus 5 gv~ii~~~~f~D~RG~f~e~f~~~~~~~~~~~~~~~Q~n~S~s~~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR 84 (198) ..++++.+.|.|+||+|..++..+. .++.+.++.++.+.++|++||+|+|.. |+++++|++|++.+++.|.+ T Consensus 4 ~~Kii~~~~~~D~RG~l~~~~~~k~-----i~f~ikrv~~i~~~~~~~iRG~H~Hk~---~~q~~~~i~G~i~~~~~d~~ 75 (141) T 2pa7_A 4 ENKVINFKKIIDSRGSLVAIEENKN-----IPFSIKRVYYIFDTKGEEPRGFHAHKK---LEQVLVCLNGSCRVILDDGN 75 (141) T ss_dssp CCSEEECCEEEETTEEEEEEETTTT-----SSSCCCEEEEEESCCSSCCEEEEEESS---CCEEEEEEESCEEEEEECSS T ss_pred CCEEECCCCEECCCCCEEEEECCCC-----CCCCCCEEEEEECCCCCCEEECCCCCC---CEEEEEECCCEEEEEEECCC T ss_conf 5579638950989986999854766-----998768899998389985050223643---20778964879999997564 Q ss_pred CCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCCHHCE Q ss_conf 4213331001136623653023330232203453074533897217876710170 Q gi|254780919|r 85 RNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDS 139 (198) Q Consensus 85 ~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~~~~~y~p~~e~ 139 (198) +.+ .+.|+ ++..+|+||||+||||++|+++|+++|++|..|+|+++. T Consensus 76 ~~~-------~~~l~-~~~~~l~IPpg~w~~~~~ls~~s~ll~~~s~~y~~~dYi 122 (141) T 2pa7_A 76 IIQ-------EITLD-SPAVGLYVGPAVWHEMHDFSSDCVMMVLASDYYDETDYI 122 (141) T ss_dssp CEE-------EEEEC-CTTEEEEECTTCEEEEECCCTTCEEEEEESSCCCGGGEE T ss_pred CCE-------EEEEE-CCCCEEEECCCEEEEEEECCCCCEEEEECCCCCCHHHEE T ss_conf 313-------69854-132233737976032444599979999928888945400 No 11 >2zkl_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, isomerase; 2.61A {Staphylococcus aureus} Probab=99.79 E-value=1.1e-19 Score=132.39 Aligned_cols=112 Identities=16% Similarity=0.205 Sum_probs=96.2 Q ss_pred EEECCEEEECCCEEEEEECHHHHHHCCCCCCEEEEEEEECCCCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCH Q ss_conf 97076220379504211088989867998741344233125200000001555554401210000222223433406421 Q gi|254780919|r 8 ILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNS 87 (198) Q Consensus 8 ii~~~~f~D~RG~f~e~f~~~~~~~~~~~~~~~Q~n~S~s~~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~S 87 (198) ...++.+.|+||.|.|++..+ ...|.++|.+ ++|++||+|||.. |...+.|++|++..++.|+|.+ T Consensus 249 ~~~l~~~~d~rg~~~e~~k~~---------~~~~~~~~~~-~pg~~rg~H~H~~---~~e~~~v~~G~~~~~~~~~~~~- 314 (369) T 2zkl_A 249 SYPLLMNVDDRGSFTEFIKTP---------DRGQVSVNIS-KPGITKGNHWHHT---KNEKFLVVSGKGVIRFRHVNDD- 314 (369) T ss_dssp CCCCCEEECSSEEEEEEEECS---------SSCEEEEEEE-CTTCEEEEEECSS---CCEEEEEEESEEEEEEEETTCC- T ss_pred CCCCEEEECCHHHHHEEEECC---------CCCCEEEEEE-CCCCEECEEECCC---CCEEEEEECCEEEEEEEECCCC- T ss_conf 645314457244101010135---------4773699997-6884621054056---6149999904799999928999- Q ss_pred HHHHHEEEEEEECCCCCEEEECCCCCEEEEEEC-CCCEEEEEECCCCCCHH Q ss_conf 333100113662365302333023220345307-45338972178767101 Q gi|254780919|r 88 PTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE-MNTEVIYKVTDFYSVEH 137 (198) Q Consensus 88 pTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~-d~~~i~Y~~~~~y~p~~ 137 (198) +...+.|+++++..+.||||+|||+..++ +++++++.++..|+|+. T Consensus 315 ----~~~~~~~~~~~~~~v~ip~g~~H~~~n~g~~~~~~~~~~~~~~~~~~ 361 (369) T 2zkl_A 315 ----EIIEYYVSGDKLEVVDIPVGYTHNIENLGDTDMVTIMWVNEMFDPNQ 361 (369) T ss_dssp ----CCEEEEEETTBCCEEEECTTEEEEEEECSSSCEEEEEEESSCCCSSS T ss_pred ----CEEEEEECCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCC T ss_conf ----58999938997389990899669869868887599997575679789 No 12 >1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal binding protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A Probab=97.32 E-value=0.00015 Score=45.37 Aligned_cols=98 Identities=23% Similarity=0.345 Sum_probs=68.4 Q ss_pred ECCCEEEEEECHHHHHHCCCCCCEEEEEEEECCCCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEE Q ss_conf 37950421108898986799874134423312520000000155555440121000022222343340642133310011 Q gi|254780919|r 16 DSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVS 95 (198) Q Consensus 16 D~RG~f~e~f~~~~~~~~~~~~~~~Q~n~S~s~~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~ 95 (198) .+.|+-.+. ....|... ..+.-.+..+ .+|.+|-+|++. ++.+.+|++|+...-+||- -|+.+. T Consensus 60 ~~gg~~r~~-~~~~~p~~---~~~a~~~~~L--~pGa~~~pHwH~----~aE~~yVl~G~~~vt~Vd~------~Gr~~~ 123 (385) T 1j58_A 60 EKGGYAREV-TVRELPIS---ENLASVNMRL--KPGAIRELHWHK----EAEWAYMIYGSARVTIVDE------KGRSFI 123 (385) T ss_dssp ETTEEEEEE-CTTTCTTC---SSCEEEEEEE--CTTCEEEEEEES----SCEEEEEEEEEEEEEEECT------TSCEEE T ss_pred CCCCEEEEE-EHHHCCCC---CCCEEEEEEE--CCCCCCCCCCCC----HHHEEEEEEEEEEEEEECC------CCCEEE T ss_conf 679706995-05558351---2312069996--799686772466----3638999953799999917------994899 Q ss_pred EEEECCCCCEEEECCCCCEEEEEECCCCEEEEEECC Q ss_conf 366236530233302322034530745338972178 Q gi|254780919|r 96 LEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTD 131 (198) Q Consensus 96 ~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~~~~ 131 (198) ..|.+ +..+++|+|++|..+.+++.+.++-..++ T Consensus 124 ~~l~~--GDv~~~P~G~~H~i~n~~dg~e~llvf~~ 157 (385) T 1j58_A 124 DDVGE--GDLWYFPSGLPHSIQALEEGAEFLLVFDD 157 (385) T ss_dssp EEEET--TEEEEECTTCCEEEEEEEEEEEEEEEESC T ss_pred EEECC--CCEEEECCCCEEEEEECCCCCEEEEEECC T ss_conf 87247--87899889977999836999689999668 No 13 >2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP} Probab=96.66 E-value=0.004 Score=37.22 Aligned_cols=100 Identities=16% Similarity=0.188 Sum_probs=64.0 Q ss_pred EEECCCEEEEEECHHHHHHCCCCCCEEEEEEEECCCCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHE Q ss_conf 20379504211088989867998741344233125200000001555554401210000222223433406421333100 Q gi|254780919|r 14 FEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCW 93 (198) Q Consensus 14 f~D~RG~f~e~f~~~~~~~~~~~~~~~Q~n~S~s~~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~ 93 (198) ..++.|+ .+.-....|... ..+.-.+..+ ++|-+|-+|+|.. .+.+.+|++|+...-+||- -|+. T Consensus 31 ~~~~gg~-~~~~~~~~~p~~---~~~~~~~~~l--~pg~~~~~H~H~~---a~E~~~Vl~G~~~v~~v~~------~g~~ 95 (361) T 2vqa_A 31 VLYDGGT-TKQVGTYNFPVS---KGMAGVYMSL--EPGAIRELHWHAN---AAEWAYVMEGRTRITLTSP------EGKV 95 (361) T ss_dssp EEETTEE-EEEESTTTCTTC---CSCEEEEEEE--CTTCEEEEEECTT---CCEEEEEEESEEEEEEECT------TSCE T ss_pred CCCCCCE-EEEECHHHCCCC---CCCEEEEEEE--CCCCCCCCEECCC---CCEEEEEEEEEEEEEEECC------CCCE T ss_conf 1157955-899535558565---5621589997--6997368726899---7859999956899999948------9967 Q ss_pred EEEEEECCCCCEEEECCCCCEEEEEECCC-CEEEEEEC Q ss_conf 11366236530233302322034530745-33897217 Q gi|254780919|r 94 VSLEISANNGLQIYIPTGFAHGFMTLEMN-TEVIYKVT 130 (198) Q Consensus 94 ~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~-~~i~Y~~~ 130 (198) ....|.+ +..++||+|.+|..+.+.++ +.++...+ T Consensus 96 ~~~~l~~--GDv~~~P~G~~H~~~N~g~~~~~~l~vfd 131 (361) T 2vqa_A 96 EIADVDK--GGLWYFPRGWGHSIEGIGPDTAKFLLVFN 131 (361) T ss_dssp EEEEEET--TEEEEECTTCEEEEEECSSSCEEEEEEES T ss_pred EEEEECC--CCEEEECCCCEEEEEECCCCCEEEEEEEC T ss_conf 9999626--85899789976999917999679999967 No 14 >1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A Probab=96.32 E-value=0.011 Score=34.74 Aligned_cols=98 Identities=16% Similarity=0.131 Sum_probs=63.5 Q ss_pred CEEEEEECHHHHHHC-CCCCCEEEEEEEECCCCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEE Q ss_conf 504211088989867-9987413442331252000000015555544012100002222234334064213331001136 Q gi|254780919|r 19 GWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLE 97 (198) Q Consensus 19 G~f~e~f~~~~~~~~-~~~~~~~Q~n~S~s~~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~ 97 (198) |.+. .-+...|..+ .+.....-.+ -++|-++..|++..- +++++|++|+...-+|+..-. +.+... T Consensus 320 G~~~-~~~~~~~P~L~~l~ls~~~v~----L~pgam~~PHwh~~A---~ei~yV~~G~g~v~vV~~~G~-----~~~~~~ 386 (476) T 1fxz_A 320 GSVT-TATSLDFPALSWLRLSAEFGS----LRKNAMFVPHYNLNA---NSIIYALNGRALIQVVNCNGE-----RVFDGE 386 (476) T ss_dssp EEEE-EECTTTSGGGTTTTCCEEEEE----ECTTCEEEEEEETTC---CEEEEEEESEEEEEEECTTSC-----EEEEEE T ss_pred EEEE-EECHHHCCCCCCCCCCEEEEE----ECCCCEECCCCCCCC---CEEEEEEEEEEEEEEECCCCC-----EEEEEE T ss_conf 0699-857121845001243338999----768976077117998---889999954588999848996-----788527 Q ss_pred EECCCCCEEEECCCCCEEEEEECCCCEEEEEECC Q ss_conf 6236530233302322034530745338972178 Q gi|254780919|r 98 ISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTD 131 (198) Q Consensus 98 Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~~~~ 131 (198) |.+ +.+++||.|++|--.+..++..++-+.++ T Consensus 387 l~~--Gdv~vvP~g~~~~~~a~~e~~~~v~f~t~ 418 (476) T 1fxz_A 387 LQE--GRVLIVPQNFVVAARSQSDNFEYVSFKTN 418 (476) T ss_dssp EET--TCEEEECTTCEEEEEECSTTEEEEEEESS T ss_pred ECC--CCEEEECCCCEEEEECCCCCEEEEEEECC T ss_conf 658--72899999988999818998699999767 No 15 >2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A Probab=95.71 E-value=0.0081 Score=35.48 Aligned_cols=75 Identities=19% Similarity=0.058 Sum_probs=52.5 Q ss_pred CCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHC-------CCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECC Q ss_conf 20000000155555440121000022222343340-------64213331001136623653023330232203453074 Q gi|254780919|r 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDI-------RRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEM 121 (198) Q Consensus 49 ~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDl-------R~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d 121 (198) .+|..+..|+|. .++-.++|++|++....-|= |..+.--++.....+..+.+..+|+|+|++|||.--+| T Consensus 51 pPG~g~ppH~H~---~~dE~fyVLeG~l~~~~gde~~p~~~~~~~t~~~~~~~~~tv~a~PGdvi~vP~G~~H~F~N~gd 127 (239) T 2xlg_A 51 PPGGGPMPHIHY---FINEWFWTPEGGIELFHSTKQYPNMDELPVVGGAGRGDLYSIQSEPKQLIYSPNHYMHGFVNPTD 127 (239) T ss_dssp CTTCSCCSEEES---SEEEEEEETTCCCEEEEEEEECCCTTSCCSTTTTCCEEEEEEECCTTEEEEECTTEEEEEECCSS T ss_pred CCCCCCCCCCCC---CCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEECCCCCEEEECCCC T ss_conf 999889886378---86238999845899971654566533443222456665116863998689958996055681899 Q ss_pred CCEEE Q ss_conf 53389 Q gi|254780919|r 122 NTEVI 126 (198) Q Consensus 122 ~~~i~ 126 (198) .+.=+ T Consensus 128 et~~l 132 (239) T 2xlg_A 128 KTLPI 132 (239) T ss_dssp SCEEE T ss_pred CEEEE T ss_conf 73779 No 16 >3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus} Probab=95.60 E-value=0.011 Score=34.60 Aligned_cols=75 Identities=13% Similarity=0.061 Sum_probs=55.5 Q ss_pred CCCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEE Q ss_conf 52000000015555544012100002222234334064213331001136623653023330232203453074533897 Q gi|254780919|r 48 FDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127 (198) Q Consensus 48 ~~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y 127 (198) .++|-++..|++..- +++++|++|+...-+|+..-. +.....|.+ +.+++||.|++|.-.+-+++..++. T Consensus 330 L~~gam~~PHwh~~A---~ei~yV~~G~grvqvv~~~G~-----~~~~~~l~~--G~v~vvP~g~~~~~~a~~~~le~v~ 399 (466) T 3kgl_A 330 IRQNAMVLPQWNANA---NAVLYVTDGEAHVQVVNDNGD-----RVFDGQVSQ--GQLLSIPQGFSVVKRATSEQFRWIE 399 (466) T ss_dssp EETTEEEEEEEESSC---CEEEEEEESEEEEEEECTTSC-----EEEEEEEET--TCEEEECTTCEEEEEECSSEEEEEE T ss_pred ECCCCEECCEECCCC---CEEEEEEECEEEEEEEECCCC-----EEEEEEECC--CEEEEECCCCEEEEECCCCCEEEEE T ss_conf 738978425087888---889999935589999928996-----887448748--7199988997799971899859999 Q ss_pred EECCC Q ss_conf 21787 Q gi|254780919|r 128 KVTDF 132 (198) Q Consensus 128 ~~~~~ 132 (198) +.++. T Consensus 400 f~tn~ 404 (466) T 3kgl_A 400 FKTNA 404 (466) T ss_dssp EESSS T ss_pred EECCC T ss_conf 97479 No 17 >2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant protein; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A Probab=95.54 E-value=0.01 Score=34.84 Aligned_cols=73 Identities=16% Similarity=0.112 Sum_probs=52.4 Q ss_pred CCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEEE Q ss_conf 20000000155555440121000022222343340642133310011366236530233302322034530745338972 Q gi|254780919|r 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYK 128 (198) Q Consensus 49 ~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~ 128 (198) ++|-++..|++.. -+++++|++|+...-+|+..-. +.+...|.+ +..++||.|++|.-.+-.++..++.+ T Consensus 375 ~~gam~~PHwn~~---A~ei~yV~~G~g~vqvV~~~G~-----~~~~~~l~~--Gdv~VvPqg~~~~~~a~~e~~~~v~f 444 (493) T 2d5f_A 375 YRNGIYSPHWNLN---ANSVIYVTRGKGRVRVVNAQGN-----AVFDGELRR--GQLLVVPQNFVVAEQGGEQGLEYVVF 444 (493) T ss_dssp CTTCEEEEEEESS---CCEEEEEEEEEEEEEEECTTSC-----EEEEEEEET--TCEEEECTTCEEEEEEEEEEEEEEEE T ss_pred CCCCEECCEECCC---CCEEEEEEEEEEEEEEEECCCC-----EEEEEEECC--CCEEEECCCCEEEEECCCCCEEEEEE T ss_conf 4797407706788---8789999941389999907997-----777528748--86899999987999728997799999 Q ss_pred ECC Q ss_conf 178 Q gi|254780919|r 129 VTD 131 (198) Q Consensus 129 ~~~ 131 (198) .++ T Consensus 445 ~tn 447 (493) T 2d5f_A 445 KTH 447 (493) T ss_dssp ESS T ss_pred ECC T ss_conf 888 No 18 >3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea} Probab=95.40 E-value=0.014 Score=34.07 Aligned_cols=74 Identities=20% Similarity=0.179 Sum_probs=55.4 Q ss_pred CCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEEE Q ss_conf 20000000155555440121000022222343340642133310011366236530233302322034530745338972 Q gi|254780919|r 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYK 128 (198) Q Consensus 49 ~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~ 128 (198) .+|-++..|++..- .++++|++|+...-+|+..-. +.+...|.+ +.+++||.|++|.-.+-.++..++.+ T Consensus 380 ~~gam~~PHwn~~A---~ei~yV~~G~g~vqvV~~~G~-----~~~~~~l~~--Gdv~VvPqg~~~~~~a~~e~~e~v~f 449 (510) T 3c3v_A 380 YRNALFVPHYNTNA---HSIIYALRGRAHVQVVDSNGN-----RVYDEELQE--GHVLVVPQNFAVAGKSQSDNFEYVAF 449 (510) T ss_dssp ETTCEEEEEEESSC---CEEEEEEESEEEEEEECTTSC-----EEEEEEEET--TCEEEECTTCEEEEEECSSEEEEEEE T ss_pred CCCCCCCCCCCCCC---CEEEEEEEEEEEEEEEECCCC-----EEEEEEECC--CCEEEECCCCEEEEEECCCCEEEEEE T ss_conf 58967166036888---889999942389999958997-----788628638--87899999987999807998599999 Q ss_pred ECCC Q ss_conf 1787 Q gi|254780919|r 129 VTDF 132 (198) Q Consensus 129 ~~~~ 132 (198) .++. T Consensus 450 ~t~~ 453 (510) T 3c3v_A 450 KTDS 453 (510) T ss_dssp ESSS T ss_pred ECCC T ss_conf 8669 No 19 >1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal binding protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A Probab=95.38 E-value=0.013 Score=34.27 Aligned_cols=66 Identities=18% Similarity=0.235 Sum_probs=50.1 Q ss_pred CCCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCE Q ss_conf 52000000015555544012100002222234334064213331001136623653023330232203453074533 Q gi|254780919|r 48 FDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124 (198) Q Consensus 48 ~~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~ 124 (198) ..+|-+|.+|++-. .+.+++|++|+....+++-. |+..++.|.+ +..++||+|+.|.....+++.. T Consensus 264 l~PG~~~~pH~Hp~---a~E~~yvl~G~~~~~v~~~~------g~~~t~~l~~--GDv~~vP~g~~H~~~N~g~e~~ 329 (385) T 1j58_A 264 VEPGAMRELHWHPN---THEWQYYISGKARMTVFASD------GHARTFNYQA--GDVGYVPFAMGHYVENIGDEPL 329 (385) T ss_dssp ECTTCEEEEEECSS---SCEEEEEEESEEEEEEEEET------TEEEEEEEES--SCEEEECTTCBEEEEECSSSCE T ss_pred ECCCCCCCCCCCCC---CCEEEEEEECEEEEEEEECC------CCEEEEEECC--CCEEEECCCCEEEEEECCCCCE T ss_conf 65886258961799---88999999752899999279------9378998359--8189989997389896799988 No 20 >3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum} Probab=95.28 E-value=0.016 Score=33.70 Aligned_cols=74 Identities=16% Similarity=0.154 Sum_probs=55.3 Q ss_pred CCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEEE Q ss_conf 20000000155555440121000022222343340642133310011366236530233302322034530745338972 Q gi|254780919|r 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYK 128 (198) Q Consensus 49 ~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~ 128 (198) ++|-++..|++..- +++++|++|+...=+|+..-. +.+...|.+ +..++||.|++|.-.+-.++..++.+ T Consensus 366 ~~gam~~PHwn~~A---~ei~yV~~G~g~vqvv~~~G~-----~~~~~~l~~--Gdv~vvPqg~~~~~~a~~e~~e~v~f 435 (496) T 3ksc_A 366 HKNAMFVPHYNLNA---NSIIYALKGRARLQVVNCNGN-----TVFDGELEA--GRALTVPQNYAVAAKSLSDRFSYVAF 435 (496) T ss_dssp ETTCEEEEEEESSC---CEEEEEEESEEEEEEECTTSC-----EEEEEEEET--TCEEEECTTCEEEEEECSSEEEEEEE T ss_pred CCCCCCCCCCCCCC---CEEEEEEEEEEEEEEECCCCC-----EEEEEEECC--CCEEEECCCCEEEEEECCCCEEEEEE T ss_conf 47864277217888---899999833689999848997-----787408648--84899999988999808998699999 Q ss_pred ECCC Q ss_conf 1787 Q gi|254780919|r 129 VTDF 132 (198) Q Consensus 129 ~~~~ 132 (198) .