HHSEARCH alignment of GI: 254780919 and SCOP domain: d2c0za1

Alignment
>d2c0za1 b.82.1.1 (A:1-190) Novobiocin biosynthesis protein NovW {Streptomyces caeruleus [TaxId: 195949]}
Probab=100.00  E-value=0  Score=405.67  Aligned_cols=181  Identities=31%  Similarity=0.554  Sum_probs=170.2

Q ss_pred             CCCCCEEEEECCEEEECCCEEEEEECHHHHHHC-CCCCCEEEEEEEECCCCCEEEECCCCCCCCCHHHHEEECHHHHHHH
Q ss_conf             965753997076220379504211088989867-9987413442331252000000015555544012100002222234
Q gi|254780919|r    1 MNINPVRILKTRKFEDSRGWFSQTYSSKLLKEL-GLQDVFVQDNHSFSFDCGTIRGLHFQRPPYAQAKLVRCIAGRIFDI   79 (198)
Q Consensus         1 L~I~gv~ii~~~~f~D~RG~f~e~f~~~~~~~~-~~~~~~~Q~n~S~s~~kgvlRGlH~Q~~p~~Q~Klv~ci~G~I~dv   79 (198)
                      ++|+||++++++.|.|+||+|.|+|+.+++.+. +..++|+|+|+|.| +|||+||||||.+|++|+|||+|++|+|+||
T Consensus         6 ~~I~Gv~ii~~~~~~D~RG~f~e~f~~~~~~~~~~~~~~~~q~n~S~s-~kgvlRGlH~q~~~~~q~Klv~~i~G~i~dv   84 (190)
T d2c0za1           6 LGIEGVWEITPEQRADPRGVFLDWYHVDRFAEAIGRPLRLAQANLSVS-VRGVVRGIHFVDVPPGQAKYVTCVRGAVFDV   84 (190)
T ss_dssp             CSSTTEEEEECEEEEETTEEEEECCCHHHHHHHHSSCCCCCEEEEEEE-ETTBEEEEEEECTTTCCCEEEEEEESEEEEE
T ss_pred             CCCCCEEEEECCCEECCCCCEEEEHHHHHHHHHHCCCCCCEEEEEHHH-HHHHEEEEEECCCCCCHHHEEEEEEEEEEEE
T ss_conf             558976999798216489487650248988875355854024310010-1431031133356642120023442017999


Q ss_pred             HHHCCCCHHHHHHEEEEEEECCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCCHHCEECCCCCCCCCCCCCCCCCCC
Q ss_conf             33406421333100113662365302333023220345307453389721787671017021688801177478887676
Q gi|254780919|r   80 AVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMNTEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTIL  159 (198)
Q Consensus        80 vvDlR~~SpTfgk~~~~~Ls~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~~~~~y~p~~e~~i~~~Dp~l~i~Wp~~~~~~  159 (198)
                      +||+|++|||||++..++|+++++++|+||+||||||+||+++|+++|++|++|+|++|.||+|+||.|+|+||+++   
T Consensus        85 ~vDlR~~S~t~gk~~~~~l~~~~~~~l~IP~G~aHGf~~L~~~t~i~Y~~s~~y~p~~e~~i~~~Dp~l~i~Wp~~~---  161 (190)
T d2c0za1          85 VVDLRVGSPTYGCWEGTRLDDVSRRAVYLSEGIGHGFCAISDEATLCYLSSGTYDPATEHGVHPLDPELAIDWPTGT---  161 (190)
T ss_dssp             EEECCBTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEEESSCCCTTTEEEBCTTCTTTCCCCSCSS---
T ss_pred             EEEECCCCCEEEEEEEECCCCCCCEEEEECCCCEEEEEECCCHHEEEEECCCCCCCCCCEEECCCCCHHCCCCCCCC---
T ss_conf             98502466525777530143332205883488277874327112447844785685565026689801099999998---


Q ss_pred             CEECHHHHCCCCHHHCCCCCEECCCCCCC
Q ss_conf             30167884599877818551235667878
Q gi|254780919|r  160 PSVSEKDQNLPFLNQIDSPFEYDGLPLLS  188 (198)
Q Consensus       160 piiS~kD~~~p~l~d~~~~f~~~~~~~~~  188 (198)
                      ||||+||+++|.|+|+.+...   +|+|.
T Consensus       162 ~iiS~kD~~~~~l~~~~~~~~---~p~~~  187 (190)
T d2c0za1         162 PLLSPRDQDALLLAEARDAGL---LPTYA  187 (190)
T ss_dssp             CBCCHHHHTCBCHHHHHHTTC---SCBHH
T ss_pred             CEECHHHHCCCCHHHHHHCCC---CCCHH
T ss_conf             883877818999899986699---99803


SCOP domain information

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: Novobiocin biosynthesis protein NovW
species: Streptomyces caeruleus [TaxId: 195949]