HHsearch alignment for GI: 254780920 and conserved domain: TIGR03589
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=100.00 E-value=0 Score=336.51 Aligned_cols=246 Identities=23% Similarity=0.288 Sum_probs=207.9
Q ss_pred EEEEECCCCHHHHHHHHHHHHHC-CCEEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEE
Q ss_conf 48997678827799999999868-98799994788765856777620379749997638899999999862278717851
Q gi|254780920|r 2 RLIVTGGAGFIGSALCRYLVNDL-KIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVDICDRECIRSALKEFQPDAIVNF 80 (358)
Q Consensus 2 kILItG~tGfIGs~l~~~Ll~~~-~~~V~~~d~~~~~~~~~~~~~~~~~~~v~~i~~Di~d~~~l~~~~~~~~~d~ViHl 80 (358)
T Consensus 6 ~ILVTGGaGfIGS~lv~~Ll~~~~~~~iii~~~de~--~~~~l~~~~~~~~i~f~~gDIrD~~~l~~~~~~--vD~VfHa 81 (324)
T TIGR03589 6 SILITGGTGSFGKAFISRLLENYNPKKIIIYSRDEL--KQWEMQQKFPAPCLRFFIGDVRDKERLTRALRG--VDYVVHA 81 (324)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCCC--CHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCC--CCEEEEC
T ss_conf 999907977999999999997299828999668640--328898516898759996777788999976348--8899994
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 23433222222222222222222202478886512322112478427863055431122222222222222222222333
Q gi|254780920|r 81 AAESHVDRSILGADEFITTNIIGTFILLEETRLWWSCLSQDKKDQFRFLQISTDEVYGSLDKGLFSEDMPYNPSSPYSAT 160 (358)
Q Consensus 81 Aa~~~~~~~~~~p~~~~~~Nv~gt~nil~~~~~~~~~~~~~~~~~~~~v~~SS~~vYg~~~~~~~~E~~~~~p~s~Yg~s 160 (358)
T Consensus 82 AA~khVp~se~nP~e~i~tNV~Gt~nlleaa~---------~~~Vkk~V~iSTDka--------------~~P~n~yGas 138 (324)
T TIGR03589 82 AALKQVPAAEYNPFECIRTNINGAQNVIDAAI---------DNGVKRVVALSTDKA--------------ANPINLYGAT 138 (324)
T ss_pred CCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHH---------HCCCCEEEEECCCCC--------------CCCCCCCCCC
T ss_conf 62776726776989999999799999999988---------555431786226888--------------8996743123
Q ss_pred CCCCEEEEC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 221000000---1233322222222222223332222222222222222222-222222223322113322220000000
Q gi|254780920|r 161 KASSDYLVL---AWGHTYGIPVLLSNCSNNYGPYHFPEKLIPLAITRMIEGS-HVFLYGDGQNVRDWLYVEDHVRALYLV 236 (358)
Q Consensus 161 K~~~E~~~~---~~~~~~~l~~~ilR~~~vyGp~~~~~~~i~~~i~~~~~g~-~~~i~g~g~~~Rdfi~v~D~a~~i~~~ 236 (358)
T Consensus 139 K~~~E~l~~~~~~~~~~~~~~~~~vRygNV~gsrgS---ViP~F~~qi~~g~~~~~i-td~~mtRf~mtv~dav~lV~~a 214 (324)
T TIGR03589 139 KLASDKLFVAANNISGSKGTRFSVVRYGNVVGSRGS---VVPFFKSLKEEGVTELPI-TDPRMTRFWITLEQGVNFVLKS 214 (324)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCC---CHHHHHHHHHCCCCCCCC-CCCCEEEEEEEHHHHHHHHHHH
T ss_conf 676799999999850788863788633275188866---399999999839997444-9998079988899999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 1222222211135786420268899998860342655568643023348899865
Q gi|254780920|r 237 LKKGRIGERYNIGGNNERKNIDIVFEIGFLLDALIPKSYSHTELIRFIEDRPGHD 291 (358)
Q Consensus 237 ~~~~~~~~~fNigs~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (358)
T Consensus 215 ~~~~~~GEifv~k-~~s~~i~dla~~~~~------------~~~~k~iG~RpGEK 256 (324)
T TIGR03589 215 LERMLGGEIFVPK-IPSMKITDLAEAMAP------------ECPHKIVGIRPGEK 256 (324)
T ss_pred HHHCCCCEEEECC-CCCCHHHHHHHHHHC------------CCCEEECCCCCCHH
T ss_conf 9828898499836-970259999998604------------69861457888602