++. T Consensus 436 ~t~~ 439 (496) T 3ksc_A 436 KTND 439 (496) T ss_dssp ESST T ss_pred ECCC T ss_conf 8669 No 21 >3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824} Probab=95.25 E-value=0.044 Score=31.27 Aligned_cols=112 Identities=13% Similarity=0.068 Sum_probs=65.7 Q ss_pred EECCEEEECCCEEEEEECHHHHHHCCCCCCEEEEEEEECCCCCEEEE---CCCCCCCCCHHHHEEECHHHHHHHHHHCCC Q ss_conf 70762203795042110889898679987413442331252000000---015555544012100002222234334064 Q gi|254780919|r 9 LKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRG---LHFQRPPYAQAKLVRCIAGRIFDIAVDIRR 85 (198) Q Consensus 9 i~~~~f~D~RG~f~e~f~~~~~~~~~~~~~~~Q~n~S~s~~kgvlRG---lH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~ 85 (198) .+|..++..+..|..+|..+. ...++.++ .. ..-+-| ||++... +-.++|++|++..++-+... T Consensus 4 ~~~~~~~~~~~g~~~l~~~e~-------~~Vk~l~~--~p-~~~ls~~~~lQ~H~~r---dE~w~Vl~G~~~v~~~~~~~ 70 (140) T 3d0j_A 4 MKPDIYENNREGILCVYKNEK-------WLVCIKNW--KP-DNDIEGIAHLEIHHST---DEQFILSAGKAILITAEKEN 70 (140) T ss_dssp CCCCCCCCCSSSEEEEEECSS-------EEEEEEEC--CG-GGBTTTCCEEEEESSC---CEEEEEEESCEEEEEEEEET T ss_pred CCCCEEECCCCCEEEEEECCC-------EEEEEEEE--CC-CCCCCCCCCCEECCCC---CCEEEEEECEEEEEEECCCC T ss_conf 675228827971899994995-------89999998--88-9977888352357883---67999995959999804676 Q ss_pred CHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCCHHC Q ss_conf 21333100113662365302333023220345307453389721787671017 Q gi|254780919|r 86 NSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHD 138 (198) Q Consensus 86 ~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~~~~~y~p~~e 138 (198) +-.......|.+ +.++.||+|.+|-..+.++..+++--.++.+..+.+ T Consensus 71 ---~~~~~~~~~l~~--Gd~~~IP~G~~Hr~~~~~d~~lliIE~s~t~~~d~d 118 (140) T 3d0j_A 71 ---DKFNIELTLMEK--GKVYNVPAECWFYSITQKDTKMMYVQDSNCSMDNSD 118 (140) T ss_dssp ---TEEEEEEEECCT--TCCEEECTTCEEEEEECTTCEEEEEEESCCCGGGEE T ss_pred ---CCCCCCEEEECC--CCEEECCCCCEEECCCCCCCEEEEEEECCCCCCCCC T ss_conf ---445650898359--967985699857433899973999992697149985 No 22 >3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A Probab=95.04 E-value=0.018 Score=33.49 Aligned_cols=74 Identities=15% Similarity=0.066 Sum_probs=54.5 Q ss_pred CCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEEE Q ss_conf 20000000155555440121000022222343340642133310011366236530233302322034530745338972 Q gi|254780919|r 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYK 128 (198) Q Consensus 49 ~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~ 128 (198) .+|-++..|++..- +++++|++|+...-+|+..-. +.+..+|.+ +.+++||.|++|.-.+-.+...++.+ T Consensus 402 ~pgam~~PHwnpnA---~ei~yV~~G~grvqvV~~~G~-----~v~~~~l~~--GdvfVVPqg~~~~~~A~~eg~e~v~f 471 (531) T 3fz3_A 402 YRNGIYSPHWNVNA---HSVVYVIRGNARVQVVNENGD-----AILDQEVQQ--GQLFIVPQNHGVIQQAGNQGFEYFAF 471 (531) T ss_dssp CTTCEEEEEEESSC---CEEEEEEEEEEEEEEECTTSC-----EEEEEEEET--TCEEEECTTCEEEEEEEEEEEEEEEE T ss_pred CCCCEECCCCCCCC---CEEEEEEECEEEEEEEECCCC-----EEEEEEECC--CCEEEECCCCEEEEECCCCCEEEEEE T ss_conf 48975156037999---889999948289999917987-----664208618--85899999987999728997599999 Q ss_pred ECCC Q ss_conf 1787 Q gi|254780919|r 129 VTDF 132 (198) Q Consensus 129 ~~~~ 132 (198) .++. T Consensus 472 ~tn~ 475 (531) T 3fz3_A 472 KTEE 475 (531) T ss_dssp ESST T ss_pred ECCC T ss_conf 6579 No 23 >2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP} Probab=94.99 E-value=0.025 Score=32.66 Aligned_cols=67 Identities=16% Similarity=0.257 Sum_probs=50.1 Q ss_pred CCCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEE Q ss_conf 520000000155555440121000022222343340642133310011366236530233302322034530745338 Q gi|254780919|r 48 FDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125 (198) Q Consensus 48 ~~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i 125 (198) ..+|-++.+|++.. .+.+++|++|+...-+++-. |+..++.|.+ +..++||+|+.|......+.... T Consensus 241 l~pG~~~~pH~Hp~---a~Ei~yv~~G~~~~~v~~~~------g~~~t~~l~~--Gdv~~vP~g~~H~~~N~g~e~~~ 307 (361) T 2vqa_A 241 LEPGAMRQLHWHPN---ADEWQYVLDGEMDLTVFASE------GKASVSRLQQ--GDVGYVPKGYGHAIRNSSQKPLD 307 (361) T ss_dssp ECTTCEEEEEECSS---CCEEEEEEESCEEEEEECST------TCEEEEEECT--TCEEEECTTCEEEEECCSSSCEE T ss_pred ECCCCCCCCCCCCC---CCEEEEEEECEEEEEEEECC------CCEEEEEECC--CCEEEECCCCEEEEEECCCCCEE T ss_conf 77997268843899---88999999375999999068------8169998259--86899899986998978999889 No 24 >2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A Probab=94.96 E-value=0.02 Score=33.27 Aligned_cols=74 Identities=16% Similarity=0.101 Sum_probs=52.7 Q ss_pred CCCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEE Q ss_conf 52000000015555544012100002222234334064213331001136623653023330232203453074533897 Q gi|254780919|r 48 FDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127 (198) Q Consensus 48 ~~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y 127 (198) .++|-++..|++..- +++++|++|+...=+|+..-. +.+...|.+ +.+++||.|++|--.+-.++..++- T Consensus 329 L~~gam~~PHwn~~A---~ei~yV~~G~g~vqvV~~~G~-----~~~~~~l~~--G~v~VvPqg~~~~~~a~~~~~e~v~ 398 (459) T 2e9q_A 329 LYSNAMVAPHYTVNS---HSVMYATRGNARVQVVDNFGQ-----SVFDGEVRE--GQVLMIPQNFVVIKRASDRGFEWIA 398 (459) T ss_dssp ECTTCEEEEEEESSC---CEEEEEEEEEEEEEEECTTSC-----EEEEEEEET--TCEEEECTTCEEEEEEEEEEEEEEE T ss_pred ECCCCCCCCCCCCCC---CEEEEEEEEEEEEEEECCCCC-----EEEEEEECC--CEEEEECCCCEEEEECCCCCEEEEE T ss_conf 458965477317888---889999952799999858997-----788308748--7399999998799981798759999 Q ss_pred EECC Q ss_conf 2178 Q gi|254780919|r 128 KVTD 131 (198) Q Consensus 128 ~~~~ 131 (198) +.++ T Consensus 399 f~t~ 402 (459) T 2e9q_A 399 FKTN 402 (459) T ss_dssp EESS T ss_pred EECC T ss_conf 9757 No 25 >2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A Probab=94.94 E-value=0.021 Score=33.06 Aligned_cols=77 Identities=12% Similarity=0.049 Sum_probs=47.8 Q ss_pred CCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHH-------HEEEEEEECCCCCEEEECCCCCEEEEEECC Q ss_conf 2000000015555544012100002222234334064213331-------001136623653023330232203453074 Q gi|254780919|r 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYG-------CWVSLEISANNGLQIYIPTGFAHGFMTLEM 121 (198) Q Consensus 49 ~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfg-------k~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d 121 (198) ++|-+++.||... -.++++|++|+...-+|+..-.+.+-. +.+...|++ +..+.||.|+++.-.+- . T Consensus 274 ~~gAM~~PHWn~n---A~eI~yV~~G~Grvqvv~~~g~~~~~~~~~~~~~~~~~~~l~~--G~v~VVP~g~p~~~~as-~ 347 (434) T 2ea7_A 274 KEGALLLPHYSSK---AIVIMVINEGEAKIELVGLSDQQQQKQQEESLEVQRYRAELSE--DDVFVIPAAYPVAINAT-S 347 (434) T ss_dssp CTTEEEEEEEESS---CEEEEEEEESCEEEEEEEEEECCCCTTSCCCEEEEEEEEEECT--TCEEEECTTCCEEEEES-S T ss_pred CCCCEECCCCCCC---CCEEEEEEECEEEEEEECCCCCCCCCCCCCCCCEEEEEEEECC--CCEEEECCCCCEEEECC-C T ss_conf 4781435615689---9789999816089999658987421113466531687616779--87899989993568828-9 Q ss_pred CCEEEEEECC Q ss_conf 5338972178 Q gi|254780919|r 122 NTEVIYKVTD 131 (198) Q Consensus 122 ~~~i~Y~~~~ 131 (198) +..++.+.++ T Consensus 348 ~l~~v~F~tn 357 (434) T 2ea7_A 348 NLNFFAFGIN 357 (434) T ss_dssp SEEEEEEEET T ss_pred CCEEEEEEEE T ss_conf 9079999963 No 26 >2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A* Probab=94.62 E-value=0.036 Score=31.73 Aligned_cols=76 Identities=14% Similarity=0.075 Sum_probs=45.3 Q ss_pred CCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHH-HEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEE Q ss_conf 2000000015555544012100002222234334064213331-001136623653023330232203453074533897 Q gi|254780919|r 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYG-CWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127 (198) Q Consensus 49 ~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfg-k~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y 127 (198) ++|-+++.|+...- +++++|++|+...-+|+..-.+.+.. +....+|.+ +..++||.|+++.-.+-+ +..++. T Consensus 247 ~~Gam~~PHwn~nA---~~i~yV~~G~grvqvv~~~g~~~~~~~~~~~~~l~~--GdvfVVPq~~~v~~~A~~-~~~~v~ 320 (397) T 2phl_A 247 EEGALFVPHYYSKA---IVILVVNEGEAHVELVGPKGNKETLEYESYRAELSK--DDVFVIPAAYPVAIKATS-NVNFTG 320 (397) T ss_dssp CTTEEEEEEEESSC---EEEEEEEESEEEEEEEEECC--CCSCEEEEEEEEET--TCEEEECTTCCEEEEESS-SEEEEE T ss_pred CCCCCCCCCCCCCC---CEEEEEEECEEEEEEEECCCCCCCCCEEEEEEEECC--CCEEEECCCCCEEEECCC-CCEEEE T ss_conf 36752477425788---689999735289999807997221001323135758--868999999916788079-916999 Q ss_pred EEC Q ss_conf 217 Q gi|254780919|r 128 KVT 130 (198) Q Consensus 128 ~~~ 130 (198) +-+ T Consensus 321 F~t 323 (397) T 2phl_A 321 FGI 323 (397) T ss_dssp EEE T ss_pred EEE T ss_conf 993 No 27 >2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.55A {Burkholderia xenovorans LB400} Probab=94.52 E-value=0.039 Score=31.55 Aligned_cols=67 Identities=18% Similarity=0.131 Sum_probs=47.1 Q ss_pred CCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEEE Q ss_conf 20000000155555440121000022222343340642133310011366236530233302322034530745338972 Q gi|254780919|r 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYK 128 (198) Q Consensus 49 ~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~ 128 (198) .++.--++|++.. +.-+++|++|++...+=| + ..+.|.+ +.+++||+|..|.+...++++.++-. T Consensus 51 g~~~~~~~H~H~~---~~e~~~Vl~G~~~~~~~g---------~-~~~~l~~--GD~i~iP~G~~H~~~n~sdd~~~Lei 115 (134) T 2o8q_A 51 GKEAKPTWHTHTV---GFQLFYVLRGWVEFEYED---------I-GAVMLEA--GGSAFQPPGVRHRELRHSDDLEVLEI 115 (134) T ss_dssp -----CCCEEECC---SCEEEEEEESEEEEEETT---------T-EEEEEET--TCEEECCTTCCEEEEEECTTCEEEEE T ss_pred CCCCCCCCEECCC---CEEEEEEEEEEEEEEEEE---------C-CEEECCC--CCEEEECCCCEEEEEECCCCEEEEEE T ss_conf 9999875278899---709999976089999986---------3-4897489--99899799895906967999599999 Q ss_pred EC Q ss_conf 17 Q gi|254780919|r 129 VT 130 (198) Q Consensus 129 ~~ 130 (198) .+ T Consensus 116 ~~ 117 (134) T 2o8q_A 116 VS 117 (134) T ss_dssp ES T ss_pred EC T ss_conf 99 No 28 >2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, plant protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B Probab=94.49 E-value=0.032 Score=32.02 Aligned_cols=74 Identities=15% Similarity=0.141 Sum_probs=33.7 Q ss_pred CCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCH-----HHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCC Q ss_conf 200000001555554401210000222223433406421-----333100113662365302333023220345307453 Q gi|254780919|r 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNS-----PTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNT 123 (198) Q Consensus 49 ~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~S-----pTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~ 123 (198) ++|-+|..|++.. -.+++++++|+...-+|+....+ .+=.+....+|.+ +..++||.|++|.-.+-++ - T Consensus 289 ~pGam~~PHwh~~---A~ei~yv~~G~Grvqvv~~~~~~~~~~~~~~~~~~~~~l~~--G~v~VVP~g~~~~~~a~~~-~ 362 (445) T 2cav_A 289 NEGALFVPHYNSR---ATVILVANEGRAEVELVGLEQQQQQGLESMQLRRYAATLSE--GDIIVIPSSFPVALKAASD-L 362 (445) T ss_dssp CTTEEEEEEEESS---CEEEEEEEESCEEEEEEEC-----------CCEEEEEEECT--TCEEEECTTCCEEEEESSS-E T ss_pred CCCCCCCCCCCCC---CCEEEEEEECEEEEEEECCCCCCCCCCCCCCCEEEEEEECC--CCEEEECCCCCEEEECCCC-C T ss_conf 3786027741788---74899997250799995155443333456661689888669--8489989998257871799-4 Q ss_pred EEEEE Q ss_conf 38972 Q gi|254780919|r 124 EVIYK 128 (198) Q Consensus 124 ~i~Y~ 128 (198) .++++ T Consensus 363 ~~v~f 367 (445) T 2cav_A 363 NMVGI 367 (445) T ss_dssp EEEEE T ss_pred EEEEE T ss_conf 29999 No 29 >1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle, 5-phospho-D- arabinonate; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 1j3q_A 1j3p_A 1j3r_A* Probab=94.41 E-value=0.034 Score=31.89 Aligned_cols=69 Identities=16% Similarity=0.207 Sum_probs=45.2 Q ss_pred CCCEEEE------CCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCC Q ss_conf 2000000------0155555440121000022222343340642133310011366236530233302322034530745 Q gi|254780919|r 49 DCGTIRG------LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122 (198) Q Consensus 49 ~kgvlRG------lH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~ 122 (198) .+|.+.| .|+|... .+.-+..|++|+....+-|.. +....+.+.+ +..++||+|.+|...-..|. T Consensus 75 ~PG~v~~e~~~t~gH~H~~~-~~~E~~~Vl~G~g~~~l~d~~------~~~~~~~v~~--Gd~v~iP~g~~H~~~N~Gd~ 145 (190) T 1x82_A 75 YPGKVGKEFFFTKGHFHAKL-DRAEVYVALKGKGGMLLQTPE------GDAKWISMEP--GTVVYVPPYWAHRTVNIGDE 145 (190) T ss_dssp CCCEETTEECBCCCBBCSST-TCCEEEEEEESCEEEEEECTT------CCEEEEEECT--TCEEEECTTCEEEEEECSSS T ss_pred CCCCCCCCCCCCCCEECCCC-CCCEEEEEEECEEEEEEECCC------CCEEEEEECC--CCEEEECCCCEEEEEECCCC T ss_conf 89840575335764368998-976499999586999996258------9769999779--96999689973984888858 Q ss_pred CEEE Q ss_conf 3389 Q gi|254780919|r 123 TEVI 126 (198) Q Consensus 123 ~~i~ 126 (198) ..+. T Consensus 146 ~l~~ 149 (190) T 1x82_A 146 PFIF 149 (190) T ss_dssp CEEE T ss_pred CEEE T ss_conf 9899 No 30 >2oa2_A BH2720 protein; 10175341, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.41A {Bacillus halodurans} Probab=93.87 E-value=0.066 Score=30.24 Aligned_cols=73 Identities=19% Similarity=0.205 Sum_probs=48.7 Q ss_pred CCCCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEE Q ss_conf 25200000001555554401210000222223433406421333100113662365302333023220345307453389 Q gi|254780919|r 47 SFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126 (198) Q Consensus 47 s~~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~ 126 (198) +..+|.-.|+|++.. ...+++|++|+....+-+-+ .-......+.+ +.+++||+|..|++...++....+ T Consensus 49 ~i~PG~~~~~H~H~~---~eE~~~Vl~G~~~v~~~~~~-----~~l~~~~~v~~--Gd~i~iP~g~~H~~~N~g~epl~~ 118 (148) T 2oa2_A 49 SIQVGEDIGLEIHPH---LDQFLRVEEGRGLVQMGHRQ-----DNLHFQEEVFD--DYAILIPAGTWHNVRNTGNRPLKL 118 (148) T ss_dssp EECTTCBCCCBCCTT---CEEEEEEEESEEEEEEESBT-----TBCCEEEEEET--TCEEEECTTCEEEEEECSSSCEEE T ss_pred EECCCCCCCCCCCCC---CCEEEEEECCCEEEEECCEE-----CCCCCEEECCC--CCEEEECCCCCEEEEECCCCCEEE T ss_conf 999999986542989---77899998087999989881-----33430152189--989997999729979899899899 Q ss_pred EEE Q ss_conf 721 Q gi|254780919|r 127 YKV 129 (198) Q Consensus 127 Y~~ 129 (198) +.+ T Consensus 119 l~i 121 (148) T 2oa2_A 119 YSI 121 (148) T ss_dssp EEE T ss_pred EEE T ss_conf 999 No 31 >1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A Probab=93.50 E-value=0.21 Score=27.34 Aligned_cols=109 Identities=12% Similarity=0.047 Sum_probs=66.6 Q ss_pred CCCEEEEEECHHHHHHC-CCCCCEEEEEEEECCCCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEE Q ss_conf 79504211088989867-99874134423312520000000155555440121000022222343340642133310011 Q gi|254780919|r 17 SRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVS 95 (198) Q Consensus 17 ~RG~f~e~f~~~~~~~~-~~~~~~~Q~n~S~s~~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~ 95 (198) .+|.-...-+...|..+ ++........ ..+|-++..|++-. -..+++|++|++..-+++-- .+=++.+. T Consensus 51 ~~g~~vt~~~~~~fP~Ln~lGiS~arv~----l~Pgg~~~pH~HP~---A~E~~yV~~G~~~v~~v~~~---~~~~~~~~ 120 (201) T 1fi2_A 51 PNGSAVTELDVAEWPGTNTLGVSMNRVD----FAPGGTNPPHIHPR---ATEIGMVMKGELLVGILGSL---DSGNKLYS 120 (201) T ss_dssp TTSEEEEEESTTTCGGGTTSSCEEEEEE----ECTTCEEEEEECTT---CCEEEEEEESEEEEEEECCG---GGTTCEEE T ss_pred CCCCEEEEEEHHHCCCCCCCCEEEEEEE----ECCCCCCCCCCCCC---CCEEEEEEEEEEEEEEEECC---CCCCCEEE T ss_conf 7783899963451956354645489999----87997837842889---88799999325999999546---87870288 Q ss_pred EEEECCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCCHH Q ss_conf 366236530233302322034530745338972178767101 Q gi|254780919|r 96 LEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEH 137 (198) Q Consensus 96 ~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~~~~~y~p~~ 137 (198) ..|.+ +.+++||.|+.|-.+...++..+.+..