RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780919|ref|YP_003065332.1| dTDP-4-dehydrorhamnose 3,5-epimerase [Candidatus Liberibacter asiaticus str. psy62] (198 letters) >gnl|CDD|162258 TIGR01221, rmlC, dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen. Length = 176 Score = 211 bits (540), Expect = 8e-56 Identities = 85/174 (48%), Positives = 118/174 (67%), Gaps = 4/174 (2%) Query: 3 INPVRILKTRKFEDSRGWFSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIRGLHFQRPP 62 I V +++ R F D RG+F +TY+ + +E G+ FVQDNHS S+ G +RGLH+QRP Sbjct: 7 IPDVLLIEPRVFGDERGFFMETYNDEAFQEQGIPVRFVQDNHSKSYK-GVLRGLHYQRP- 64 Query: 63 YAQAKLVRCIAGRIFDIAVDIRRNSPTYGCWVSLEISANNGLQIYIPTGFAHGFMTLEMN 122 + Q KLVR + G +FD+AVD+RRNSPT+G WV + +SA N Q++IP GFAHGF+ L Sbjct: 65 HPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDE 124 Query: 123 TEVIYKVTDFYSVEHDSGVAWQDKSIDITWPLLDTILPSVSEKDQNLPFLNQID 176 E +YK TD+Y+ E++ G+ W D I I WPL D P +SEKD+N P L + + Sbjct: 125 AEFLYKCTDYYAPEYERGIIWNDPDIGIDWPLEDD--PILSEKDRNGPPLAEAE 176 >gnl|CDD|115195 pfam06523, DUF1106, Protein of unknown function (DUF1106). This family consists of several hypothetical bacterial proteins found in Escherichia coli and Citrobacter rodentium. The function of this family is unknown. Length = 91 Score = 26.5 bits (58), Expect = 4.9 Identities = 9/18 (50%), Positives = 13/18 (72%) Query: 39 FVQDNHSFSFDCGTIRGL 56 F ++ HSFS CG +RG+ Sbjct: 19 FEEEEHSFSIICGRLRGI 36 >gnl|CDD|177887 PLN02244, PLN02244, tocopherol O-methyltransferase. Length = 340 Score = 26.2 bits (58), Expect = 5.6 Identities = 10/23 (43%), Positives = 14/23 (60%) Query: 20 WFSQTYSSKLLKELGLQDVFVQD 42 W S + KL + LGLQD+ +D Sbjct: 256 WCSTSDYVKLAESLGLQDIKTED 278 >gnl|CDD|180648 PRK06663, PRK06663, flagellar hook-associated protein FlgL; Validated. Length = 419 Score = 25.8 bits (57), Expect = 6.8 Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 1/38 (2%) Query: 49 DCGTIRGLHFQRPPYAQAKLVRCIAGRIFDIAVDIRRN 86 D G I + PPY + IFD + +R Sbjct: 285 DLGLITN-ATKEPPYNYSNSAEVSGRSIFDSLIQLRDA 321 >gnl|CDD|183057 PRK11249, katE, hydroperoxidase II; Provisional. Length = 752 Score = 25.8 bits (57), Expect = 7.1 Identities = 8/18 (44%), Positives = 11/18 (61%) Query: 32 ELGLQDVFVQDNHSFSFD 49 ELG+Q + +D F FD Sbjct: 332 ELGVQLIPEEDEFKFDFD 349 >gnl|CDD|165396 PHA03124, PHA03124, dUTPase; Provisional. Length = 418 Score = 25.7 bits (56), Expect = 7.9 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 2/51 (3%) Query: 6 VRILKTRKFEDSRGW--FSQTYSSKLLKELGLQDVFVQDNHSFSFDCGTIR 54 RI+ +K + F SS LK L + VQD+ SF+ IR Sbjct: 309 TRIILPQKLACGKFRAAFILGRSSMNLKGLLVDPEHVQDDDWISFNITNIR 359 >gnl|CDD|179447 PRK02597, rpoC2, DNA-directed RNA polymerase subunit beta'; Provisional. Length = 1331 Score = 25.7 bits (57), Expect = 9.2 Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 5/21 (23%) Query: 36 QDVFVQDNHSFSFDCGTIRGL 56 QDV V++ DCGT RG+ Sbjct: 205 QDVIVRE-----EDCGTTRGI 220 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.323 0.139 0.434 Gapped Lambda K H 0.267 0.0687 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 3,235,442 Number of extensions: 193331 Number of successful extensions: 271 Number of sequences better than 10.0: 1 Number of HSP's gapped: 268 Number of HSP's successfully gapped: 10 Length of query: 198 Length of database: 5,994,473 Length adjustment: 88 Effective length of query: 110 Effective length of database: 4,092,969 Effective search space: 450226590 Effective search space used: 450226590 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 55 (25.0 bits)