HHsearch alignment for GI: 254780920 and conserved domain: TIGR03466
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=100.00 E-value=0 Score=404.48 Aligned_cols=304 Identities=23% Similarity=0.325 Sum_probs=240.2
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEE
Q ss_conf 94899767882779999999986898799994788765856777620379749997638899999999862278717851
Q gi|254780920|r 1 MRLIVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVDICDRECIRSALKEFQPDAIVNF 80 (358)
Q Consensus 1 MkILItG~tGfIGs~l~~~Ll~~~~~~V~~~d~~~~~~~~~~~~~~~~~~~v~~i~~Di~d~~~l~~~~~~~~~d~ViHl 80 (358)
T Consensus 1 MriLVTGgtGfiG~~l~~~L~~~-G~~V~~l~r~~~--~~~~~----~~~~~~~~~gDl~d~~~~~~~~~~~--d~ViH~ 71 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLER-GEEVRVLVRPTS--DRRNL----EGLDVEIVEGDLRDPASLRKALAGC--RALFHV 71 (328)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCC--CHHHH----CCCCCEEEEEECCCHHHHHHHHHCC--CEEEEE
T ss_conf 94999867779999999999978-498999989998--65565----2179779982079999999997178--589761
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCC-CCCCCCCCCCCC---CC
Q ss_conf 23433222222222222222222202478886512322112478427863055431122222-222222222222---22
Q gi|254780920|r 81 AAESHVDRSILGADEFITTNIIGTFILLEETRLWWSCLSQDKKDQFRFLQISTDEVYGSLDK-GLFSEDMPYNPS---SP 156 (358)
Q Consensus 81 Aa~~~~~~~~~~p~~~~~~Nv~gt~nil~~~~~~~~~~~~~~~~~~~~v~~SS~~vYg~~~~-~~~~E~~~~~p~---s~ 156 (358)
T Consensus 72 Aa~~~~--~~~~~~~~~~~Nv~gt~nll~aa~~---------~~v~r~V~~SS~~v~g~~~~~~~~~E~~p~~~~~~~~~ 140 (328)
T TIGR03466 72 AADYRL--WAPDPEEMYRANVEGTRNLLRAALE---------AGVERVVYTSSVATLGVPGDGTPADETTPSSLEKMIGH 140 (328)
T ss_pred CCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHH---------CCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 342344--6799899999999999999999997---------29874315633578557888874025676545666577
Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 23332210000001233322222222222223332222222222222222222222222223322113322220000000
Q gi|254780920|r 157 YSATKASSDYLVLAWGHTYGIPVLLSNCSNNYGPYHFPEKLIPLAITRMIEGSHVFLYGDGQNVRDWLYVEDHVRALYLV 236 (358)
Q Consensus 157 Yg~sK~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~~~~~i~~~i~~~~~g~~~~i~g~g~~~Rdfi~v~D~a~~i~~~ 236 (358)
T Consensus 141 Y~~sK~~aE~~~~~~~~~~gl~~~ilRp~~v~Gp~d~~~~~~~~~i~~~~~~~~p~~~~---~g~~~v~V~Dva~a~~~a 217 (328)
T TIGR03466 141 YKRSKFLAEEAALRMIAEKGLPVVIVNPSTPIGPRDIKPTPTGRIIVDFLRGKMPAYVD---TGLNLVHVDDVAEGHLLA 217 (328)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEECCCCEECCCCCCCCCHHHHHHHHHCCCCCEEEC---CCCEEEEEHHHHHHHHHH
T ss_conf 88999999999999999729975997778568899888876699999997599976755---871899838999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC-----------EEECCCCCC--------CCCEECCC
Q ss_conf 12222222111357864202688999988603426555686430-----------233488998--------65300317
Q gi|254780920|r 237 LKKGRIGERYNIGGNNERKNIDIVFEIGFLLDALIPKSYSHTEL-----------IRFIEDRPG--------HDRRYAID 297 (358)
Q Consensus 237 ~~~~~~~~~fNigs~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~-----------~~~~~~~~~--------~~~~~~~d 297 (358)
T Consensus 218 ~~~~~~g~~y~~~-~~~~t~~e~~~~i~~~~g~~~~~~~~p~~~~~~~~~~~e~~~~~~~~~p~~~~~~~~~~~~~~~~d 296 (328)
T TIGR03466 218 LERGRIGERYILG-GENLTLAQILAKLAEITGRKAPRVKLPRWLLLPVAWGAEALARLTGKEPRVTLDGVRMAKKKMYFS 296 (328)
T ss_pred HHCCCCCCEEEEC-CCCCCHHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCC
T ss_conf 7579989879979-997109999999999858998711057378888899999988741999876467776415663117
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 18999981896610899999999999988678
Q gi|254780920|r 298 SSKIKSEIGWFPQENMESGLNKTVCWYLDNNW 329 (358)
Q Consensus 298 ~~K~~~~Lgw~p~~~l~egi~~~i~w~~~n~~ 329 (358)
T Consensus 297 ~~kA~~~LG~~p~-~~eegl~~tv~W~~~nG~ 327 (328)
T TIGR03466 297 SDKAVRELGYRQR-PAREALRDAVEWFRANGY 327 (328)
T ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHHHCCC
T ss_conf 7999998299978-899999999999998689