=+-=+|.. T Consensus 121 ~~l~~--Gdv~vvP~G~~H~~~N~g~~~a~~~~~f~s~~Pg~ 160 (201) T 1fi2_A 121 RVVRA--GETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGI 160 (201) T ss_dssp EEEET--TCEEEECTTCCEEEEECSSSCEEEEEEESSSCCCC T ss_pred EECCC--CEEEEECCCCEEEEEECCCCCEEEEEEECCCCCCC T ss_conf 87158--81999879971899974999889999967999873 No 32 >1juh_A Quercetin 2,3-dioxygenase; copper, cupin, glycoprotein, beta sandwich, oxidoreductase; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A* Probab=93.42 E-value=0.08 Score=29.76 Aligned_cols=69 Identities=17% Similarity=0.149 Sum_probs=47.2 Q ss_pred CCEEEE--CCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEE Q ss_conf 000000--015555544012100002222234334064213331001136623653023330232203453074533897 Q gi|254780919|r 50 CGTIRG--LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127 (198) Q Consensus 50 kgvlRG--lH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y 127 (198) +|--.| .|++.. +...++|++|++...+.|-.. ....+.|.+ +..++||+|..|+|...++.+.++. T Consensus 57 ~g~~~g~~~H~H~~---~~E~~~Vl~G~~~~~~~~~~~------~~~~~~l~~--GD~~~~P~g~~H~~~n~~~~~~~l~ 125 (350) T 1juh_A 57 HSDALGVLPHIHQK---HYENFYCNKGSFQLWAQSGNE------TQQTRVLSS--GDYGSVPRNVTHTFQIQDPDTEMTG 125 (350) T ss_dssp CCSSCSSCCEECSS---CEEEEEEEESEEEEEEEETTS------CCEEEEEET--TCEEEECTTEEEEEEECSTTEEEEE T ss_pred CCCCCCCCCCCCCC---CEEEEEEEEEEEEEEEECCCC------CEEEEEECC--CCEEEECCCCEEEEEECCCCCEEEE T ss_conf 88878887736477---648999998699999963789------717999689--9889959998488684799847999 Q ss_pred EE Q ss_conf 21 Q gi|254780919|r 128 KV 129 (198) Q Consensus 128 ~~ 129 (198) .. T Consensus 126 v~ 127 (350) T 1juh_A 126 VI 127 (350) T ss_dssp EE T ss_pred EE T ss_conf 97 No 33 >2q30_A Uncharacterized protein; YP_388795.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp} Probab=93.35 E-value=0.088 Score=29.52 Aligned_cols=63 Identities=14% Similarity=0.116 Sum_probs=44.2 Q ss_pred CCCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCE Q ss_conf 52000000015555544012100002222234334064213331001136623653023330232203453074533 Q gi|254780919|r 48 FDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124 (198) Q Consensus 48 ~~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~ 124 (198) .++|.-.++|.+..+ ...+++|++|++...+ | .-..+.|.+ +..+++|+|.-|++.+.+|... T Consensus 40 ~~pG~~~~~H~H~~~--~e~~~~Vl~G~~~~~~-~---------~~~~~~l~~--Gd~i~~p~g~~H~~~a~~d~~~ 102 (110) T 2q30_A 40 FKAGQELPVHSHNIE--GELNIVVLEGEGEFVG-D---------GDAVIPAPR--GAVLVAPISTPHGVRAVTDMKV 102 (110) T ss_dssp ECTTCEEEEECCSSS--CEEEEEEEESCEEEEC-G---------GGCEEEECT--TEEEEEETTSCEEEEESSSEEE T ss_pred ECCCCCCCCEECCCC--CCEEEEEEEEEEEEEE-C---------CCCEEEECC--CCEEEECCCCEEEEEECCCCEE T ss_conf 999989675388999--7389999983999995-4---------650179229--9599988989999898998399 No 34 >1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A* Probab=93.33 E-value=0.072 Score=30.00 Aligned_cols=61 Identities=20% Similarity=0.118 Sum_probs=37.7 Q ss_pred CCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCC Q ss_conf 20000000155555440121000022222343340642133310011366236530233302322034530745 Q gi|254780919|r 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122 (198) Q Consensus 49 ~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~ 122 (198) ++++|.=-|+-.. ..+++|++|+...-+|+- +.-.++.| +.+..+.||+|.+|=.+...|+ T Consensus 57 ~P~~l~lP~~~~A----~~l~yV~~G~g~v~~v~~-------~~~~~~~l--~~GDv~~iPaG~~h~~~N~gd~ 117 (416) T 1uij_A 57 KPNTILLPHHADA----DFLLFVLSGRAILTLVNN-------DDRDSYNL--HPGDAQRIPAGTTYYLVNPHDH 117 (416) T ss_dssp CTTEEEEEEEESE----EEEEEEEESCEEEEEECS-------SCEEEEEE--CTTEEEEECTTCEEEEEECCSS T ss_pred CCCEEECCCCCCC----CEEEEEEECEEEEEEEEC-------CCEEEEEC--CCCCEEEECCCCEEEEEECCCC T ss_conf 7981667776799----859999918899999958-------97258860--6888799789955999967999 No 35 >1juh_A Quercetin 2,3-dioxygenase; copper, cupin, glycoprotein, beta sandwich, oxidoreductase; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A* Probab=92.90 E-value=0.037 Score=31.65 Aligned_cols=90 Identities=18% Similarity=0.316 Sum_probs=59.5 Q ss_pred CCCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEE Q ss_conf 52000000015555544012100002222234334064213331001136623653023330232203453074533897 Q gi|254780919|r 48 FDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127 (198) Q Consensus 48 ~~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y 127 (198) ..++-.+..|++.. ....++|++|+....+.|-| .+.|.+ +..++||+|++|.|..-++.+.+++ T Consensus 258 ~~~~~~~~~h~~~~---~~e~~~v~~G~~~~~i~~~~----------~~~l~~--GD~~~vP~g~~h~~~~~~~~~~~~~ 322 (350) T 1juh_A 258 TTPSTVTVPTWSFP---GACAFQVQEGRVVVQIGDYA----------ATELGS--GDVAFIPGGVEFKYYSEAYFSKVLF 322 (350) T ss_dssp CCCTTSCCCCBCCS---SCEEEEEEESCEEEEETTSC----------CEEECT--TCEEEECTTCCEEEEESSSSEEEEE T ss_pred ECCCCCCCCCCCCC---CCEEEEEEECCEEEEECCCC----------EEEECC--CCEEEECCCCCEEEEECCCCCEEEE T ss_conf 33788788751588---76799996386899966753----------687269--9989989999789784787606999 Q ss_pred EECCCCCCH---HCEECCCCCCCCCCCC Q ss_conf 217876710---1702168880117747 Q gi|254780919|r 128 KVTDFYSVE---HDSGVAWQDKSIDITW 152 (198) Q Consensus 128 ~~~~~y~p~---~e~~i~~~Dp~l~i~W 152 (198) ...+.-.-+ .+.|..|..+.+-..| T Consensus 323 ~~~~~~g~~~~~~~~g~~~~~~~~P~~~ 350 (350) T 1juh_A 323 VSSGSDGLDQNLVNGGEEWSSVSFPADW 350 (350) T ss_dssp EEESSSSHHHHHHHHSEEECCSSCCSCC T ss_pred EECCCCCHHHHHHHCCCCCCCCCCCCCC T ss_conf 9728884145452235435568899899 No 36 >1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like protein, protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A* Probab=92.76 E-value=0.067 Score=30.21 Aligned_cols=72 Identities=10% Similarity=0.042 Sum_probs=49.4 Q ss_pred CCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEEE Q ss_conf 20000000155555440121000022222343340642133310011366236530233302322034530745338972 Q gi|254780919|r 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYK 128 (198) Q Consensus 49 ~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~ 128 (198) .+|..-++|.+. . .-+++|++|+....+-|-+.+ .-++-..+.+.+ +..++||+|..|.+...+++..+.++ T Consensus 49 ~PG~~~~~H~H~--~--~E~~~Vl~G~g~~~~~~~~~~--~~~~~~~~~~~~--Gd~i~vP~~~~H~~~N~g~~e~l~~l 120 (163) T 1lr5_A 49 SPGQRTPIHRHS--C--EEVFTVLKGKGTLLMGSSSLK--YPGQPQEIPFFQ--NTTFSIPVNDPHQVWNSDEHEDLQVL 120 (163) T ss_dssp CTTCBCCEEEES--S--CEEEEEEECCEEEEECCSSSS--SCCSCEEEEECT--TEEEEECTTCCEEEECCCSSSCEEEE T ss_pred CCCCCCCCCCCC--C--CEEEEEEEEEEEEEECCCCCC--CCCCCEEEEECC--CCEEEECCCCCEEEEECCCCCCEEEE T ss_conf 989868867178--8--579999973799998983243--467626999569--99999797993897989999887999 No 37 >3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A Probab=92.45 E-value=0.22 Score=27.27 Aligned_cols=73 Identities=25% Similarity=0.352 Sum_probs=46.1 Q ss_pred CEEEEEEEECCCCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEE Q ss_conf 41344233125200000001555554401210000222223433406421333100113662365302333023220345 Q gi|254780919|r 38 VFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117 (198) Q Consensus 38 ~~~Q~n~S~s~~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~ 117 (198) .|....+.+ .+|.--++|++. . ...++|++|+....+-| + | ..+.|.+ +..++||+|..|.+. T Consensus 38 ~f~~~~~~~--~PG~~~~~H~H~--~--~e~~yvl~G~~~~~~~~---~----g--~~~~l~~--Gd~~~ip~g~~H~~~ 100 (145) T 3ht1_A 38 RFVLTEFEV--SPNGSTPPHFHE--W--EHEIYVLEGSMGLVLPD---Q----G--RTEEVGP--GEAIFIPRGEPHGFV 100 (145) T ss_dssp SEEEEEEEE--EEEEECCCEECS--S--CEEEEEEEECEEEEEGG---G----T--EEEEECT--TCEEEECTTCCBEEE T ss_pred CEEEEEEEE--CCCCCCCCEECC--C--CEEEEEEECEEEEEECC---C----C--EEEEECC--CCEEECCCCCEEEEE T ss_conf 279999999--989877789788--9--66999998858999789---9----8--8999879--978973899919989 Q ss_pred EECCCCEEEE Q ss_conf 3074533897 Q gi|254780919|r 118 TLEMNTEVIY 127 (198) Q Consensus 118 ~L~d~~~i~Y 127 (198) ..++...... T Consensus 101 N~g~~~~~~l 110 (145) T 3ht1_A 101 TGPGQTCRFL 110 (145) T ss_dssp CCTTCCEEEE T ss_pred ECCCCCEEEE T ss_conf 8999999999 No 38 >2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PSI-2, protein structure initiative; 2.50A {Neisseria meningitidis} Probab=92.15 E-value=0.091 Score=29.42 Aligned_cols=59 Identities=20% Similarity=0.184 Sum_probs=39.4 Q ss_pred CEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEE Q ss_conf 000000155555440121000022222343340642133310011366236530233302322034530745338 Q gi|254780919|r 51 GTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125 (198) Q Consensus 51 gvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i 125 (198) |.+ -+|++.. +...++|++|++..-+.|- ..+.|.+ +.+++||+|..|.+.+.++...+ T Consensus 38 g~~-~~H~H~~---~dE~~~Vl~G~~~~~~~d~----------~~~~l~~--Gd~~~iP~G~~H~~~~~~~~~~l 96 (107) T 2i45_A 38 GDY-GWHTHGY---SDKVLFAVEGDMAVDFADG----------GSMTIRE--GEMAVVPKSVSHRPRSENGCSLV 96 (107) T ss_dssp EEC-CCBCC-----CCEEEEESSSCEEEEETTS----------CEEEECT--TEEEEECTTCCEEEEEEEEEEEE T ss_pred CCC-CCEECCC---CCEEEEEEEEEEEEEEECC----------EEEEECC--CCEEEECCCCCEECCCCCCCEEE T ss_conf 955-7449989---8749999960999999165----------6999259--98999689994804189995599 No 39 >1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A* Probab=91.90 E-value=0.14 Score=28.30 Aligned_cols=66 Identities=18% Similarity=0.257 Sum_probs=46.1 Q ss_pred CCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEEE Q ss_conf 20000000155555440121000022222343340642133310011366236530233302322034530745338972 Q gi|254780919|r 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYK 128 (198) Q Consensus 49 ~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~ 128 (198) .+|.-..+|.+.. ...+++|++|++... +| + ..+.|.+ +..++||+|..|+|...++++.+... T Consensus 54 ~pG~~~~~h~H~~---~~e~~~vl~G~~~~~-~~--------~--~~~~l~~--Gd~~~~p~~~~H~~~n~~~~~~~~~~ 117 (337) T 1y3t_A 54 GKGDAFPLHVHKD---THEGILVLDGKLELT-LD--------G--ERYLLIS--GDYANIPAGTPHSYRMQSHRTRLVSY 117 (337) T ss_dssp CTTCEEEEEECTT---CCEEEEEEESCEEEE-ET--------T--EEEEECT--TCEEEECTTCCEEEEECSTTEEEEEE T ss_pred CCCCCCCCCCCCC---CEEEEEEEECEEEEE-EC--------C--EEEEECC--CCEEEECCCCCEEEEECCCCCEEEEE T ss_conf 9999788668899---619999995889999-99--------9--9999718--98899489996899984898489999 Q ss_pred EC Q ss_conf 17 Q gi|254780919|r 129 VT 130 (198) Q Consensus 129 ~~ 130 (198) ++ T Consensus 118 ~~ 119 (337) T 1y3t_A 118 TM 119 (337) T ss_dssp EE T ss_pred EC T ss_conf 76 No 40 >2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloenzyme, trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A Probab=91.82 E-value=0.11 Score=29.02 Aligned_cols=65 Identities=12% Similarity=0.196 Sum_probs=48.2 Q ss_pred CCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEE Q ss_conf 000000015555544012100002222234334064213331001136623653023330232203453074533897 Q gi|254780919|r 50 CGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127 (198) Q Consensus 50 kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y 127 (198) +|.-|-+|.+.. +-..++++|++...+.+ -|+...+.|.+ +..+++|+|+.|+++.+++...+.. T Consensus 40 p~~r~~~H~h~~----~E~fyvl~G~~~l~v~~-------~G~~~~~~l~~--GDi~~~P~~v~Hs~q~~gd~~g~vl 104 (286) T 2qnk_A 40 PNTRKDYHIEEG----EEVFYQLEGDMVLRVLE-------QGKHRDVVIRQ--GEIFLLPARVPHSPQRFANTVGLVV 104 (286) T ss_dssp CBCCCCEEECSS----CEEEEEEESCEEEEEEE-------TTEEEEEEECT--TEEEEECTTCCEEEEECTTCEEEEE T ss_pred CCCCCCCCCCCC----CEEEEEEECEEEEEEEC-------CCCEEEEEECC--CCEEEECCCCCCCCEECCCCCEEEE T ss_conf 997774634884----31999992679999965-------99578987089--9889958999716545489866999 No 41 >1o4t_A Putative oxalate decarboxylase; TM1287, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.95A {Thermotoga maritima} SCOP: b.82.1.9 Probab=91.44 E-value=0.18 Score=27.72 Aligned_cols=63 Identities=17% Similarity=0.183 Sum_probs=44.8 Q ss_pred CCCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEE Q ss_conf 5200000001555554401210000222223433406421333100113662365302333023220345307453389 Q gi|254780919|r 48 FDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126 (198) Q Consensus 48 ~~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~ 126 (198) ..+|.-.++|++.. +..+++|++|+....+ | ++ .+.+.+ +..++||+|..|++...++..... T Consensus 64 l~PG~~~~~H~H~~---~~E~~~vl~G~~~~~~-~--------~~--~~~l~~--Gd~i~ip~g~~H~~~N~g~~~l~~ 126 (133) T 1o4t_A 64 LPPGSSVGLHKHEG---EFEIYYILLGEGVFHD-N--------GK--DVPIKA--GDVCFTDSGESHSIENTGNTDLEF 126 (133) T ss_dssp ECTTCEEEEEECCS---EEEEEEEEESEEEEEE-T--------TE--EEEEET--TEEEEECTTCEEEEECCSSSCEEE T ss_pred ECCCCCCCCEECCC---CEEEEEEECCCEEEEE-C--------CE--EEEECC--CEEEEECCCCEEEEEECCCCCEEE T ss_conf 99998668788899---7499999478289998-8--------70--599128--849998998969989999999999 No 42 >1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices, merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A Probab=91.19 E-value=0.17 Score=27.84 Aligned_cols=94 Identities=16% Similarity=0.175 Sum_probs=57.9 Q ss_pred CEEEECCCEEEEE--ECHH--HHHHCCCCCCEEEEEEEECCCCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCH Q ss_conf 6220379504211--0889--89867998741344233125200000001555554401210000222223433406421 Q gi|254780919|r 12 RKFEDSRGWFSQT--YSSK--LLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNS 87 (198) Q Consensus 12 ~~f~D~RG~f~e~--f~~~--~~~~~~~~~~~~Q~n~S~s~~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~S 87 (198) .+++-+-|.+..+ |..+ .+..++ ....... ..++|.++-.|+- . -+.+++|++|+...-+|+-. T Consensus 13 ~~~~~~~G~~~~~~~~~~~~~~l~~l~-~~~~~~~----~i~p~~l~~Ph~~--~--a~ev~yV~~G~g~~~~v~~~--- 80 (178) T 1dgw_A 13 TLFKNQHGSLRLLQRFNEDTEKLENLR-DYRVLEY----CSKPNTLLLPHHS--D--SDLLVLVLEGQAILVLVNPD--- 80 (178) T ss_dssp EEEEETTEEEEEECCTTSSCGGGGGGT-TEEEEEE----EECTTEEEEEEEE--S--SEEEEEEEESEEEEEEEETT--- T ss_pred CCEECCCCEEEEECCCCCCCHHCCCCC-CEEEEEE----EECCCCCCCCCCC--C--CCEEEEEEEEEEEEEEEECC--- T ss_conf 724889973999714576442316643-1699999----9889978578789--9--98899999818999999779--- Q ss_pred HHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCC Q ss_conf 333100113662365302333023220345307453 Q gi|254780919|r 88 PTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNT 123 (198) Q Consensus 88 pTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~ 123 (198) ...++.|.+ +..++||+|+.|......++- T Consensus 81 ----~~~~~~l~~--GDv~~vP~G~~h~i~N~~~~e 110 (178) T 1dgw_A 81 ----GRDTYKLDQ--GDAIKIQAGTPFYLINPDNNQ 110 (178) T ss_dssp ----EEEEEEEET--TEEEEECTTCCEEEEECCSSS T ss_pred ----CEEEEEECC--CCEEEECCCCEEEEEECCCCC T ss_conf ----808999618--978998999779999879997 No 43 >3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSGXRC, structural genomics; 2.00A {Halorhodospira halophila SL1} Probab=90.97 E-value=0.21 Score=27.31 Aligned_cols=65 Identities=14% Similarity=0.109 Sum_probs=44.6 Q ss_pred CCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEEE Q ss_conf 20000000155555440121000022222343340642133310011366236530233302322034530745338972 Q gi|254780919|r 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYK 128 (198) Q Consensus 49 ~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~ 128 (198) ++|.--.+|.+. . ..+++|++|+.... +| |+ .+.+.+ +..++||+|..|++...+++-.+.++ T Consensus 64 ~PG~~~~~H~H~--~--~E~~~vl~G~~~~~-v~--------g~--~~~l~~--Gd~i~ip~~~~H~~~N~g~~e~l~fl 126 (167) T 3ibm_A 64 EPGGYTTLERHE--H--THVVMVVRGHAEVV-LD--------DR--VEPLTP--LDCVYIAPHAWHQIHATGANEPLGFL 126 (167) T ss_dssp CTTCBCCCBBCS--S--CEEEEEEESEEEEE-ET--------TE--EEEECT--TCEEEECTTCCEEEEEESSSCCEEEE T ss_pred CCCCCCCCCCCC--C--EEEEEEECCEEEEE-EC--------CE--EEECCC--CCEEEECCCCCEEEEECCCCCCEEEE T ss_conf 899717771120--2--49999991989999-86--------18--997579--97999897997997969999899999 Q ss_pred EC Q ss_conf 17 Q gi|254780919|r 129 VT 130 (198) Q Consensus 129 ~~ 130 (198) |- T Consensus 127 ci 128 (167) T 3ibm_A 127 CI 128 (167) T ss_dssp EE T ss_pred EE T ss_conf 99 No 44 >1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A* Probab=90.48 E-value=0.24 Score=27.00 Aligned_cols=66 Identities=15% Similarity=0.268 Sum_probs=46.3 Q ss_pred CCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEEE Q ss_conf 20000000155555440121000022222343340642133310011366236530233302322034530745338972 Q gi|254780919|r 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYK 128 (198) Q Consensus 49 ~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~ 128 (198) .+|....+|++.. +..+++|++|++... +| ++ .+.|.+ +..++||+|..|+|...++++.