HHsearch alignment for GI: 254780920 and conserved domain: COG2910
>COG2910 Putative NADH-flavin reductase [General function prediction only].
Probab=99.12 E-value=1.3e-10 Score=84.18 Aligned_cols=206 Identities=18% Similarity=0.190 Sum_probs=130.4
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEE
Q ss_conf 94899767882779999999986898799994788765856777620379749997638899999999862278717851
Q gi|254780920|r 1 MRLIVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVDICDRECIRSALKEFQPDAIVNF 80 (358)
Q Consensus 1 MkILItG~tGfIGs~l~~~Ll~~~~~~V~~~d~~~~~~~~~~~~~~~~~~~v~~i~~Di~d~~~l~~~~~~~~~d~ViHl 80 (358)
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~-RGHeVTAivRn-----~~K~~---~~~~~~i~q~Difd~~~~a~~l~g~--DaVIsA 69 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALK-RGHEVTAIVRN-----ASKLA---ARQGVTILQKDIFDLTSLASDLAGH--DAVISA 69 (211)
T ss_pred CEEEEEECCCHHHHHHHHHHHH-CCCEEEEEEEC-----HHHCC---CCCCCEEECCCCCCHHHHHHHHCCC--CEEEEE
T ss_conf 9078995374567999999986-79804899807-----67665---2235302000222745667663587--669972
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCC-CCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 23433222222222222222222202478886512322112478427863055-43112222222222222222222233
Q gi|254780920|r 81 AAESHVDRSILGADEFITTNIIGTFILLEETRLWWSCLSQDKKDQFRFLQIST-DEVYGSLDKGLFSEDMPYNPSSPYSA 159 (358)
Q Consensus 81 Aa~~~~~~~~~~p~~~~~~Nv~gt~nil~~~~~~~~~~~~~~~~~~~~v~~SS-~~vYg~~~~~~~~E~~~~~p~s~Yg~ 159 (358)
T Consensus 70 ~~~~~-----~~~~~~~~k---~~~~li~~l~---------~agv~RllVVGGAGSL~id~g--~rLvD~p~fP~ey~~~ 130 (211)
T COG2910 70 FGAGA-----SDNDELHSK---SIEALIEALK---------GAGVPRLLVVGGAGSLEIDEG--TRLVDTPDFPAEYKPE 130 (211)
T ss_pred CCCCC-----CCHHHHHHH---HHHHHHHHHH---------HCCCEEEEEECCCCCEEECCC--CEEECCCCCCHHHHHH
T ss_conf 15788-----871577888---9999999986---------159705999847420587688--4550589985667799
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCEEECCC
Q ss_conf 32210000001233322222222222223332222222222222222222222222-22332211332222000000012
Q gi|254780920|r 160 TKASSDYLVLAWGHTYGIPVLLSNCSNNYGPYHFPEKLIPLAITRMIEGSHVFLYG-DGQNVRDWLYVEDHVRALYLVLK 238 (358)
Q Consensus 160 sK~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~~~~~i~~~i~~~~~g~~~~i~g-~g~~~Rdfi~v~D~a~~i~~~~~ 238 (358)
T Consensus 131 A~~~ae~L~~-Lr~~~~l~WTfvSPaa~f~PGerTg~--------yrlggD~ll~n~~G~---SrIS~aDYAiA~lDe~E 198 (211)
T COG2910 131 ALAQAEFLDS-LRAEKSLDWTFVSPAAFFEPGERTGN--------YRLGGDQLLVNAKGE---SRISYADYAIAVLDELE 198 (211)
T ss_pred HHHHHHHHHH-HHHCCCCCEEEECCHHHCCCCCCCCC--------EEECCCEEEECCCCC---EEEEHHHHHHHHHHHHH
T ss_conf 9877899999-86356764599671784577655685--------676363577748885---03448999999998774
Q ss_pred CCCC-CCCCCC
Q ss_conf 2222-221113
Q gi|254780920|r 239 KGRI-GERYNI 248 (358)
Q Consensus 239 ~~~~-~~~fNi 248 (358)
T Consensus 199 ~~~h~rqRftv 209 (211)
T COG2910 199 KPQHIRQRFTV 209 (211)
T ss_pred CCCCCCEEEEE
T ss_conf 64531125641