++.. T Consensus 226 ~~g~~~~~H~H~~---~~e~~~v~~G~~~~~-~~--------~~--~~~~~~--Gd~~~vP~g~~H~~~n~~~~~~~l~~ 289 (337) T 1y3t_A 226 PKGDRIVDHYHEY---HTETFYCLEGQMTMW-TD--------GQ--EIQLNP--GDFLHVPANTVHSYRLDSHYTKMVGV 289 (337) T ss_dssp CSCCCCCCEECSS---CEEEEEEEESCEEEE-ET--------TE--EEEECT--TCEEEECTTCCEEEEECSSSEEEEEE T ss_pred CCCCCCCCCCCCC---CCEEEEEEEEEEEEE-EC--------CE--EEEECC--CCEEEECCCCCEEEEECCCCEEEEEE T ss_conf 9998689738477---538999996689999-99--------99--999479--98899896996786958999499999 Q ss_pred EC Q ss_conf 17 Q gi|254780919|r 129 VT 130 (198) Q Consensus 129 ~~ 130 (198) .+ T Consensus 290 ~~ 291 (337) T 1y3t_A 290 LV 291 (337) T ss_dssp EE T ss_pred EC T ss_conf 87 No 45 >3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A* Probab=90.15 E-value=0.4 Score=25.72 Aligned_cols=79 Identities=10% Similarity=0.071 Sum_probs=43.9 Q ss_pred EEEEECCCCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCH-------------------------------HHH Q ss_conf 4233125200000001555554401210000222223433406421-------------------------------333 Q gi|254780919|r 42 DNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNS-------------------------------PTY 90 (198) Q Consensus 42 ~n~S~s~~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~S-------------------------------pTf 90 (198) .++-+. .+|+.-.+|++... -.-+..++.|+=..+++...... |-+ T Consensus 174 ~~l~iG-~~gs~T~~H~D~~~--~~~~~~qi~G~K~w~L~pP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 250 (336) T 3k2o_A 174 RWFVMG-PPRSGTGIHIDPLG--TSAWNALVQGHKRWCLFPTSTPRELIKVTRDEGGNQQDEAITWFNVIYPRTQLPTWP 250 (336) T ss_dssp EEEEEE-CTTCEEEEECCGGG--CEEEEEEEESCEEEEEECTTSCHHHHCCCHHHHGGGTTCHHHHHHHTGGGGGSTTSC T ss_pred EEEEEC-CCCCCCCCEEECCC--CCEEEEEEECCEEEEEECCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCC T ss_conf 699988-99988872052057--770899984454899968764221565554446777865310013437254427430 Q ss_pred --HHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEE Q ss_conf --10011366236530233302322034530745338 Q gi|254780919|r 91 --GCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125 (198) Q Consensus 91 --gk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i 125 (198) -+...++|.+ |.+||||+|.+|...+|++...| T Consensus 251 ~~~~~~e~~l~p--GD~LfIP~gWwH~V~nl~~sisv 285 (336) T 3k2o_A 251 PEFKPLEILQKP--GETVFVPGGWWHVVLNLDTTIAI 285 (336) T ss_dssp GGGCCEEEEECT--TCEEEECTTCEEEEEESSCEEEE T ss_pred CCCCEEEEEECC--CCEEEECCCCEEEEECCCCEEEE T ss_conf 137359999899--99899689970898738986999 No 46 >2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina ncimb 400} Probab=89.49 E-value=0.33 Score=26.25 Aligned_cols=61 Identities=23% Similarity=0.349 Sum_probs=43.5 Q ss_pred CCCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEE Q ss_conf 5200000001555554401210000222223433406421333100113662365302333023220345307453389 Q gi|254780919|r 48 FDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126 (198) Q Consensus 48 ~~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~ 126 (198) ..+|..-.+|.+ + ...+++|++|+....+ | + ..+.|.+ +.+++||+|..|++.+++| +.++ T Consensus 41 ~~~G~~~~~H~H--~--~~e~~~vl~G~~~~~~-~--------g--~~~~l~~--Gd~~~ip~~~~H~~~~~~d-~~~i 101 (116) T 2pfw_A 41 FDKGAEGYVHAH--R--HSQVSYVVEGEFHVNV-D--------G--VIKVLTA--GDSFFVPPHVDHGAVCPTG-GILI 101 (116) T ss_dssp ECTTEEEEEECC--S--SEEEEEEEEECEEEEE-T--------T--EEEEECT--TCEEEECTTCCEEEEESSC-EEEE T ss_pred ECCCCCCCCEEC--C--CCEEEEEECCCEEEEE-C--------C--EEEEECC--CCEEEECCCCCEEEEECCC-EEEE T ss_conf 999970788989--8--6159999729799998-9--------9--9999759--8499989699696797999-0999 No 47 >1v70_A Probable antibiotics synthesis protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.30A {Thermus thermophilus HB8} SCOP: b.82.1.9 PDB: 2dct_A Probab=89.35 E-value=0.32 Score=26.25 Aligned_cols=65 Identities=15% Similarity=0.301 Sum_probs=44.6 Q ss_pred CCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEEE Q ss_conf 20000000155555440121000022222343340642133310011366236530233302322034530745338972 Q gi|254780919|r 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYK 128 (198) Q Consensus 49 ~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~ 128 (198) .+|.--++|.+. .+...++|++|++...+ + + ..+.|.+ +.++++|+|+.|++.+.++...+.+. T Consensus 36 ~pG~~~~~H~H~---~~~e~~~vl~G~~~~~~-----~----~--~~~~l~~--Gd~~~~p~~~~H~~~n~~~~~~~~l~ 99 (105) T 1v70_A 36 LPGQAQKVHVHE---GSDKVYYALEGEVVVRV-----G----E--EEALLAP--GMAAFAPAGAPHGVRNESASPALLLV 99 (105) T ss_dssp CTTCEEEEECCS---SCEEEEEEEESCEEEEE-----T----T--EEEEECT--TCEEEECTTSCEEEECCSSSCEEEEE T ss_pred CCCCCCCCEECC---CCCEEEEEEECCEEEEE-----E----E--EEEECCC--CEEEEECCCCEEEEEECCCCCEEEEE T ss_conf 999898778989---98499999859889999-----4----1--0017048--85999879994998999999999999 Q ss_pred E Q ss_conf 1 Q gi|254780919|r 129 V 129 (198) Q Consensus 129 ~ 129 (198) + T Consensus 100 v 100 (105) T 1v70_A 100 V 100 (105) T ss_dssp E T ss_pred E T ss_conf 9 No 48 >3fjs_A Uncharacterized protein with RMLC-like cupin fold; YP_298287.1, protein of unknown function with RMLC-like cupin fold; HET: MSE; 1.90A {Ralstonia eutropha JMP134} Probab=89.33 E-value=0.46 Score=25.40 Aligned_cols=66 Identities=20% Similarity=0.320 Sum_probs=46.4 Q ss_pred CCCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEE Q ss_conf 52000000015555544012100002222234334064213331001136623653023330232203453074533897 Q gi|254780919|r 48 FDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127 (198) Q Consensus 48 ~~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y 127 (198) .++|.-=..|.+ |. ..+++|++|++...+ | + ....|.+ +..++||+|..|++.+++|...+++ T Consensus 43 l~~G~~~~~H~h--~~--~~~~~VL~G~~~~~~-~--------~--~~~~l~~--Gd~~~i~~~~~H~~~a~~d~~~~l~ 105 (114) T 3fjs_A 43 LPAGKQVGSHSV--AG--PSTIQCLEGEVEIGV-D--------G--AQRRLHQ--GDLLYLGAGAAHDVNAITNTSLLVT 105 (114) T ss_dssp ECTTCEEEEECC--SS--CEEEEEEESCEEEEE-T--------T--EEEEECT--TEEEEECTTCCEEEEESSSEEEEEE T ss_pred ECCCCCCCCEEC--CC--CEEEEEEECEEEEEE-C--------C--EEEEECC--CEEEECCCCCEEEEEECCCCEEEEE T ss_conf 998983888899--99--889999969899999-8--------6--7899469--8089869999899198889779999 Q ss_pred EEC Q ss_conf 217 Q gi|254780919|r 128 KVT 130 (198) Q Consensus 128 ~~~ 130 (198) .+. T Consensus 106 vv~ 108 (114) T 3fjs_A 106 VVL 108 (114) T ss_dssp EEC T ss_pred EEE T ss_conf 998 No 49 >3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* Probab=88.44 E-value=0.42 Score=25.60 Aligned_cols=86 Identities=14% Similarity=0.206 Sum_probs=51.3 Q ss_pred CCCCEEEEEEEECCCCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHH--------------CCCCHHHH-----HHEEE Q ss_conf 987413442331252000000015555544012100002222234334--------------06421333-----10011 Q gi|254780919|r 35 LQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVD--------------IRRNSPTY-----GCWVS 95 (198) Q Consensus 35 ~~~~~~Q~n~S~s~~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvD--------------lR~~SpTf-----gk~~~ 95 (198) .+...+|-..-++ -+|+.-.+|..-. +..=...++.|+=..+++- ....+..| .+... T Consensus 170 ~~~P~v~k~~lmG-~kgS~T~fHiD~~--gts~w~~vi~G~K~w~L~PPt~~nl~~y~~~~~s~~~~~~~~~d~~~~~~~ 246 (397) T 3kv9_A 170 FPKPFVQKYCLMG-VQDSYTDFHIDFG--GTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSVTQSEVFFGDKVDKCYK 246 (397) T ss_dssp SCCCCCSCEEEEE-CTTCEEEEECCGG--GCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTSGGGGGSCGGGGSSCCEE T ss_pred CCCCCCEEEEEEE-CCCCCCCEEECCC--CCCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHCCCEEE T ss_conf 5688624699990-7999998238889--985689987678999997998557554555555665442462453466599 Q ss_pred EEEECCCCCEEEECCCCCEEEEEECCCCEE Q ss_conf 366236530233302322034530745338 Q gi|254780919|r 96 LEISANNGLQIYIPTGFAHGFMTLEMNTEV 125 (198) Q Consensus 96 ~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i 125 (198) ++|.+ |..||||+|..|...+++|.-.+ T Consensus 247 v~l~p--GdtLfIPsGW~HaV~n~edSia~ 274 (397) T 3kv9_A 247 CVVKQ--GHTLFVPTGWIHAVLTSQDCMAF 274 (397) T ss_dssp EEEET--TCEEEECTTCEEEEEEEEEEEEE T ss_pred EEECC--CCEEEECCCCEEEEECCCCEEEE T ss_conf 99889--98898689962899748787997 No 50 >2b8m_A Hypothetical protein MJ0764; 1499583, structural genomics, joint center for structural genomics, JCSG; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18 Probab=87.94 E-value=0.4 Score=25.75 Aligned_cols=65 Identities=12% Similarity=0.106 Sum_probs=45.0 Q ss_pred CCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEEE Q ss_conf 20000000155555440121000022222343340642133310011366236530233302322034530745338972 Q gi|254780919|r 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYK 128 (198) Q Consensus 49 ~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~ 128 (198) .+|.--++|.+. . ..+++|++|+....+ + --....+.+ +..++||+|..|++...++....... T Consensus 35 ~pG~~~p~H~H~--~--~e~~~Vl~G~~~~~~-~---------~~e~~~v~~--Gd~~~ip~~~~H~~~N~~~e~~~~lv 98 (117) T 2b8m_A 35 PRGEQMPKHYSN--S--YVHLIIIKGEMTLTL-E---------DQEPHNYKE--GNIVYVPFNVKMLIQNINSDILEFFV 98 (117) T ss_dssp ETTCBCCCEECS--S--CEEEEEEESEEEEEE-T---------TSCCEEEET--TCEEEECTTCEEEEECCSSSEEEEEE T ss_pred CCCCCCCCEECC--C--CEEEEEEEEEEEEEE-E---------CCCEEEEEC--CCEEEECCCCEEEEEECCCCCEEEEE T ss_conf 999937869799--8--679999974789999-4---------130299628--98899469984998979998599999 Q ss_pred E Q ss_conf 1 Q gi|254780919|r 129 V 129 (198) Q Consensus 129 ~ 129 (198) + T Consensus 99 v 99 (117) T 2b8m_A 99 V 99 (117) T ss_dssp E T ss_pred E T ss_conf 9 No 51 >1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A* Probab=87.90 E-value=0.42 Score=25.58 Aligned_cols=78 Identities=14% Similarity=0.079 Sum_probs=54.0 Q ss_pred CCCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHH--------HHEEEEEEECCCCCEEEECCCCCEEEEEE Q ss_conf 5200000001555554401210000222223433406421333--------10011366236530233302322034530 Q gi|254780919|r 48 FDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTY--------GCWVSLEISANNGLQIYIPTGFAHGFMTL 119 (198) Q Consensus 48 ~~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTf--------gk~~~~~Ls~~~~~~l~IP~G~aHGf~~L 119 (198) -++|-+++.||...- .++++|++|+...=+|+....+..- -+.+..+|++ +..+.||.|++..-.+- T Consensus 256 L~~gAm~~PHwn~nA---~~i~yV~~G~grvqvV~~~g~~~~~~~~~~~~~~~~~~~~l~~--G~v~vVPq~~pv~~~A~ 330 (416) T 1uij_A 256 INEGALLLPHFNSKA---IVILVINEGDANIELVGIKEQQQKQKQEEEPLEVQRYRAELSE--DDVFVIPAAYPFVVNAT 330 (416) T ss_dssp ECTTEEEEEEEESSC---EEEEEEEESEEEEEEEEEC------------CCEEEEEEEEET--TCEEEECTTCCEEEEES T ss_pred ECCCCCCCCCCCCCC---CEEEEEEECEEEEEEECCCCCCCHHHHCCCCCCCEEEEEEECC--CCEEEECCCCCEEEECC T ss_conf 538966178567887---5899997054799996688875202220256640788738879--88899999990778717 Q ss_pred CCCCEEEEEECC Q ss_conf 745338972178 Q gi|254780919|r 120 EMNTEVIYKVTD 131 (198) Q Consensus 120 ~d~~~i~Y~~~~ 131 (198) .+-.++.+-++ T Consensus 331 -~~~~~v~F~tn 341 (416) T 1uij_A 331 -SNLNFLAFGIN 341 (416) T ss_dssp -SSEEEEEEEET T ss_pred -CCEEEEEEEEC T ss_conf -98289999940 No 52 >3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, alternative splicing, mental retardation, metal-binding; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 2wwu_A* Probab=87.79 E-value=0.32 Score=26.29 Aligned_cols=81 Identities=15% Similarity=0.164 Sum_probs=48.5 Q ss_pred EEEEEEECCCCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHC--------------CCCHHH-----HHHEEEEEEEC Q ss_conf 34423312520000000155555440121000022222343340--------------642133-----31001136623 Q gi|254780919|r 40 VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDI--------------RRNSPT-----YGCWVSLEISA 100 (198) Q Consensus 40 ~Q~n~S~s~~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDl--------------R~~SpT-----fgk~~~~~Ls~ 100 (198) +|.+.-++ -+|+.-.+|..- .+..=...++.|+=...++-. ...+.. -.+...++|.+ T Consensus 147 v~~~~~mg-~~gs~T~~H~D~--~~t~~w~~~~~G~K~~~L~pP~~~~l~~y~~~~~~~~~~~~f~~~~~~~~~~v~L~p 223 (371) T 3k3o_A 147 VQKYCLMS-VRDSYTDFHIDF--GGTSVWYHVLKGEKIFYLIRPTNANLTLFECWSSSSNQNEMFFGDQVDKCYKCSVKQ 223 (371) T ss_dssp CSCEEEEE-CTTEEEEEECCG--GGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTSTTGGGSCGGGTSSCCEEEEEET T ss_pred CEEEEEEC-CCCCCCCEEECC--CCCCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHCCHHHCCCEEEEEECC T ss_conf 30489980-899999836889--998358999733699999688514623356666640354535055426439999899 Q ss_pred CCCCEEEECCCCCEEEEEECCCCEE Q ss_conf 6530233302322034530745338 Q gi|254780919|r 101 NNGLQIYIPTGFAHGFMTLEMNTEV 125 (198) Q Consensus 101 ~~~~~l~IP~G~aHGf~~L~d~~~i 125 (198) |..||||+|.+|...+++|...+ T Consensus 224 --Gd~LfIP~GW~HaV~t~~dsi~~ 246 (371) T 3k3o_A 224 --GQTLFIPTGWIHAVLTPVDCLAF 246 (371) T ss_dssp --TCEEEECTTCEEEEEEEEEEEEE T ss_pred --CCEEEECCCCEEEEECCCCEEEE T ss_conf --98899689964999758787998 No 53 >2yu1_A JMJC domain-containing histone demethylation protein 1A; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A Probab=87.72 E-value=0.34 Score=26.11 Aligned_cols=82 Identities=16% Similarity=0.105 Sum_probs=49.5 Q ss_pred EEEEEEECCCCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCC--------------CCHHH-----HHHEEEEEEEC Q ss_conf 344233125200000001555554401210000222223433406--------------42133-----31001136623 Q gi|254780919|r 40 VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIR--------------RNSPT-----YGCWVSLEISA 100 (198) Q Consensus 40 ~Q~n~S~s~~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR--------------~~SpT-----fgk~~~~~Ls~ 100 (198) +|-..-++ -+|+.-.+|.. +.+..=...++.|+=..+++-.. ..+.+ ..+...++|.+ T Consensus 196 v~~~~lmg-~~gS~T~fHiD--~~gTs~W~~vl~G~K~w~L~PPt~~nl~~y~~w~~s~~~~~~~~~d~~~~~~~~~l~p 272 (451) T 2yu1_A 196 VQKYCLMS-VRGCYTDFHVD--FGGTSVWYHIHQGGKVFWLIPPTAHNLELYENWLLSGSQGDIFLGDRVSDCQRIELKQ 272 (451) T ss_dssp CCCEEEEE-CTTCEEEEECC--GGGCEEEEEEEESCEEEEEECCCHHHHHHHHHHHHTTCCSSSCHHHHSSCCEEEEECT T ss_pred CEEEEEEC-CCCCCCCCEEC--CCCCEEEEEEEECCEEEEEECCCCCCHHHCCCCCCCCCHHHHHHCCCCCCEEEEEECC T ss_conf 23489981-69988870489--9887257788764479999689855510033334675336555101145349999869 Q ss_pred CCCCEEEECCCCCEEEEEECCCCEEE Q ss_conf 65302333023220345307453389 Q gi|254780919|r 101 NNGLQIYIPTGFAHGFMTLEMNTEVI 126 (198) Q Consensus 101 ~~~~~l~IP~G~aHGf~~L~d~~~i~ 126 (198) |..||||+|..|..++++|...+. T Consensus 273 --GdtlfIPsGW~HaV~tledsia~g 296 (451) T 2yu1_A 273 --GYTFVIPSGWIHAVYTPTDTLVFG 296 (451) T ss_dssp --TCEEEECTTCEEEEECSSCEEEEE T ss_pred --CCEEEECCCCEEEEECCCCEEEEE T ss_conf --977995799648997464568982 No 54 >2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense dcb-2} Probab=87.61 E-value=0.37 Score=25.96 Aligned_cols=63 Identities=10% Similarity=-0.001 Sum_probs=43.8 Q ss_pred CCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEEE Q ss_conf 20000000155555440121000022222343340642133310011366236530233302322034530745338972 Q gi|254780919|r 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYK 128 (198) Q Consensus 49 ~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~ 128 (198) .+|..-..|.+ + ...+++|++|++... ++ + ..+.|.+ +..++||+|.-|+..+.++...+... T Consensus 46 ~~G~~~~~H~h--~--~~~~~~vl~G~~~~~-~~--------~--~~~~l~~--Gd~i~ip~~~~H~~~a~~~~~~l~i~ 108 (114) T 2ozj_A 46 ADGESVSEEEY--F--GDTLYLILQGEAVIT-FD--------D--QKIDLVP--EDVLMVPAHKIHAIAGKGRFKMLQIT 108 (114) T ss_dssp ETTSSCCCBCC--S--SCEEEEEEEEEEEEE-ET--------T--EEEEECT--TCEEEECTTCCBEEEEEEEEEEEEEE T ss_pred CCCCCCCCCCC--C--CCEEEEEEECEEEEE-EC--------C--EEEECCC--CCEEEECCCCEEEEEECCCCEEEEEE T ss_conf 99996575329--9--868999991799999-99--------9--9998659--94999889996983979995899999 No 55 >3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, PSI-2, protein structure initiative; 2.31A {Bacteroides fragilis nctc 9343} Probab=87.51 E-value=0.39 Score=25.77 Aligned_cols=61 Identities=16% Similarity=0.168 Sum_probs=40.8 Q ss_pred CCCEEEE-CCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEE Q ss_conf 2000000-0155555440121000022222343340642133310011366236530233302322034530745338 Q gi|254780919|r 49 DCGTIRG-LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEV 125 (198) Q Consensus 49 ~kgvlRG-lH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i 125 (198) .+|.-.. +|.+.. +..+++|++|+....+ | |+ .+.|.+ +..+++|+|..|.+...++.... T Consensus 34 ~pG~~~p~~H~H~~---~~E~~~vl~G~~~~~v-~--------g~--~~~l~~--Gd~i~vp~g~~H~~~n~~d~~~~ 95 (125) T 3cew_A 34 PAGAGVPFVHSHKQ---NEEIYGILSGKGFITI-D--------GE--KIELQA--GDWLRIAPDGKRQISAASDSPIG 95 (125) T ss_dssp CTTCBCSSEEEESS---EEEEEEEEEEEEEEEE-T--------TE--EEEEET--TEEEEECTTCCEEEEEBTTBCEE T ss_pred CCCCCCCCCEECCC---CEEEEEEEECCEEEEE-C--------CE--EEEEEC--CEEEEECCCCCEEEEECCCCCEE T ss_conf 96997998889999---6299999959799999-9--------99--999338--86999899898999969999999 No 56 >3d82_A Cupin 2, conserved barrel domain protein; YP_752209.1, domain of unknown function with A cupin fold, structural genomics; 2.05A {Shewanella frigidimarina ncimb 400} Probab=87.44 E-value=0.28 Score=26.61 Aligned_cols=56 Identities=20% Similarity=0.265 Sum_probs=38.1 Q ss_pred EECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEE Q ss_conf 0001555554401210000222223433406421333100113662365302333023220345307453389 Q gi|254780919|r 54 RGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126 (198) Q Consensus 54 RGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~ 126 (198) ..+|++.. +..+++|++|++.. .+.. ..+.|.+ +..++||+|..|.+.+.++ +.++ T Consensus 42 ~~~H~H~~---~~E~~~vl~G~~~~---~~~~--------~~~~l~~--Gd~i~ip~g~~H~~~a~~~-~~iL 97 (102) T 3d82_A 42 FVWHEHAD---TDEVFIVMEGTLQI---AFRD--------QNITLQA--GEMYVIPKGVEHKPMAKEE-CKIM 97 (102) T ss_dssp CCCBCCTT---CCEEEEEEESEEEE---ECSS--------CEEEEET--TEEEEECTTCCBEEEEEEE-EEEE T ss_pred CCCEECCC---CEEEEEEEECEEEE---EECC--------EEEECCC--CCEEEECCCCCEEEECCCC-CEEE T ss_conf 69879999---75999999088999---9899--------9998779--9799989999592599999-6899 No 57 >2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal-kingston bacterial structural genomics initiative; 2.41A {Escherichia coli O157} SCOP: b.82.1.23 Probab=86.49 E-value=0.45 Score=25.46 Aligned_cols=65 Identities=18% Similarity=0.030 Sum_probs=46.9 Q ss_pred CCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEEE Q ss_conf 20000000155555440121000022222343340642133310011366236530233302322034530745338972 Q gi|254780919|r 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYK 128 (198) Q Consensus 49 ~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~ 128 (198) .+|-.+-.|.+. +.-+.+|+.|+....++|- ..+.+.+ +..+++|+|.+|++...+|+..+.+. T Consensus 108 ~PG~~~~~H~H~----~~~~~~vl~G~g~~t~v~g----------~~~~~~~--GD~~~~P~~~~H~~~n~gd~~~~~l~ 171 (354) T 2d40_A 108 MPGEVAPSHRHN----QSALRFIVEGKGAFTAVDG----------ERTPMNE--GDFILTPQWRWHDHGNPGDEPVIWLD 171 (354) T ss_dssp CTTCEEEEEEES----SCEEEEEEECSSCEEEETT----------EEEECCT--TCEEEECTTSCEEEECCSSSCEEEEE T ss_pred CCCCCCCHHHCC----HHHEEEEEECCEEEEEECC----------EEEEEEC--CCEEECCCCCEEEEEECCCCCEEEEE T ss_conf 899856022150----3114899988458998899----------9999848--99897389970785846999889999 Q ss_pred E Q ss_conf 1 Q gi|254780919|r 129 V 129 (198) Q Consensus 129 ~ 129 (198) + T Consensus 172 ~ 172 (354) T 2d40_A 172 G 172 (354) T ss_dssp E T ss_pred E T ss_conf 8 No 58 >1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 2.00A {Streptococcus pyogenes m1 gas} SCOP: b.82.1.9 Probab=86.15 E-value=0.57 Score=24.87 Aligned_cols=61 Identities=23% Similarity=0.407 Sum_probs=43.3 Q ss_pred CCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEE Q ss_conf 2000000015555544012100002222234334064213331001136623653023330232203453074533897 Q gi|254780919|r 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127 (198) Q Consensus 49 ~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y 127 (198) .+|.--..|.+ + ...+++|++|++... ++ ++ ...|.+ +..++||+|.-|++.+.++. .++. T Consensus 48 ~~G~~~~~H~h--~--~~~~~~vl~G~~~~~-~~--------~~--~~~l~~--Gd~~~vp~~~~H~i~a~~~~-~~l~ 108 (115) T 1yhf_A 48 DKGQEIGRHSS--P--GDAMVTILSGLAEIT-ID--------QE--TYRVAE--GQTIVMPAGIPHALYAVEAF-QMLL 108 (115) T ss_dssp CTTCEEEEECC--S--SEEEEEEEESEEEEE-ET--------TE--EEEEET--TCEEEECTTSCEEEEESSCE-EEEE T ss_pred CCCCCCCCEEC--C--CCEEEEEEEEEEEEE-EE--------EE--EEECCC--CCEEEECCCCEEEEEECCCC-EEEE T ss_conf 99981586899--9--866999997199999-98--------68--998159--96999899991986978993-9999 No 59 >3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI- cupin, double stranded beta helix; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A* Probab=86.11 E-value=1.7 Score=22.12 Aligned_cols=97 Identities=12% Similarity=0.062 Sum_probs=59.7 Q ss_pred CCEEEECCCEEEEEECHHHHHHCCCCCCEEEEEEEECCCCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHH Q ss_conf 76220379504211088989867998741344233125200000001555554401210000222223433406421333 Q gi|254780919|r 11 TRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTY 90 (198) Q Consensus 11 ~~~f~D~RG~f~e~f~~~~~~~~~~~~~~~Q~n~S~s~~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTf 90 (198) ++.-.+..|....++..+. + ++.+.. ..+|.-...|.+. . ..+++|++|++...+-| T Consensus 15 ~~~~~~~~gv~~~~~~~~~-------~---~v~~~~-l~PG~~~~~H~H~--~--~e~~~vl~G~~~~~i~~-------- 71 (243) T 3h7j_A 15 PKLIEWENGVRQYSTVRGD-------T---EVLMSY-VPPHTNVEPHQHK--E--VQIGMVVSGELMMTVGD-------- 71 (243) T ss_dssp CEEEECTTSCEEEEEEETT-------E---EEEEEE-ECTTEEEEEECCS--S--EEEEEEEESEEEEEETT-------- T ss_pred CCCCCCCCCEEEEEEECCC-------C---EEEEEE-ECCCCCCCCEECC--C--CEEEEEEECCEEEEECC-------- T ss_conf 6644347784899992799-------3---999999-9999866836778--8--68999988979999999-------- Q ss_pred HHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCC Q ss_conf 10011366236530233302322034530745338972178767 Q gi|254780919|r 91 GCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYS 134 (198) Q Consensus 91 gk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~~~~~y~ 134 (198) ....+.+ .+..++||+|..|++...++...+.+-...... T Consensus 72 ---~~~~~~~-~gd~~~iP~~~~H~~~N~~~~~~~~~~i~~~~~ 111 (243) T 3h7j_A 72 ---VTRKMTA-LESAYIAPPHVPHGARNDTDQEVIAIDIKRLKA 111 (243) T ss_dssp ---EEEEEET-TTCEEEECTTCCEEEEECSSSCEEEEEEEECCT T ss_pred ---EEEEECC-CCCEEECCCCCCEEEEECCCCEEEEEEEECCCC T ss_conf ---9999818-941898789995587866886189999972347 No 60 >3h8u_A Uncharacterized conserved protein with double- stranded beta-helix domain; YP_001338853.1, structural genomics; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp} Probab=85.18 E-value=0.84 Score=23.88 Aligned_cols=66 Identities=18% Similarity=0.119 Sum_probs=44.6 Q ss_pred CCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEEE Q ss_conf 20000000155555440121000022222343340642133310011366236530233302322034530745338972 Q gi|254780919|r 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYK 128 (198) Q Consensus 49 ~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~ 128 (198) ++|.--++|.+.. ..-+++|++|+....+-| |+ .+.|++ +..++||+|..|++...++...+... T Consensus 47 ~PG~~~~~H~H~~---~~e~~~vl~G~~~~~~~d--------g~--~~~l~~--Gd~~~ip~g~~H~~~N~g~e~~~~l~ 111 (125) T 3h8u_A 47 HPGQEIASHVHPH---GQDTWTVISGEAEYHQGN--------GI--VTHLKA--GDIAIAKPGQVHGAMNSGPEPFIFVS 111 (125) T ss_dssp CTTCEECCC-CTT---CEEEEEEEECEEEEECST--------TC--EEEEET--TEEEEECTTCCCEEEECSSSCEEEEE T ss_pred CCCCCCCCEECCC---CCEEEEEECCCEEEEECC--------CC--EEEECC--CCEEECCCCCEEEEEECCCCCEEEEE T ss_conf 9998984898899---877999985988999789--------64--578729--86895699999997989999999999 Q ss_pred E Q ss_conf 1 Q gi|254780919|r 129 V 129 (198) Q Consensus 129 ~ 129 (198) + T Consensus 112 i 112 (125) T 3h8u_A 112 V 112 (125) T ss_dssp E T ss_pred E T ss_conf 9 No 61 >1vj2_A Novel manganese-containing cupin TM1459; structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.65A {Thermotoga maritima} SCOP: b.82.1.10 Probab=84.05 E-value=1.8 Score=21.96 Aligned_cols=72 Identities=15% Similarity=0.251 Sum_probs=46.9 Q ss_pred CEEEEEEEECCCCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEE Q ss_conf 41344233125200000001555554401210000222223433406421333100113662365302333023220345 Q gi|254780919|r 38 VFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117 (198) Q Consensus 38 ~~~Q~n~S~s~~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~ 117 (198) .|....+.+ .+|.--.+|.+. . ..++++++|+.... ++ + ..+.|.+ +..+++|+|..|.+. T Consensus 47 ~f~~~~~~i--~PG~~~~~H~H~--~--~e~~~vl~G~~~~~-~~--------~--~~~~l~~--Gd~~~ip~~~~H~~~ 107 (126) T 1vj2_A 47 NFVMRLFTV--EPGGLIDRHSHP--W--EHEIFVLKGKLTVL-KE--------Q--GEETVEE--GFYIFVEPNEIHGFR 107 (126) T ss_dssp SEEEEEEEE--EEEEEEEEECCS--S--CEEEEEEESEEEEE-CS--------S--CEEEEET--TEEEEECTTCCEEEE T ss_pred CEEEEEEEE--CCCCCCCCEECC--C--CEEEEEEECEEEEE-EE--------E--EEEECCC--CEEEEECCCCEEEEE T ss_conf 559999999--999999678897--8--29999997916999-84--------6--4688369--809999999919989 Q ss_pred EECCCCEEEEEE Q ss_conf 307453389721 Q gi|254780919|r 118 TLEMNTEVIYKV 129 (198) Q Consensus 118 ~L~d~~~i~Y~~ 129 (198) ..++.. +.++| T Consensus 108 n~~~~~-~~~l~ 118 (126) T 1vj2_A 108 NDTDSE-VEFLC 118 (126) T ss_dssp CCSSSC-EEEEE T ss_pred ECCCCC-EEEEE T ss_conf 899999-99999 No 62 >1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protein structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11 Probab=83.90 E-value=1.3 Score=22.78 Aligned_cols=84 Identities=13% Similarity=0.140 Sum_probs=50.9 Q ss_pred CCCEEEEEEEECCCCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEE Q ss_conf 87413442331252000000015555544012100002222234334064213331001136623653023330232203 Q gi|254780919|r 36 QDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHG 115 (198) Q Consensus 36 ~~~~~Q~n~S~s~~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHG 115 (198) ...|.|-...+....+.-+..|- . .-..+++|++|++... +| |+ ...|.+ +..+|+|+|..|. T Consensus 65 ~~~f~~y~ve~~pgg~~~~p~~~--~--~~e~~~yVl~G~~~~~-~~--------g~--~~~l~~--Gd~~~~p~g~~h~ 127 (278) T 1sq4_A 65 AETFSQYIVELAPNGGSDKPEQD--P--NAEAVLFVVEGELSLT-LQ--------GQ--VHAMQP--GGYAFIPPGADYK 127 (278) T ss_dssp CCSCEEEEEEEEEEEEESSCCCC--T--TEEEEEEEEESCEEEE-ES--------SC--EEEECT--TEEEEECTTCCEE T ss_pred CCCEEEEEEEECCCCCCCCCCCC--C--CCEEEEEEEECEEEEE-EC--------CE--EEEEEC--CCEEEECCCCCEE T ss_conf 86519999999489726788888--8--7089999995989999-99--------99--999858--9999968999689 Q ss_pred EEEECCCCEEEEEECCCCCCH Q ss_conf 453074533897217876710 Q gi|254780919|r 116 FMTLEMNTEVIYKVTDFYSVE 136 (198) Q Consensus 116 f~~L~d~~~i~Y~~~~~y~p~ 136 (198) +...++.....+.....|.+. T Consensus 128 ~~n~~~~~~~~~~i~~~~~~~ 148 (278) T 1sq4_A 128 VRNTTGQHTRFHWIRKHYQKV 148 (278) T ss_dssp EECCSSSCEEEEEEEEECCCC T ss_pred EEECCCCCEEEEEEECCCCCC T ss_conf 897899988999997745677 No 63 >2ozi_A Hypothetical protein RPA4178; APC6210, putative protein RPA4178, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris CGA009} PDB: 3lag_A* Probab=83.63 E-value=0.67 Score=24.44 Aligned_cols=63 Identities=19% Similarity=0.209 Sum_probs=43.1 Q ss_pred CCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCE Q ss_conf 2000000015555544012100002222234334064213331001136623653023330232203453074533 Q gi|254780919|r 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124 (198) Q Consensus 49 ~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~ 124 (198) .+|.--|||.|..++ -.+.++.|+.....=| ++.....+.+ +.++++|+|..|+....+|... T Consensus 25 ~PG~~~~~H~H~~~~---~~~~v~~G~~~~~~~d--------~~~~~~~~~~--Gd~~~~p~g~~H~~~N~Gd~p~ 87 (98) T 2ozi_A 25 PPGSATGHHTHGMDY---VVVPMADGEMTIVAPD--------GTRSLAQLKT--GRSYARKAGVQHDVRNESTAEI 87 (98) T ss_dssp CTTEECCSEECCSCE---EEEESSCBC-CEECTT--------SCEECCCBCT--TCCEEECTTCEEEEEECSSSCE T ss_pred CCCCCCCCEECCCCE---EEEEEECCEEEEEECC--------CCEEEEEECC--CCEEEECCCCCEEEEECCCCEE T ss_conf 999886647189967---9999971399999899--------7247998608--9689989999487788999619 No 64 >2phd_A Gentisate 1,2-dioxygenase; beta-sandwich, oxidoreductase; 2.90A {Pseudaminobacter salicylatoxidans} SCOP: b.82.1.23 Probab=83.33 E-value=0.9 Score=23.71 Aligned_cols=65 Identities=15% Similarity=0.031 Sum_probs=45.9 Q ss_pred CCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEEE Q ss_conf 20000000155555440121000022222343340642133310011366236530233302322034530745338972 Q gi|254780919|r 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYK 128 (198) Q Consensus 49 ~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~ 128 (198) .+|-..-.|-+ .+..+.+|+.|+-...+||= ..+.+.+ +..+++|+|.+|++...+|+..+.+- T Consensus 111 ~PGe~~~~H~H----~~~~~~~vi~G~g~~t~v~g----------~~~~~~~--GD~~~~P~~~~H~h~n~gd~~~~~l~ 174 (368) T 2phd_A 111 GPRETAPEHRH----SQNAFRFVVEGEGVWTVVNG----------DPVRMSR--GDLLLTPGWCFHGHMNDTDQPMAWID 174 (368) T ss_dssp CTTCEEEEEEE----SSCEEEEEEECEEEEEEETT----------EEEEEET--TCEEEECTTCCEEEEECSSSCEEEEE T ss_pred CCCCCCCCCCC----CCCEEEEEEECCCEEEEECC----------EEEEEEC--CCEEEECCCCEEEEEECCCCCEEEEE T ss_conf 89985772537----61117999988708998899----------9988758--99897189970764887998789999 Q ss_pred E Q ss_conf 1 Q gi|254780919|r 129 V 129 (198) Q Consensus 129 ~ 129 (198) + T Consensus 175 ~ 175 (368) T 2phd_A 175 G 175 (368) T ss_dssp E T ss_pred E T ss_conf 2 No 65 >1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein structure initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11 Probab=82.49 E-value=2.5 Score=21.11 Aligned_cols=73 Identities=18% Similarity=0.186 Sum_probs=44.0 Q ss_pred CCCCEEEEEEEECCCCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCE Q ss_conf 98741344233125200000001555554401210000222223433406421333100113662365302333023220 Q gi|254780919|r 35 LQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAH 114 (198) Q Consensus 35 ~~~~~~Q~n~S~s~~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aH 114 (198) ....|.|....+. +|- +.| .. .-..+++|++|++-.. +| |+ ...|.+ +..+|+|+|..| T Consensus 46 ~~~~F~~~~v~~~--pG~--~~~--~~--~~E~~~~Vl~G~~~~~-~~--------g~--~~~l~~--G~~~~~P~g~~h 104 (246) T 1sfn_A 46 LGARFVQFTAEMP--AGA--QAT--ES--VYQRFAFVLSGEVDVA-VG--------GE--TRTLRE--YDYVYLPAGEKH 104 (246) T ss_dssp TCCSSEEEEEEEC--TTC--EEE--CC--SSEEEEEEEEEEEEEE-CS--------SC--EEEECT--TEEEEECTTCCC T ss_pred CCCCEEEEEEEEC--CCC--CCC--CC--CCCEEEEEEECEEEEE-EC--------CE--EEEEEC--CCEEEECCCCCE T ss_conf 8864699999979--999--898--88--8656899995989999-99--------99--999708--999996899958 Q ss_pred EEEEECCCCEEEEEE Q ss_conf 345307453389721 Q gi|254780919|r 115 GFMTLEMNTEVIYKV 129 (198) Q Consensus 115 Gf~~L~d~~~i~Y~~ 129 (198) ++..-++.. +.+.. T Consensus 105 ~~~n~~~~~-~~~~~ 118 (246) T 1sfn_A 105 MLTAKTDAR-VSVFE 118 (246) T ss_dssp EEEEEEEEE-EEEEE T ss_pred EEEECCCCE-EEEEE T ss_conf 999689960-99999 No 66 >1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 2.60A {Bacillus subtilis} SCOP: b.82.2.11 Probab=82.14 E-value=1 Score=23.34 Aligned_cols=77 Identities=17% Similarity=0.108 Sum_probs=45.6 Q ss_pred EEEEEEEECCCCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCH--------------------H--------HH Q ss_conf 1344233125200000001555554401210000222223433406421--------------------3--------33 Q gi|254780919|r 39 FVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNS--------------------P--------TY 90 (198) Q Consensus 39 ~~Q~n~S~s~~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~S--------------------p--------Tf 90 (198) ....+++++. .|+-=|+|+.. + .-++..+.|+=...+.+.+... + .. T Consensus 140 ~~~~~~~~~~-~g~g~~~H~D~--~--d~f~~Qv~G~K~W~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (342) T 1vrb_A 140 SSKAIVYAAK-NGGGFKAHFDA--Y--TNLIFQIQGEKTWKLAKNENVSNPMQHYDLSEAPYYPDDLQSYWKGDPPKEDL 214 (342) T ss_dssp CEEEEEEEEC-SSCCCCSEECS--S--EEEEEEEESCEEEEEECCSSCSSCSSCEECC----CCHHHHHHCCSCCCCTTC T ss_pred CCEEEEEECC-CCCCCCCEECC--C--CCEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHHC T ss_conf 4404899668-99801556878--4--54677652647899827744354656766333666623233442010613414 Q ss_pred HHEEEEEEECCCCCEEEECCCCCEEEEEECCC Q ss_conf 10011366236530233302322034530745 Q gi|254780919|r 91 GCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122 (198) Q Consensus 91 gk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~ 122 (198) ..+..++|.+ |.+||||+|.+|--.++++. T Consensus 215 ~~~~~~~l~p--GD~LyiP~g~~H~v~~~~~s 244 (342) T 1vrb_A 215 PDAEIVNLTP--GTMLYLPRGLWHSTKSDQAT 244 (342) T ss_dssp CSSEEEEECT--TCEEEECTTCEEEEECSSCE T ss_pred CCCEEEEECC--CCEEEECCCCCEEEEECCCC T ss_conf 7646999769--98899789970787757995 No 67 >2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha JMP134} Probab=81.91 E-value=0.98 Score=23.48 Aligned_cols=88 Identities=13% Similarity=0.083 Sum_probs=49.8 Q ss_pred CCCEEEEEECHHHHHHCCCCCCEEEEEEEECCCCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEE Q ss_conf 79504211088989867998741344233125200000001555554401210000222223433406421333100113 Q gi|254780919|r 17 SRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSL 96 (198) Q Consensus 17 ~RG~f~e~f~~~~~~~~~~~~~~~Q~n~S~s~~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~ 96 (198) ..+.|..++..+ .+..+.+ +|.. ..+=-+++|+. .+...+.+++|+....+ | +....+ T Consensus 18 ~~E~f~~L~~~~-------~~kVkrI-v~~~--~~~~~~~~yh~---~r~E~~~Vl~G~a~v~~-~--------~~~~~~ 75 (112) T 2opk_A 18 PDEIFQPLLERK-------GLKIERI-ISNG--QASPPGFWYDS---PQDEWVMVVSGSAGIEC-E--------GDTAPR 75 (112) T ss_dssp SSCEEEEEEEET-------TEEEEEE-EESS--CCCCTTCCBCC---SSEEEEEEEESCEEEEE-T--------TCSSCE T ss_pred CCEEEEEEECCC-------CEEEEEE-EECC--CCCCCCCCEEC---CCCCEEEEEECEEEEEE-E--------CCCEEE T ss_conf 861799987299-------9899999-9999--96995302107---85509999969899999-0--------460899 Q ss_pred EEECCCCCEEEECCCCCEEEEEECCCCEEEEE Q ss_conf 66236530233302322034530745338972 Q gi|254780919|r 97 EISANNGLQIYIPTGFAHGFMTLEMNTEVIYK 128 (198) Q Consensus 97 ~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~ 128 (198) .|++ +..++||+|..|-....+++...+.+ T Consensus 76 ~l~~--Gd~v~Ip~g~~HRv~nts~~p~tiwL 105 (112) T 2opk_A 76 VMRP--GDWLHVPAHCRHRVAWTDGGEPTVWL 105 (112) T ss_dssp EECT--TEEEEECTTCCEEEEEECSSSCEEEE T ss_pred EECC--CCEEEECCCCEEEEEECCCCCCEEEE T ss_conf 9369--99999899891974686999988999 No 68 >2f4p_A Hypothetical protein TM1010; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: UNL; 1.90A {Thermotoga maritima MSB8} SCOP: b.82.1.9 Probab=81.57 E-value=1.5 Score=22.40 Aligned_cols=66 Identities=17% Similarity=0.159 Sum_probs=43.5 Q ss_pred CCCCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEE Q ss_conf 25200000001555554401210000222223433406421333100113662365302333023220345307453389 Q gi|254780919|r 47 SFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126 (198) Q Consensus 47 s~~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~ 126 (198) +..+|.--++|.+ |.. .+++|++|+.+...- |+ ....|.+ +..++||+|+.|.+-+-.+.. +. T Consensus 54 tf~PGa~t~~H~H--~~~--q~~~Vl~G~g~~~~~---------g~-~~~~l~~--GD~v~iP~g~~H~hga~~~~~-m~ 116 (147) T 2f4p_A 54 VFEPGARTHWHSH--PGG--QILIVTRGKGFYQER---------GK-PARILKK--GDVVEIPPNVVHWHGAAPDEE-LV 116 (147) T ss_dssp EECTTCEECSEEC--TTC--EEEEEEEEEEEEEET---------TS-CCEEEET--TCEEEECTTCCEEEEEBTTBC-EE T ss_pred EECCCCCCCCEEC--CCC--EEEEEEECEEEEEEC---------CC-EEEEECC--CCEEEECCCCCCCCCCCCCCC-EE T ss_conf 9899986760099--997--699999587999971---------87-0699579--999996899824185589988-89 Q ss_pred EEE Q ss_conf 721 Q gi|254780919|r 127 YKV 129 (198) Q Consensus 127 Y~~ 129 (198) |.. T Consensus 117 ~ia 119 (147) T 2f4p_A 117 HIG 119 (147) T ss_dssp EEE T ss_pred EEE T ss_conf 999 No 69 >3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structure initiative; 1.85A {Rhodopseudomonas palustris tie-1} Probab=80.28 E-value=1.8 Score=22.04 Aligned_cols=64 Identities=17% Similarity=0.112 Sum_probs=43.0 Q ss_pred CCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEEE Q ss_conf 20000000155555440121000022222343340642133310011366236530233302322034530745338972 Q gi|254780919|r 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYK 128 (198) Q Consensus 49 ~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~ 128 (198) .+|.--.+|.+. ..-+++|++|+....+ | + ....|.+ +..++||+|..|++...+++....++ T Consensus 52 ~PG~~~~~H~H~----~~E~~~Vl~G~~~~~v-~--------~--~~~~l~~--Gd~i~ip~~~~H~~~N~g~epl~flc 114 (156) T 3kgz_A 52 DEGGYSTLERHA----HVHAVMIHRGHGQCLV-G--------E--TISDVAQ--GDLVFIPPMTWHQFRANRGDCLGFLC 114 (156) T ss_dssp EEEEECCCBBCS----SCEEEEEEEEEEEEEE-T--------T--EEEEEET--TCEEEECTTCCEEEECCSSSCEEEEE T ss_pred CCCCCCCCEECC----CCEEEEEEECEEEEEC-C--------C--EEEEECC--CCEEECCCCCEEEEEECCCCCEEEEE T ss_conf 999887753487----9389999949899967-9--------9--9999759--98898299994986989999999999 Q ss_pred E Q ss_conf 1 Q gi|254780919|r 129 V 129 (198) Q Consensus 129 ~ 129 (198) + T Consensus 115 i 115 (156) T 3kgz_A 115 V 115 (156) T ss_dssp E T ss_pred E T ss_conf 9 No 70 >3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum} Probab=79.99 E-value=0.99 Score=23.46 Aligned_cols=69 Identities=19% Similarity=0.236 Sum_probs=44.1 Q ss_pred CCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEEE Q ss_conf 20000000155555440121000022222343340642133310011366236530233302322034530745338972 Q gi|254780919|r 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYK 128 (198) Q Consensus 49 ~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~ 128 (198) .+|.- ++.+. +..-+++|++|++...+ | ++ .+.+. .+.+++||+|.-|+|.+-++...+.|. T Consensus 48 ~pG~~--~~~~~---~~dE~~~vleG~~~~~~-~--------~~--~~~~~--~Gd~~~ip~g~~h~~~~~~~~~~~~~v 109 (119) T 3lwc_A 48 APGQS--LTETM---AVDDVMIVLEGRLSVST-D--------GE--TVTAG--PGEIVYMPKGETVTIRSHEEGALTAYV 109 (119) T ss_dssp CTTCE--EEEEC---SSEEEEEEEEEEEEEEE-T--------TE--EEEEC--TTCEEEECTTCEEEEEEEEEEEEEEEE T ss_pred CCCCC--CCCCC---CCCEEEEEEEEEEEEEE-C--------CE--EEEEC--CCCEEEECCCCEEEEEECCCCEEEEEE T ss_conf 99983--67679---84579999998999999-9--------99--99967--981999899998999969977799999 Q ss_pred ECCCCCC Q ss_conf 1787671 Q gi|254780919|r 129 VTDFYSV 135 (198) Q Consensus 129 ~~~~y~p 135 (198) +.=.|.+ T Consensus 110 ~~P~w~~ 116 (119) T 3lwc_A 110 TYPHWRP 116 (119) T ss_dssp EECC--- T ss_pred ECCCCCC T ss_conf 9999722 No 71 >1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A Probab=79.52 E-value=0.42 Score=25.61 Aligned_cols=65 Identities=9% Similarity=0.021 Sum_probs=43.1 Q ss_pred CCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCC Q ss_conf 20000000155555440121000022222343340642133310011366236530233302322034530745 Q gi|254780919|r 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122 (198) Q Consensus 49 ~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~ 122 (198) +...+|...++...++.....+|+.|+.+ +++|.+ ++|..+.+ +.+-.|.||+|.-|.|-.-+++ T Consensus 84 ~~~~~~~kF~~EH~H~~dEvr~iv~G~g~---f~v~~~----~~~~~v~~--e~GDlI~vPag~~HwF~~~~~~ 148 (179) T 1zrr_A 84 QKEALREKFLNEHTHGEDEVRFFVEGAGL---FCLHIG----DEVFQVLC--EKNDLISVPAHTPHWFDMGSEP 148 (179) T ss_dssp HHHHHHHHHHSCBEESSCEEEEEEESCCC---CCEECS----SCEEEEEC--CCSCEEEECTTCCBCCCCSSCS T ss_pred CHHHHHHHHHHCCCCCCCEEEEEEECEEE---EEEECC----CEEEEEEE--CCCCEEEECCCCEEECCCCCCC T ss_conf 88999998632330887158999936099---998259----82899997--4799899599986803058988 No 72 >1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, target T1521, PSI, protein structure initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11 Probab=79.01 E-value=2.5 Score=21.18 Aligned_cols=81 Identities=19% Similarity=0.249 Sum_probs=48.3 Q ss_pred CEEEEEEEECCCCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEE Q ss_conf 41344233125200000001555554401210000222223433406421333100113662365302333023220345 Q gi|254780919|r 38 VFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFM 117 (198) Q Consensus 38 ~~~Q~n~S~s~~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~ 117 (198) .|.|-...+. +|--.+.+.+.. ....+++|++|++... +| |+ ...|.+ +..+|+|+|..|++. T Consensus 58 ~f~~~~~~i~--pgg~~~~~~~~~--~~e~~~~Vl~G~~~~~-~~--------g~--~~~l~~--Gd~~~~p~g~~h~~~ 120 (261) T 1rc6_A 58 SFVDYLVTLH--QNGGNQQGFGGE--GIETFLYVISGNITAK-AE--------GK--TFALSE--GGYLYCPPGSLMTFV 120 (261) T ss_dssp SSEEEEEEEE--EEEEESSCSCCT--TEEEEEEEEESEEEEE-ET--------TE--EEEEET--TEEEEECTTCCCEEE T ss_pred CEEEEEEEEC--CCCCCCCCCCCC--CCEEEEEEEECEEEEE-EC--------CE--EEEECC--CCEEEECCCCCEEEE T ss_conf 3699999997--897248878888--8289999995889999-99--------99--999748--989996799968999 Q ss_pred EECCCCEEEEEECCCCCC Q ss_conf 307453389721787671 Q gi|254780919|r 118 TLEMNTEVIYKVTDFYSV 135 (198) Q Consensus 118 ~L~d~~~i~Y~~~~~y~p 135 (198) ..++.....+.....|.+ T Consensus 121 N~~~~~a~~l~i~k~y~~ 138 (261) T 1rc6_A 121 NAQAEDSQIFLYKRRYVP 138 (261) T ss_dssp ECSSSCEEEEEEEEECCC T ss_pred ECCCCCEEEEEEEECCCC T ss_conf 899998899999945756 No 73 >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} Probab=78.52 E-value=0.35 Score=26.04 Aligned_cols=16 Identities=38% Similarity=0.457 Sum_probs=8.7 Q ss_pred HHHHCCCCHHHHHHEE Q ss_conf 4334064213331001 Q gi|254780919|r 79 IAVDIRRNSPTYGCWV 94 (198) Q Consensus 79 vvvDlR~~SpTfgk~~ 94 (198) ++||++++||||||.. T Consensus 46 atVDvdP~S~TYgqVI 61 (462) T 2ece_A 46 AVVDVNPKSETYSKIV 61 (462) T ss_dssp EEEECCTTSTTTTSEE T ss_pred EEEECCCCCCCCCEEE T ss_conf 9986899999824278 No 74 >3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, protein structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum atcc 11170} Probab=77.88 E-value=2.2 Score=21.51 Aligned_cols=63 Identities=17% Similarity=0.098 Sum_probs=42.4 Q ss_pred CCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEEE Q ss_conf 20000000155555440121000022222343340642133310011366236530233302322034530745338972 Q gi|254780919|r 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYK 128 (198) Q Consensus 49 ~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~ 128 (198) .+|.--.+|.+. ...+++|++|+.... +| |+ .+.|.+ +..++||+|..|++...+++. +.|+ T Consensus 61 ~PG~~~~~H~H~----~~e~~~Vl~G~g~~~-~~--------g~--~~~l~~--Gd~i~ip~~~~H~~~N~g~ep-l~fl 122 (166) T 3jzv_A 61 GPGGHSTLERHQ----HAHGVMILKGRGHAM-VG--------RA--VSAVAP--YDLVTIPGWSWHQFRAPADEA-LGFL 122 (166) T ss_dssp EEEEECCCBBCS----SCEEEEEEEECEEEE-ET--------TE--EEEECT--TCEEEECTTCCEEEECCTTSC-EEEE T ss_pred CCCCCCCCEECC----CCEEEEEEECCEEEE-EC--------CE--EEEECC--CCEEEECCCCCEEEEECCCCC-EEEE T ss_conf 999798767787----808999996936799-87--------57--789269--979998999939839899998-9999 Q ss_pred E Q ss_conf 1 Q gi|254780919|r 129 V 129 (198) Q Consensus 129 ~ 129 (198) | T Consensus 123 c 123 (166) T 3jzv_A 123 C 123 (166) T ss_dssp E T ss_pred E T ss_conf 9 No 75 >3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Probab=77.54 E-value=2.7 Score=20.92 Aligned_cols=83 Identities=14% Similarity=0.184 Sum_probs=48.7 Q ss_pred EEEEEEEECCCCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHH-------------C-CCCHHHH-----HHEEEEEEE Q ss_conf 13442331252000000015555544012100002222234334-------------0-6421333-----100113662 Q gi|254780919|r 39 FVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVD-------------I-RRNSPTY-----GCWVSLEIS 99 (198) Q Consensus 39 ~~Q~n~S~s~~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvD-------------l-R~~SpTf-----gk~~~~~Ls 99 (198) -+|-..-++ -+|+.--||..- .+..=...++.|+-..+++- . ...+..| .+...++|. T Consensus 265 ~v~~~~lmg-~~gs~T~fHiD~--~gts~w~~v~~G~K~w~liPPt~~nl~~y~~~~~~~~~~~~~~~~~~~~~~~v~l~ 341 (488) T 3kv5_D 265 FVQKYCLMG-VQDSYTDFHIDF--GGTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSVTQSEVFFGDKVDKCYKCVVK 341 (488) T ss_dssp CCSCEEEEE-CTTCEEEEECCG--GGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTCSSGGGSCGGGSSSCCEEEEEE T ss_pred CCEEEEEEC-CCCCCCCEEECC--CCCCCEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHCCCEEEEEEC T ss_conf 732589981-699898755888--88743688734647999978872454323566566653322211205643999988 Q ss_pred CCCCCEEEECCCCCEEEEEECCCCEEE Q ss_conf 365302333023220345307453389 Q gi|254780919|r 100 ANNGLQIYIPTGFAHGFMTLEMNTEVI 126 (198) Q Consensus 100 ~~~~~~l~IP~G~aHGf~~L~d~~~i~ 126 (198) + |..||||+|..|..++++|...+. T Consensus 342 p--Ge~l~iPsgW~HaV~t~edsi~i~ 366 (488) T 3kv5_D 342 Q--GHTLFVPTGWIHAVLTSQDCMAFG 366 (488) T ss_dssp T--TCEEEECTTCEEEEEEEEEEEEEE T ss_pred C--CCEEEECCCCEEEEECCCCEEEEE T ss_conf 9--978997899538997478758984 No 76 >3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor 2-oxoglutarate, asparaginyl hydroxylase,; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 1mze_A* 1mzf_A* 1iz3_A 3kcy_A* 3kcx_A* Probab=77.29 E-value=3.8 Score=20.12 Aligned_cols=76 Identities=16% Similarity=0.166 Sum_probs=45.0 Q ss_pred EEEEEEECCCCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCC---------------------------CHHHHH- Q ss_conf 3442331252000000015555544012100002222234334064---------------------------213331- Q gi|254780919|r 40 VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRR---------------------------NSPTYG- 91 (198) Q Consensus 40 ~Q~n~S~s~~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~---------------------------~SpTfg- 91 (198) .+.++-++ .+|+.-.+|+... .-++..+.|+=...++.... .=|.|. T Consensus 183 ~~~~lwiG-~~gt~t~lH~D~~----~n~~~qv~G~Kr~~L~pP~~~~~ly~~~~~~~~~~~s~vd~~~~d~~~~p~~~~ 257 (349) T 3d8c_A 183 TSNLLLIG-MEGNVTPAHYGEQ----QNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQN 257 (349) T ss_dssp EECEEEEE-CTTCEEEEECCSE----EEEEEEEESCEEEEEECGGGHHHHCBBCTTSTTBTBBCSCTTSCCTTTCGGGGG T ss_pred CCEEEEEE-CCCCCCCEEEECC----CCEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHH T ss_conf 61289980-8998863155044----654789962155797073236654656666766753101466647333836554 Q ss_pred -HEEEEEEECCCCCEEEECCCCCEEEEEECCC Q ss_conf -0011366236530233302322034530745 Q gi|254780919|r 92 -CWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122 (198) Q Consensus 92 -k~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~ 122 (198) +...++|.+ |.+||||+|.+|-..+|++. T Consensus 258 a~~~~~~l~p--Gd~LfiP~~wwH~V~sl~~~ 287 (349) T 3d8c_A 258 VVGYETVVGP--GDVLYIPMYWWHHIESLLNG 287 (349) T ss_dssp CCEEEEEECT--TCEEEECTTCEEEEEECTTS T ss_pred CCCCEEEECC--CCEEEECCCCCEEEEECCCC T ss_conf 9721899889--98898689986899985899 No 77 >3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Probab=76.49 E-value=1.9 Score=21.80 Aligned_cols=80 Identities=15% Similarity=0.211 Sum_probs=46.1 Q ss_pred EEEEEECCCCCEEEECCCCCCCCCHHHHEEECHHHHHHHHH--------------HCCCCHHH-HH----HEEEEEEECC Q ss_conf 44233125200000001555554401210000222223433--------------40642133-31----0011366236 Q gi|254780919|r 41 QDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAV--------------DIRRNSPT-YG----CWVSLEISAN 101 (198) Q Consensus 41 Q~n~S~s~~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvv--------------DlR~~SpT-fg----k~~~~~Ls~~ 101 (198) |-..-++ -+|..-.||..- .+..=..+++.|+=..+++ +....+.+ ++ +...++|.+ T Consensus 232 ~~~~~mg-~~gs~T~~HiD~--~gt~~w~~v~~G~K~w~l~pP~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p- 307 (447) T 3kv4_A 232 QKYCLMS-VRDSYTDFHIDF--GGTSVWYHVLKGEKIFYLIRPTNANLTLFECWSSSSNQNEMFFGDQVDKCYKCSVKQ- 307 (447) T ss_dssp SCEEEEE-CTTEEEEEECCG--GGCEEEEEEEESEEEEEEECCCHHHHHHHHHHHTCSSGGGSCGGGGSSCCEEEEEET- T ss_pred CCEEEEE-CCCCCCCEEECC--CCCEEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECC- T ss_conf 1179995-799877726889--987068998873079999588603600034555752012334355258569999889- Q ss_pred CCCEEEECCCCCEEEEEECCCCEE Q ss_conf 530233302322034530745338 Q gi|254780919|r 102 NGLQIYIPTGFAHGFMTLEMNTEV 125 (198) Q Consensus 102 ~~~~l~IP~G~aHGf~~L~d~~~i 125 (198) |..||||+|..|...+++|...+ T Consensus 308 -Ge~l~iP~gw~HaV~t~~dsi~~ 330 (447) T 3kv4_A 308 -GQTLFIPTGWIHAVLTPVDCLAF 330 (447) T ss_dssp -TCEEEECTTCEEEEEESSCEEEE T ss_pred -CCEEEECCCCEEEEECCCCEEEE T ss_conf -98899689953999857777898 No 78 >2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A Probab=76.18 E-value=4.1 Score=19.94 Aligned_cols=65 Identities=20% Similarity=0.131 Sum_probs=42.1 Q ss_pred CCCEEE--ECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEE Q ss_conf 200000--001555554401210000222223433406421333100113662365302333023220345307453389 Q gi|254780919|r 49 DCGTIR--GLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVI 126 (198) Q Consensus 49 ~kgvlR--GlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~ 126 (198) .+|--= ..|++.. +.-+++|++|++...+ | + ..+.|.+ +.+++||+|..|.+...+++.... T Consensus 29 ~PG~~~~~~~H~H~~---~~E~~~Vl~G~~~~~~-~--------g--~~~~l~~--Gd~~~ip~~~~H~~~N~g~~~~~~ 92 (113) T 2gu9_A 29 APGDREGGPDNRHRG---ADQWLFVVDGAGEAIV-D--------G--HTQALQA--GSLIAIERGQAHEIRNTGDTPLKT 92 (113) T ss_dssp CTTCEEECCCSSSCC---CEEEEEEEECCEEEEE-T--------T--EEEEECT--TEEEEECTTCCEEEECCSSSCEEE T ss_pred CCCCCCCCCCCCCCC---CCEEEEEEECCEEEEE-C--------C--EEEEECC--CCEEECCCCCEEEEEECCCCCEEE T ss_conf 999857887408899---7199999969399987-9--------9--8798059--962786998989989899999999 Q ss_pred EEE Q ss_conf 721 Q gi|254780919|r 127 YKV 129 (198) Q Consensus 127 Y~~ 129 (198) +.+ T Consensus 93 i~v 95 (113) T 2gu9_A 93 VNF 95 (113) T ss_dssp EEE T ss_pred EEE T ss_conf 999 No 79 >2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae} Probab=75.54 E-value=2.1 Score=21.53 Aligned_cols=52 Identities=12% Similarity=0.022 Sum_probs=38.5 Q ss_pred HHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEEEEC Q ss_conf 12100002222234334064213331001136623653023330232203453074533897217 Q gi|254780919|r 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVT 130 (198) Q Consensus 66 ~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~~~ 130 (198) ..+++|++|++...+=| ..+.|.+ +.++++|.|..|.|.-..+....++.+. T Consensus 111 ~e~~~Vl~G~l~v~l~~-----------~~~~L~~--GDs~~~~~~~~H~~~N~g~~~a~~~~V~ 162 (166) T 2vpv_A 111 YITFHVIQGIVEVTVCK-----------NKFLSVK--GSTFQIPAFNEYAIANRGNDEAKMFFVQ 162 (166) T ss_dssp EEEEEEEESEEEEEETT-----------EEEEEET--TCEEEECTTCEEEEEECSSSCEEEEEEE T ss_pred EEEEEEEEEEEEEEECC-----------EEEEECC--CCEEEECCCCEEEEEECCCCCEEEEEEE T ss_conf 89999997099999886-----------8999789--9899988989199897999969999999 No 80 >1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein structure initiative; 2.05A {Enterococcus faecalis V583} SCOP: b.82.1.11 Probab=74.85 E-value=2.8 Score=20.84 Aligned_cols=57 Identities=18% Similarity=0.163 Sum_probs=39.1 Q ss_pred HHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCC Q ss_conf 1210000222223433406421333100113662365302333023220345307453389721787671 Q gi|254780919|r 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135 (198) Q Consensus 66 ~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~~~~~y~p 135 (198) ..+++|++|++... +| |+ ...|.+ +..+|+|+|.+|.+..-++.....+..-..|.+ T Consensus 85 Ee~i~Vl~G~~~v~-~~--------g~--~~~L~~--Gd~~y~pag~~h~~~N~~~~~a~~~~i~k~y~~ 141 (274) T 1sef_A 85 QTLVYVIDGRLRVS-DG--------QE--THELEA--GGYAYFTPEMKMYLANAQEADTEVFLYKKRYQP 141 (274) T ss_dssp EEEEEEEESEEEEE-CS--------SC--EEEEET--TEEEEECTTSCCEEEESSSSCEEEEEEEEECCC T ss_pred EEEEEEEECEEEEE-EC--------CE--EEEECC--CCEEEECCCCCEEEEECCCCCEEEEEEEEEECC T ss_conf 79999995989999-99--------99--999789--999998899859999689998899999977314 No 81 >2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens} Probab=73.98 E-value=2.2 Score=21.51 Aligned_cols=76 Identities=14% Similarity=0.047 Sum_probs=44.8 Q ss_pred EEEEEEECCCCCEEE-ECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHH----------HHHEEEEEEECCCCCEEEE Q ss_conf 344233125200000-00155555440121000022222343340642133----------3100113662365302333 Q gi|254780919|r 40 VQDNHSFSFDCGTIR-GLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPT----------YGCWVSLEISANNGLQIYI 108 (198) Q Consensus 40 ~Q~n~S~s~~kgvlR-GlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpT----------fgk~~~~~Ls~~~~~~l~I 108 (198) +++|.-.+. +|.-- |.|+... .=++--+.|+=..-+++.+...+. +--...+.|.+ |-+||| T Consensus 139 ~~~n~y~t~-~~~~g~~~H~D~~----dvf~~Q~~G~K~W~l~~p~~~~~~~~~~~~~~~~~~p~~d~~Lep--GD~LYi 211 (442) T 2xdv_A 139 VGSNVYITP-AGSQGLPPHYDDV----EVFILQLEGEKHWRLYHPTVPLAREYSVEAEERIGRPVHEFMLKP--GDLLYF 211 (442) T ss_dssp CEEEEEEEC-TTCBCSCSEECSS----EEEEEEEESCEEEEEECCSSTTCSSCEECCTTTSCSCSEEEEECT--TCEEEE T ss_pred CCEEEEEEC-CCCCCCCCEECCH----HEEEEEECCCEEEEEECCCCCCCCCCCHHHHHCCCCCEEEEEECC--CCEEEE T ss_conf 304899967-9998775757770----108988428268999589875333465123423588438999738--988876 Q ss_pred CCCCCEEEEEECCC Q ss_conf 02322034530745 Q gi|254780919|r 109 PTGFAHGFMTLEMN 122 (198) Q Consensus 109 P~G~aHGf~~L~d~ 122 (198) |+|++|--.|+++. T Consensus 212 P~g~~H~~~~~~~~ 225 (442) T 2xdv_A 212 PRGTIHQADTPAGL 225 (442) T ss_dssp CTTCEEEEECCSSS T ss_pred CCCCEEEEECCCCC T ss_conf 79965862437887 No 82 >3n9n_A Putative uncharacterized protein; methylation, demethylase, PHD, JMJC, Fe(II) and ALP (alpha-ketoglutarate)-dependent dioxygenase family, oxidore; HET: M3L MLY OGA; 2.30A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* Probab=73.18 E-value=2.8 Score=20.88 Aligned_cols=78 Identities=15% Similarity=0.246 Sum_probs=47.7 Q ss_pred EEEEEEECCCCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHH-------------CCCCHH-HHH-----HEEEEEEEC Q ss_conf 3442331252000000015555544012100002222234334-------------064213-331-----001136623 Q gi|254780919|r 40 VQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVD-------------IRRNSP-TYG-----CWVSLEISA 100 (198) Q Consensus 40 ~Q~n~S~s~~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvD-------------lR~~Sp-Tfg-----k~~~~~Ls~ 100 (198) +|-..-++. +|..-.||..-. +..=..+++.|+-..+++- .-+.+. -|+ ++..++|.+ T Consensus 296 vqk~~lmg~-~gs~TdfHiD~~--gtsvw~~vl~G~K~f~l~PPt~~nl~~y~~w~~s~~~~~~f~~~~~~~~~~v~l~p 372 (528) T 3n9n_A 296 VEQFCLAGM-AGSYTDFHVDFG--GSSVYYHILKGEKIFYIAAPTEQNFAAYQAHETSPDTTTWFGDIANGAVKRVVIKE 372 (528) T ss_dssp CSSEEEEEC-TTEEEEEECCGG--GCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHHSCCCSCCGGGGTTTCCEEEEEET T ss_pred CCEEEEECC-CCCCCCEEECCC--CCEEEEECCCEEEEEEEECCCCCCHHHCCCCCCCCCHHHHCCCCCCCCEEEEEECC T ss_conf 503899756-888876058678--87200200446899999699974620202446873323332663513379999879 Q ss_pred CCCCEEEECCCCCEEEEEECCC Q ss_conf 6530233302322034530745 Q gi|254780919|r 101 NNGLQIYIPTGFAHGFMTLEMN 122 (198) Q Consensus 101 ~~~~~l~IP~G~aHGf~~L~d~ 122 (198) |..||||.|..|..++++|. T Consensus 373 --GetlfIPsGWiHaV~t~eDs 392 (528) T 3n9n_A 373 --GQTLLIPAGWIHAVLTPVDS 392 (528) T ss_dssp --TCEEEECTTCEEEEEEEEEE T ss_pred --CCEEEECCCCEEEEECCCCE T ss_conf --97899579954887632346 No 83 >2pyt_A Ethanolamine utilization protein EUTQ; 16421009, structural genomics, joint center for structural genomics, JCSG; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24 Probab=71.96 E-value=2.5 Score=21.20 Aligned_cols=52 Identities=19% Similarity=0.318 Sum_probs=36.7 Q ss_pred CHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEEEE Q ss_conf 401210000222223433406421333100113662365302333023220345307453389721 Q gi|254780919|r 64 AQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKV 129 (198) Q Consensus 64 ~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~~ 129 (198) +...+++|++|++...+ | |+ .+.|.+ +..+++|+|.-|.|.+-+ .+.++|.+ T Consensus 74 ~~~E~~~vl~G~~~~~~-~--------g~--~~~l~~--Gd~~~~p~g~~h~~~~~~-~~~~~~v~ 125 (133) T 2pyt_A 74 NYDEIDMVLEGELHVRH-E--------GE--TMIAKA--GDVMFIPKGSSIEFGTPT-SVRFLYVA 125 (133) T ss_dssp SSEEEEEEEEEEEEEEE-T--------TE--EEEEET--TCEEEECTTCEEEEEEEE-EEEEEEEE T ss_pred CCEEEEEEEEEEEEEEE-C--------CE--EEEECC--CCEEEECCCCEEEEEECC-CEEEEEEE T ss_conf 95199999999999998-9--------99--999639--999998999979998289-87999997 No 84 >2fqp_A Hypothetical protein BP2299; NP_880937.1, structural genomics, joint center for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I} Probab=70.23 E-value=3.6 Score=20.21 Aligned_cols=63 Identities=21% Similarity=0.305 Sum_probs=42.1 Q ss_pred CCCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCE Q ss_conf 52000000015555544012100002222234334064213331001136623653023330232203453074533 Q gi|254780919|r 48 FDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTE 124 (198) Q Consensus 48 ~~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~ 124 (198) ..+|---+||+|..+. -.++++.|+...-.-| + -....+.+ +..+++|+|..|.....++... T Consensus 25 i~PG~~~~~H~H~~~~---~~~~v~~G~~~v~~~~--------~-~~~~~~~~--G~~~~~p~g~~H~v~N~g~~~~ 87 (97) T 2fqp_A 25 FPPGGETGWHRHSMDY---VVVPMTTGPLLLETPE--------G-SVTSQLTR--GVSYTRPEGVEHNVINPSDTEF 87 (97) T ss_dssp ECTTCBCCSEECCSCE---EEEESSCEEEEEEETT--------E-EEEEEECT--TCCEEECTTCEEEEECCSSSCE T ss_pred ECCCCCCCCCCCCCCE---EEEEEECCEEEEEECC--------C-CEEEEECC--CEEEEEECCCCEEEEECCCCEE T ss_conf 9799904651987986---9999968767799917--------8-36899627--6799992999658288999719 No 85 >1vr3_A Acireductone dioxygenase; 13543033, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 2.06A {Mus musculus} SCOP: b.82.1.6 Probab=67.42 E-value=4.1 Score=19.92 Aligned_cols=74 Identities=20% Similarity=0.329 Sum_probs=47.1 Q ss_pred EEEEEECCCC----CEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEE Q ss_conf 4423312520----000000155555440121000022222343340642133310011366236530233302322034 Q gi|254780919|r 41 QDNHSFSFDC----GTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGF 116 (198) Q Consensus 41 Q~n~S~s~~k----gvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf 116 (198) .+-++++..+ ..++..-++..-++...+..|+.|+.+ +|+|.. -++|..+.+.+ +-.|.||+|.-|-| T Consensus 76 ~D~i~l~p~~~pn~e~~~~~F~~EH~H~ddEIr~vl~G~G~---F~vr~~---~~~~iri~~~~--GDlI~iPag~~HwF 147 (191) T 1vr3_A 76 MDIITICKDTLPNYEEKIKMFFEEHLHLDEEIRYILEGSGY---FDVRDK---EDKWIRISMEK--GDMITLPAGIYHRF 147 (191) T ss_dssp EEEEEESTTTSTTHHHHHHHHHSCEECSSCEEEEEEEEEEE---EEEECT---TSCEEEEEEET--TEEEEECTTCCEEE T ss_pred EEEEEECCCCCCCHHHHHHHHHCCEECCCCEEEEEEECCEE---EEEECC---CCCEEEEEEEC--CCEEEECCCCCEEC T ss_conf 57999898868898999998513403787459999978599---999889---98499999967--98999799982613 Q ss_pred EEECCC Q ss_conf 530745 Q gi|254780919|r 117 MTLEMN 122 (198) Q Consensus 117 ~~L~d~ 122 (198) -.-+++ T Consensus 148 tl~~~~ 153 (191) T 1vr3_A 148 TLDEKN 153 (191) T ss_dssp EECTTC T ss_pred CCCCCC T ss_conf 268888 No 86 >1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A* Probab=66.21 E-value=6.6 Score=18.73 Aligned_cols=85 Identities=11% Similarity=0.105 Sum_probs=54.5 Q ss_pred CCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEEE Q ss_conf 20000000155555440121000022222343340642133310011366236530233302322034530745338972 Q gi|254780919|r 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYK 128 (198) Q Consensus 49 ~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~ 128 (198) -+|.-|-+|.+.. .-..+.++|.+..-++| + |+...+.+.+ +.+.++|+|+.|.=+-.+.+|+=+ - T Consensus 43 GPN~R~D~H~~~~----eEwfYqlkG~~~l~v~~---~----g~~~~i~I~e--Gdv~llP~~vpHSPqR~~~~tiGl-V 108 (174) T 1yfu_A 43 GPNHRTDYHDDPL----EEFFYQLRGNAYLNLWV---D----GRRERADLKE--GDIFLLPPHVRHSPQRPEAGSACL-V 108 (174) T ss_dssp SCBCCCCEEECSS----CEEEEEEESCEEEEEEE---T----TEEEEEEECT--TCEEEECTTCCEEEEBCCTTCEEE-E T ss_pred CCCCCCCCCCCCC----HHEEEEECCEEEEEEEE---C----CCEEEEEECC--CCEEECCCCCCCCCCCCCCCCCEE-E T ss_conf 8886663302873----02236862459999993---8----9568867279--868971799877856666775117-8 Q ss_pred ECCCCCCHHCEECCCCCCC Q ss_conf 1787671017021688801 Q gi|254780919|r 129 VTDFYSVEHDSGVAWQDKS 147 (198) Q Consensus 129 ~~~~y~p~~e~~i~~~Dp~ 147 (198) +-..-.+...-+++|..+. T Consensus 109 iEr~R~~~~~D~l~WyC~~ 127 (174) T 1yfu_A 109 IERQRPAGMLDGFEWYCDA 127 (174) T ss_dssp EEECCCTTCCEEEEEECTT T ss_pred EEEECCCCCCCCEEEECCC T ss_conf 8863389873106997278 No 87 >3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV} Probab=64.52 E-value=4.8 Score=19.53 Aligned_cols=56 Identities=14% Similarity=0.063 Sum_probs=39.3 Q ss_pred CCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEEEECCC Q ss_conf 4401210000222223433406421333100113662365302333023220345307453389721787 Q gi|254780919|r 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDF 132 (198) Q Consensus 63 ~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~~~~~ 132 (198) ++..++++|+.|++-. + + -|+ .+.|.+ +.+++||.|..+++-+.+. +...|..... T Consensus 63 ~p~~E~~~VleG~~~l-----~--~--~g~--~~~~~~--Gd~~~ip~G~~~~~~~~~~-~~~~~~~~~~ 118 (238) T 3myx_A 63 YPYTEMLVMHRGSVTL-----T--S--GTD--SVTLST--GESAVIGRGTQVRIDAQPE-SLWAFCASTQ 118 (238) T ss_dssp CSSEEEEEEEESEEEE-----E--E--TTE--EEEEET--TCEEEECTTCCEEEEECTT-EEEEEEEECS T ss_pred CCCCEEEEEEEEEEEE-----E--E--CCE--EEEECC--CCEEEECCCCEEEEEECCC-EEEEEEEECC T ss_conf 6753899999778999-----9--7--997--999779--9889988997798862688-8999997057 No 88 >3kmh_A D-lyxose isomerase; cupin beta-barrel, structural genomics, montreal-kingston BA structural genomics initiative, BSGI; 1.58A {Escherichia coli O157} PDB: 3mpb_A* Probab=63.87 E-value=3.7 Score=20.20 Aligned_cols=68 Identities=16% Similarity=0.162 Sum_probs=42.4 Q ss_pred CCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCC----------------CHHHHHHEEEEEEECCCCCEEEECCCC Q ss_conf 2000000015555544012100002222234334064----------------213331001136623653023330232 Q gi|254780919|r 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRR----------------NSPTYGCWVSLEISANNGLQIYIPTGF 112 (198) Q Consensus 49 ~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~----------------~SpTfgk~~~~~Ls~~~~~~l~IP~G~ 112 (198) ++|-.-=|||+...- -=+.|..|..+.+.+.... ...||.-...+.|.+ +.++.|+||. T Consensus 114 ~~gQ~~P~H~H~~K~---EtiinrgG~~lvi~l~~~~~~~~~~~~~v~V~~DG~~~~~~~G~~l~L~P--GesiTI~Pg~ 188 (246) T 3kmh_A 114 RDAQVTPMHFHWRKR---EDIINRGGGNLIVELWNADSNEQTADSDITVVIDGCRQKHTAGSQLRLSP--GESICLPPGL 188 (246) T ss_dssp CBTCEEEEEEESSCC---EEEEEEEESCEEEEEEEBCTTSSBCCSCEEEEETTEEEEECTTCEEEECT--TCEEEECTTE T ss_pred CCCCCCCCEECCCCE---EEEEECCCCEEEEEEECCCCCCCCCCCCEEEECCCEEEEECCCCEEEECC--CCEEECCCCC T ss_conf 389967723478740---47997578448999814687665345644782199698867997798789--9969807998 Q ss_pred CEEEEEECC Q ss_conf 203453074 Q gi|254780919|r 113 AHGFMTLEM 121 (198) Q Consensus 113 aHGf~~L~d 121 (198) .|.|.+.+. T Consensus 189 ~H~F~a~~G 197 (246) T 3kmh_A 189 YHSFWAEAG 197 (246) T ss_dssp EEEEEECTT T ss_pred EEEEEECCC T ss_conf 078895489 No 89 >3bal_A Acetylacetone-cleaving enzyme; jelly roll, tetramer, dioxygenase, iron, metal-binding, oxidoreductase; 1.95A {Acinetobacter johnsonii} Probab=61.31 E-value=6.9 Score=18.62 Aligned_cols=69 Identities=12% Similarity=0.058 Sum_probs=46.0 Q ss_pred CCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEEE Q ss_conf 20000000155555440121000022222343340642133310011366236530233302322034530745338972 Q gi|254780919|r 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYK 128 (198) Q Consensus 49 ~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~ 128 (198) .+|.....|.+..+ -.++|++|+...-.-| ...+. .+. -+.-++.|+|-.|...+..+++++++. T Consensus 54 ~~G~~~p~H~H~~~----~~~~Vl~G~~~~~~g~-----~~~~~----~~~--~G~y~~~Pag~~H~~~~~~e~t~~l~~ 118 (153) T 3bal_A 54 PAGSSFASHIHAGP----GEYFLTKGKMEVRGGE-----QEGGS----TAY--APSYGFESSGALHGKTFFPVESQFYMT 118 (153) T ss_dssp CTTEEECCEEESSC----EEEEEEESEEEETTCG-----GGTSE----EEE--SSEEEEECTTCEESCCEESSCEEEEEE T ss_pred CCCCCCCCCEECCC----EEEEEEEEEEEECCCC-----CCCCE----EEE--CCCEEEECCCCEECCCCCCCCEEEEEE T ss_conf 99989887511117----7999994699961587-----57872----883--784898679982754328977499999 Q ss_pred ECCC Q ss_conf 1787 Q gi|254780919|r 129 VTDF 132 (198) Q Consensus 129 ~~~~ 132 (198) +.+. T Consensus 119 ~~Gp 122 (153) T 3bal_A 119 FLGP 122 (153) T ss_dssp EESC T ss_pred EECC T ss_conf 9678 No 90 >3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.30A {Ruegeria pomeroyi dss-3} Probab=56.55 E-value=7.6 Score=18.38 Aligned_cols=66 Identities=18% Similarity=0.232 Sum_probs=41.2 Q ss_pred CCCEEEE-CCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCC--CEEEEEECCCCEE Q ss_conf 2000000-015555544012100002222234334064213331001136623653023330232--2034530745338 Q gi|254780919|r 49 DCGTIRG-LHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGF--AHGFMTLEMNTEV 125 (198) Q Consensus 49 ~kgvlRG-lH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~--aHGf~~L~d~~~i 125 (198) .+|---+ .|++. .+..+++|++|++... ++ ++ .+.|.+ +.+++||+|. +|.+...++.... T Consensus 51 ~PG~~~~~~H~H~---~~eE~~~Vl~G~~~~~-~~--------~~--~~~l~~--Gd~~~ip~g~~~~H~~~N~gde~~~ 114 (163) T 3i7d_A 51 EPGAKSSLRHYHM---EQDEFVMVTEGALVLV-DD--------QG--EHPMVP--GDCAAFPAGDPNGHQFVNRTDAPAT 114 (163) T ss_dssp CTTCBSSSSEEES---SCCEEEEEEESCEEEE-ET--------TE--EEEECT--TCEEEECTTCCCCBEEECCSSSCEE T ss_pred CCCCCCCCCEECC---CCEEEEEEEECCEEEE-EC--------CE--EEECCC--CCEEEEECCCCCCEEEECCCCCCEE T ss_conf 9197988760889---9639999997929999-89--------98--998369--9589995989846798808999899 Q ss_pred EEEEC Q ss_conf 97217 Q gi|254780919|r 126 IYKVT 130 (198) Q Consensus 126 ~Y~~~ 130 (198) ...++ T Consensus 115 ~L~V~ 119 (163) T 3i7d_A 115 FLVVG 119 (163) T ss_dssp EEEEE T ss_pred EEEEE T ss_conf 99998 No 91 >1xe7_A YML079WP, hypothetical 22.5 kDa protein in TUB1-CPR3 intergenic region; jelly roll motif, cupin superfamily, structural genomics; HET: GUN; 1.75A {Saccharomyces cerevisiae} SCOP: b.82.1.16 PDB: 1xe8_A* Probab=56.39 E-value=9.1 Score=17.91 Aligned_cols=113 Identities=15% Similarity=0.060 Sum_probs=58.6 Q ss_pred ECCEEEECCCEEEEEECHHHHHHCC-C------------CCCEEEEEEEECCCCCEEEECCCCCCCCCHHHHEEECHHHH Q ss_conf 0762203795042110889898679-9------------87413442331252000000015555544012100002222 Q gi|254780919|r 10 KTRKFEDSRGWFSQTYSSKLLKELG-L------------QDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRI 76 (198) Q Consensus 10 ~~~~f~D~RG~f~e~f~~~~~~~~~-~------------~~~~~Q~n~S~s~~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I 76 (198) ++..|. +-|+|.|+|++...-... . .....-+.+-++ ..+-+=.||- ... +-+..-..|.. T Consensus 38 ~L~pHP-EGG~frEt~RS~~~~~~~~~~~~~~~~~~~~~R~~~TsIYyLLt-~~~~~S~~Hr--i~s--dEiw~~~~G~~ 111 (203) T 1xe7_A 38 QLIKHR-EGGYFKETDRSPYTMEVEKPVNGGSGNTEMVTRNQSTLIYYLLT-PDSPIGKFHK--NIN--RIIHILQRGKG 111 (203) T ss_dssp TCEECT-TSSEEEEEEECSCEEEECCCC--------CEEEESCEEEEEEEB-TTBCEEEEEE--ESS--CEEEEEEEECE T ss_pred CCCCCC-CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEC-CCCCCCCEEE--CCC--CEEEEEECCCC T ss_conf 996289-98458988987672356555545566667786455317999983-7998761247--487--76999946996 Q ss_pred HHHHHHCCCCHHHHHHEEEEEEECC----CCCEEEECCCCCEEEEEECCC-----CEEEEEECCCCC Q ss_conf 2343340642133310011366236----530233302322034530745-----338972178767 Q gi|254780919|r 77 FDIAVDIRRNSPTYGCWVSLEISAN----NGLQIYIPTGFAHGFMTLEMN-----TEVIYKVTDFYS 134 (198) Q Consensus 77 ~dvvvDlR~~SpTfgk~~~~~Ls~~----~~~~l~IP~G~aHGf~~L~d~-----~~i~Y~~~~~y~ 134 (198) ..++++ ++ |++..+.|+.+ ..-++.||+|++-|-..+.++ +.|...|.=-|+ T Consensus 112 l~~~i~--~d----G~~~~~~LG~d~~~Ge~~Q~vVP~G~W~aA~~~~~~s~g~ysLvsCtVaPGFd 172 (203) T 1xe7_A 112 QYVLVY--PD----GQVKSFKVGFDYKNGEVSQWVVPGGVFKASFLLPNEEFDNGFLISEVVVPGFD 172 (203) T ss_dssp EEEEEC--TT----SCEEEEEESSCGGGTCBSEEEECTTCEEEEEECCCTTTTTCEEEEEEESSCCC T ss_pred EEEEEC--CC----CCEEEEEECCCCCCCCEEEEEECCCEEEEEEECCCCCCCCEEEEEEEECCCCC T ss_conf 699975--99----98699984688666854799957997998566588875545899856548815 No 92 >1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15 Probab=55.36 E-value=9.5 Score=17.82 Aligned_cols=49 Identities=14% Similarity=0.162 Sum_probs=35.2 Q ss_pred HHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEE Q ss_conf 12100002222234334064213331001136623653023330232203453074533897 Q gi|254780919|r 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIY 127 (198) Q Consensus 66 ~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y 127 (198) ..+++|++|++-..+ + -..+.|.+ +.++++|.+..|+|...++.+.++- T Consensus 127 ~E~~~Vl~G~l~v~~-~----------~~~~~L~~--GDsi~f~~~~pH~~~n~~~~~~~~l 175 (192) T 1y9q_A 127 IEYIHVLEGIMKVFF-D----------EQWHELQQ--GEHIRFFSDQPHGYAAVTEKAVFQN 175 (192) T ss_dssp EEEEEEEESCEEEEE-T----------TEEEEECT--TCEEEEECSSSEEEEESSSCEEEEE T ss_pred EEEEEEEEEEEEEEE-C----------CEEEEECC--CCEEEECCCCCEEEEECCCCCEEEE T ss_conf 799999987999999-9----------99999789--9789984999889796898879999 No 93 >1znp_A Hypothetical protein ATU3615; X-RAY, NESG, ATR55, Q8U9W0, structural genomics, PSI, protein structure initiative; 2.50A {Agrobacterium tumefaciens str} SCOP: b.82.1.16 Probab=54.13 E-value=11 Score=17.36 Aligned_cols=112 Identities=13% Similarity=0.071 Sum_probs=63.0 Q ss_pred ECCEEEECCCEEEEEECHHHHHHCCCCCCEEEEEEEECCCCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHH Q ss_conf 07622037950421108898986799874134423312520000000155555440121000022222343340642133 Q gi|254780919|r 10 KTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPT 89 (198) Q Consensus 10 ~~~~f~D~RG~f~e~f~~~~~~~~~~~~~~~Q~n~S~s~~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpT 89 (198) ++..|. +-|+|.|+|+++. .+......-+.+-++ ++..=.||--+. . .-++.-..|.-+.+.+ +.. T Consensus 15 ~L~pHp-EGG~fretyRs~~---~~~R~~~TsIYyLL~--~~~~S~~Hrl~~-s--dEiw~~~~G~pl~l~~-~~~---- 80 (154) T 1znp_A 15 GLEPHP-EGGFYHQTFRDKA---GGERGHSTAIYYLLE--KGVRSHWHRVTD-A--VEVWHYYAGAPIALHL-SQD---- 80 (154) T ss_dssp TCEECT-TSSEEEEEEECSS---STTTCSCEEEEEEEE--SSCCEEEEEETT-S--CEEEEEEEESCEEEEE-ESS---- T ss_pred CCCCCC-CCCEEEEEEECCC---CCCCCCEEEEEEECC--CCCCCCCEECCC-C--CEEEEECCCCCEEEEE-ECC---- T ss_conf 996289-9736998987899---998766179999847--999773022179-8--7799984898479999-669---- Q ss_pred HHHEEEEEEECC----CCCEEEECCCCCEEEEEECCCCEEEEEECCCCCC Q ss_conf 310011366236----5302333023220345307453389721787671 Q gi|254780919|r 90 YGCWVSLEISAN----NGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSV 135 (198) Q Consensus 90 fgk~~~~~Ls~~----~~~~l~IP~G~aHGf~~L~d~~~i~Y~~~~~y~p 135 (198) -|....+.|.++ ..-++.||+|++.|-.++.+-+.+...|.=-|.. T Consensus 81 ~g~~~~~~LG~d~~~Ge~~Q~vVP~G~W~aa~~~g~~sLvsctVaPGF~f 130 (154) T 1znp_A 81 GREVQTFTLGPAILEGERPQVIVPANCWQSAESLGDFTLVGCTVSPGFAF 130 (154) T ss_dssp SSCCEEEEESSCTTTTEESEEEECTTCEEEEEESSSEEEEEEEESSCCCG T ss_pred CCCEEEEEECCCCCCCCEEEEEECCCEEEEEEECCCEEEEEEEECCCCCC T ss_conf 99679999678865686459997699699656999949999675398967 No 94 >3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural genomics, joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans} Probab=50.74 E-value=13 Score=17.04 Aligned_cols=67 Identities=16% Similarity=0.166 Sum_probs=40.4 Q ss_pred CCCEE-EECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEEC-CCCCEEEEEECCCCEEE Q ss_conf 20000-00015555544012100002222234334064213331001136623653023330-23220345307453389 Q gi|254780919|r 49 DCGTI-RGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIP-TGFAHGFMTLEMNTEVI 126 (198) Q Consensus 49 ~kgvl-RGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP-~G~aHGf~~L~d~~~i~ 126 (198) .+|.- -..|.+. .+..+++|++|+....+ | ++ .+.|.+ +.+++|| .|..|++...++..... T Consensus 54 ~PG~~s~~~H~h~---~~eE~~~Vl~G~~~~~~-~--------g~--~~~l~~--GD~v~i~~~~~~H~~~N~g~e~~~~ 117 (162) T 3l2h_A 54 EPGKESTEYHLHH---YEEEAVYVLSGKGTLTM-E--------ND--QYPIAP--GDFVGFPCHAAAHSISNDGTETLVC 117 (162) T ss_dssp CTTCBSSSSBEES---SCCEEEEEEESCEEEEE-T--------TE--EEEECT--TCEEEECTTSCCEEEECCSSSCEEE T ss_pred CCCCCCCCCCCCC---CCEEEEEEEECEEEEEE-C--------CE--EEEECC--CCEEEECCCCCEEEEEECCCCCEEE T ss_conf 9979978361848---97499999918699999-9--------99--999759--9789988898669848089789999 Q ss_pred EEECC Q ss_conf 72178 Q gi|254780919|r 127 YKVTD 131 (198) Q Consensus 127 Y~~~~ 131 (198) ..++. T Consensus 118 L~V~t 122 (162) T 3l2h_A 118 LVIGQ 122 (162) T ss_dssp EEEEE T ss_pred EEEEC T ss_conf 99988 No 95 >1dgw_X Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices, merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_X Probab=49.53 E-value=5.3 Score=19.30 Aligned_cols=66 Identities=12% Similarity=0.149 Sum_probs=42.4 Q ss_pred CEEEECCCEEEEEECHHHHHHC-CCCCCEEEEEEEECCCCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCC Q ss_conf 6220379504211088989867-9987413442331252000000015555544012100002222234334064 Q gi|254780919|r 12 RKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRR 85 (198) Q Consensus 12 ~~f~D~RG~f~e~f~~~~~~~~-~~~~~~~Q~n~S~s~~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~ 85 (198) ..|...-|.+.+. +.+.|..+ ++.....-.+ + .+|-++..|++..- +++++|++|+...-+|+.+. T Consensus 11 P~~sn~~G~~~~~-~~~~fP~L~~l~is~~~~~--l--~~g~m~~PHwh~~A---~ei~~v~~G~~~v~~v~~~~ 77 (79) T 1dgw_X 11 PIYSNNYGKLYEI-TPEKNSQLRDLDILLNCLQ--M--NEGALFVPHYNSRA---TVILVANEGRAEVELVGLEQ 77 (79) T ss_dssp CSEECSSEEEEEE-CTTTCHHHHTTTEEEEEEE--E--CTTCEEEEEEESSC---EEEEEEEESCEEEEEEEEC- T ss_pred CCCCCCCCEEEEE-CHHHCCCCCCCCEEEEEEE--E--CCCCEECCCCCCCC---CEEEEEEECEEEEEEECCCC T ss_conf 9618899769997-9677916143862789988--5--58968066257998---69999992718999981688 No 96 >3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1, protein with A cupin-like fold and unknown function; HET: MSE; 1.91A {Novosphingobium aromaticivorans DSM12444} Probab=48.00 E-value=12 Score=17.21 Aligned_cols=63 Identities=16% Similarity=0.132 Sum_probs=40.9 Q ss_pred CCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCC-CEEEE Q ss_conf 20000000155555440121000022222343340642133310011366236530233302322034530745-33897 Q gi|254780919|r 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN-TEVIY 127 (198) Q Consensus 49 ~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~-~~i~Y 127 (198) .+|.--+||-+. ...+++|++|+|..++-| |+ .+.|.+ +. ++|++|-.|++.-.++. +.+++ T Consensus 87 ~Pg~~~~~Hrh~----t~d~~~Vl~Gei~l~ld~--------ge--~~~l~~--GD-~~v~~g~~H~w~N~~d~pa~~l~ 149 (172) T 3es1_A 87 LPGKESPMHRTN----SIDYGIVLEGEIELELDD--------GA--KRTVRQ--GG-IIVQRGTNHLWRNTTDKPCRIAF 149 (172) T ss_dssp CTTCBCCCBCCS----EEEEEEEEESCEEEECGG--------GC--EEEECT--TC-EEEECSCCBEEECCSSSCEEEEE T ss_pred CCCCCCCCCCCC----CEEEEEEEEEEEEEEECC--------CC--EEEECC--CC-EEEECCCEEEEEECCCCCEEEEE T ss_conf 979988773089----761899999799999856--------76--578789--99-88779980886989999899999 Q ss_pred E Q ss_conf 2 Q gi|254780919|r 128 K 128 (198) Q Consensus 128 ~ 128 (198) . T Consensus 150 v 150 (172) T 3es1_A 150 I 150 (172) T ss_dssp E T ss_pred E T ss_conf 9 No 97 >1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose 6-phosphate, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.82.1.3 Probab=41.77 E-value=18 Score=16.22 Aligned_cols=21 Identities=29% Similarity=0.600 Sum_probs=16.3 Q ss_pred EEEEECCCCCEEEECCCCCEEEE Q ss_conf 13662365302333023220345 Q gi|254780919|r 95 SLEISANNGLQIYIPTGFAHGFM 117 (198) Q Consensus 95 ~~~Ls~~~~~~l~IP~G~aHGf~ 117 (198) .+.+ +.+.++|||+|.-|+|. T Consensus 159 ~~~v--~~Gd~~~ipaGt~HA~~ 179 (319) T 1qwr_A 159 RIKI--KPGDFYYVPSGTLHALC 179 (319) T ss_dssp EEEC--CTTCEEEECTTCCEEEC T ss_pred EEEC--CCCCEEEECCCCEEEEC T ss_conf 9981--46998996699676866 No 98 >1pmi_A PMI, phosphomannose isomerase; aldose-ketose isomerase; 1.70A {Candida albicans} SCOP: b.82.1.3 Probab=37.28 E-value=21 Score=15.81 Aligned_cols=40 Identities=15% Similarity=0.234 Sum_probs=26.1 Q ss_pred EEEEEECCCCCEEEECCCCCEEEEE--------ECCCCEEEEEECCCCCC Q ss_conf 1136623653023330232203453--------07453389721787671 Q gi|254780919|r 94 VSLEISANNGLQIYIPTGFAHGFMT--------LEMNTEVIYKVTDFYSV 135 (198) Q Consensus 94 ~~~~Ls~~~~~~l~IP~G~aHGf~~--------L~d~~~i~Y~~~~~y~p 135 (198) ..+.| +.+.++|||+|.-|+|.. -|||++=.|++..+-+. T Consensus 266 n~v~l--~pGdaifvpaG~~HAyl~G~~vEima~SDnV~R~glt~K~~Dv 313 (440) T 1pmi_A 266 NHVGL--NKGEAMFLQAKDPHAYISGDIIECMAASDNVVRAGFTPKFKDV 313 (440) T ss_dssp EEEEE--CTTCEEEECTTCCEEEEEEEEEEEEESCCCCEEEESCSSCCCH T ss_pred EEEEC--CCCCEEECCCCCCEEECCCCEEEEECCCCCEEEECCCCCCCCH T ss_conf 06635--8898797789975287479746876168858970366665788 No 99 >2wfp_A Mannose-6-phosphate isomerase; zinc, cytoplasm, APO-structure, metal-binding; 1.67A {Salmonella typhimurium} PDB: 3h1w_A 3h1m_A 3h1y_A* Probab=36.78 E-value=18 Score=16.17 Aligned_cols=39 Identities=10% Similarity=0.216 Sum_probs=23.9 Q ss_pred EEEEECCCCCEEEECCCCCEEEEE--------ECCCCEEEEEECCCCCC Q ss_conf 136623653023330232203453--------07453389721787671 Q gi|254780919|r 95 SLEISANNGLQIYIPTGFAHGFMT--------LEMNTEVIYKVTDFYSV 135 (198) Q Consensus 95 ~~~Ls~~~~~~l~IP~G~aHGf~~--------L~d~~~i~Y~~~~~y~p 135 (198) .+.| +.+.++|||+|.-|+|.. -+|++.=.|.+..+-+. T Consensus 241 ~v~l--~~Gd~~fipaG~~HAy~~G~~vEim~~SDnv~R~g~t~k~~d~ 287 (394) T 2wfp_A 241 VVKL--NPGEAMFLFAETPHAYLQGVALEVMANSDNVLRAGLTPKYIDI 287 (394) T ss_dssp EEEE--CTTCEEEECTTCCEEEEEEEEEEEECSSCBCEECSSCSSCCCH T ss_pred EEEC--CCCCEEECCCCCCCEECCCCEEEEECCCCCEEECCCCCCCCCH T ss_conf 8961--7998797279985284368469986278837854677653446 No 100 >3cjx_A Protein of unknown function with A cupin-like fold; YP_298765.1, protein with A cupin-like fold and unknown function; HET: MSE; 2.60A {Ralstonia eutropha JMP134} Probab=27.21 E-value=32 Score=14.82 Aligned_cols=64 Identities=28% Similarity=0.341 Sum_probs=39.9 Q ss_pred CCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCC---CEE Q ss_conf 20000000155555440121000022222343340642133310011366236530233302322034530745---338 Q gi|254780919|r 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN---TEV 125 (198) Q Consensus 49 ~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~---~~i 125 (198) .+|..-..|.+..+ -.+++++|+... +.. ..+ .+. .+.-+|.|+|..|.+.+.++. +++ T Consensus 51 ~pG~~~p~H~H~g~----~~~~VL~G~~~y-----~e~----~~~---~~~--aG~y~yeP~G~~Ht~~~~ed~~e~~~~ 112 (165) T 3cjx_A 51 APGLTLPLHFHTGT----VHMYTISGCWYY-----TEY----PGQ---KQT--AGCYLYEPGGSIHQFNTPRDNEGQTEV 112 (165) T ss_dssp CTTCBCCEEEESSC----EEEEEEESEEEE-----TTC----TTS---CEE--TTEEEEECTTCEECEECCTTCSSCEEE T ss_pred CCCCCCCCCEECCC----EEEEEEEEEEEE-----ECC----CCE---EEC--CCEEEEECCCCCCCCCCCCCCCCCEEE T ss_conf 99999588894878----099999656887-----338----971---889--972899899893257546888878899 Q ss_pred EEEEC Q ss_conf 97217 Q gi|254780919|r 126 IYKVT 130 (198) Q Consensus 126 ~Y~~~ 130 (198) ...+. T Consensus 113 lf~~~ 117 (165) T 3cjx_A 113 IFMLS 117 (165) T ss_dssp EEEEE T ss_pred EEEEE T ss_conf 99960 No 101 >3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative, PSI; HET: MSE; 1.70A {Marinobacter aquaeolei} Probab=24.63 E-value=35 Score=14.54 Aligned_cols=73 Identities=12% Similarity=0.111 Sum_probs=45.4 Q ss_pred CCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEEE Q ss_conf 20000000155555440121000022222343340642133310011366236530233302322034530745338972 Q gi|254780919|r 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYK 128 (198) Q Consensus 49 ~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~ 128 (198) .+|..-..|.+.. .-.++|++|...|-- | ... .+.-++.|+|..|+-.| ++.|+++.+ T Consensus 51 ~pG~~~p~H~H~g----~Ee~~VL~G~~~d~~----------g-----~~~--~G~y~~~p~G~~H~~~s-~~Gc~~lv~ 108 (223) T 3o14_A 51 APGSRFSAHTHDG----GEEFIVLDGVFQDEH----------G-----DYP--AGTYVRNPPTTSHVPGS-AEGCTIFVK 108 (223) T ss_dssp CTTEECCCEECTT----CEEEEEEEEEEEETT----------E-----EEE--TTEEEEECTTCEECCEE-SSCEEEEEE T ss_pred CCCCCCCCCCCCC----CEEEEEEEEEEEECC----------C-----CCC--CCEEEECCCCCEECCCC-CCCEEEEEE T ss_conf 9997568853177----539999855899899----------6-----699--98389769988578507-899189996 Q ss_pred ECCCCCCHHCEECCCC Q ss_conf 1787671017021688 Q gi|254780919|r 129 VTDFYSVEHDSGVAWQ 144 (198) Q Consensus 129 ~~~~y~p~~e~~i~~~ 144 (198) ... +.+.+...+..+ T Consensus 109 ~~~-~~~~d~~~~~~~ 123 (223) T 3o14_A 109 LWQ-FDPADRTQFSKN 123 (223) T ss_dssp ESC-SCTTCCBCEEEE T ss_pred ECC-CCCCCCCCCCCC T ss_conf 101-797641112578 No 102 >3ebr_A Uncharacterized RMLC-like cupin; YP_294607.1, RMLC-like cupin with unknown function, structural genomics; 2.60A {Ralstonia eutropha JMP134} Probab=21.04 E-value=42 Score=14.11 Aligned_cols=55 Identities=15% Similarity=0.138 Sum_probs=36.8 Q ss_pred CCCEEEECCCCCCCCCHHHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCC Q ss_conf 20000000155555440121000022222343340642133310011366236530233302322034530745 Q gi|254780919|r 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122 (198) Q Consensus 49 ~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~ 122 (198) .+|..-..|.+..+ -.++|++|+...-. . .+ .+ .-+.-++.|+|-.|.+.+..++ T Consensus 50 ~~G~~~p~H~H~g~----~~~~vl~G~~~~~~-----~-----~~---~~--~~G~~~~~P~G~~H~~~~~~~e 104 (159) T 3ebr_A 50 PAGMEMPRHHHTGT----VIVYTVQGSWRYKE-----H-----DW---VA--HAGSVVYETASTRHTPQSAYAE 104 (159) T ss_dssp CSSCBCCCEEESSC----EEEEEEESCEEETT-----S-----SC---CB--CTTCEEEECSSEEECEEESSSS T ss_pred CCCCCCCCCCCCCC----EEEEEEEEEEEEEC-----C-----CE---EE--CCCEEEEECCCCCCCCCCCCCC T ss_conf 99989876463776----49999984999978-----9-----88---77--2997999799981888656899 No 103 >2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A Probab=20.02 E-value=44 Score=13.99 Aligned_cols=55 Identities=13% Similarity=0.216 Sum_probs=35.2 Q ss_pred HHHEEECHHHHHHHHHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEEC-CCCEEEEEE Q ss_conf 1210000222223433406421333100113662365302333023220345307-453389721 Q gi|254780919|r 66 AKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLE-MNTEVIYKV 129 (198) Q Consensus 66 ~Klv~ci~G~I~dvvvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~-d~~~i~Y~~ 129 (198) ..+++|++|++-..+=| ...+ ..+.|.+ +.+++.++...|.|..++ +.+..++.+ T Consensus 141 ~E~~~Vl~G~l~~~~g~-----~~~~--~~~~L~~--GDSi~f~s~~pH~~~n~~g~~~a~il~V 196 (198) T 2bnm_A 141 NEFLFVLEGEIHMKWGD-----KENP--KEALLPT--GASMFVEEHVPHAFTAAKGTGSAKLIAV 196 (198) T ss_dssp CEEEEEEESCEEEEESC-----TTSC--EEEEECT--TCEEEECTTCCEEEEESTTSCCEEEEEE T ss_pred EEEEEEEEEEEEEEECC-----CCCC--CEEEECC--CCEEEECCCCCEEEEECCCCCEEEEEEE T ss_conf 59999986279999866-----6775--1699889--9889985999888894899941999999 Done!