HHsearch alignment for GI: 254780920 and conserved domain: pfam04321
>pfam04321 RmlD_sub_bind RmlD substrate binding domain. L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesized by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide.
Probab=100.00 E-value=0 Score=383.03 Aligned_cols=279 Identities=23% Similarity=0.288 Sum_probs=236.3
Q ss_pred EEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECC
Q ss_conf 89976788277999999998689879999478876585677762037974999763889999999986227871785123
Q gi|254780920|r 3 LIVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVDICDRECIRSALKEFQPDAIVNFAA 82 (358)
Q Consensus 3 ILItG~tGfIGs~l~~~Ll~~~~~~V~~~d~~~~~~~~~~~~~~~~~~~v~~i~~Di~d~~~l~~~~~~~~~d~ViHlAa 82 (358)
T Consensus 1 ILVtG~~GfiGs~l~~~L~~-~g~~v~~~~r~---------------------~~D~~d~~~l~~~~~~~~pd~VihlAa 58 (284)
T pfam04321 1 ILVTGANGQLGRELTRLLAE-RGVEVVALDRP---------------------ELDLTDPEAVAALVREARPDVVVNAAA 58 (284)
T ss_pred EEEECCCCHHHHHHHHHHHH-CCCEEEEECCC---------------------CCCCCCHHHHHHHHHHCCCCEEEECCC
T ss_conf 69964899899999999986-89989995486---------------------257889999999998649979997241
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 43322222222222222222220247888651232211247842786305543112222222222222222222233322
Q gi|254780920|r 83 ESHVDRSILGADEFITTNIIGTFILLEETRLWWSCLSQDKKDQFRFLQISTDEVYGSLDKGLFSEDMPYNPSSPYSATKA 162 (358)
Q Consensus 83 ~~~~~~~~~~p~~~~~~Nv~gt~nil~~~~~~~~~~~~~~~~~~~~v~~SS~~vYg~~~~~~~~E~~~~~p~s~Yg~sK~ 162 (358)
T Consensus 59 ~~~~~~~~~~~~~~~~~Nv~~t~~l~~~~~~~---------~~-~~i~~Ss~~Vy~g~~~~p~~E~~~~~P~~~Yg~sK~ 128 (284)
T pfam04321 59 YTAVDKAESEPELAYAVNALGPGNLAEACAAR---------GA-PLIHISTDYVFDGAKGGPYREDDPTGPLNVYGRTKL 128 (284)
T ss_pred CCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHC---------CC-CEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 35556777488889987599999999998744---------98-579841753000689988545777789880165758
Q ss_pred CCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC-
Q ss_conf 1000000123332222222222222333222222222222222222222222222332211332222000000012222-
Q gi|254780920|r 163 SSDYLVLAWGHTYGIPVLLSNCSNNYGPYHFPEKLIPLAITRMIEGSHVFLYGDGQNVRDWLYVEDHVRALYLVLKKGR- 241 (358)
Q Consensus 163 ~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~~~~~i~~~i~~~~~g~~~~i~g~g~~~Rdfi~v~D~a~~i~~~~~~~~- 241 (358)
T Consensus 129 ~~E~~~~~~~----~~~~IlR~~~vyG~~~~--~~~~~~~~~~~~~~~i~i~~--d~~~~~~~v~D~a~~~~~~~e~~~~ 200 (284)
T pfam04321 129 AGEQAVLAAN----PRHLILRTAWVYGEYGN--NFVKTMLRLAAERDELRVVD--DQLGSPTSARDLADALLALIRKRLR 200 (284)
T ss_pred HHHHHHHHHC----CCCEEEEEEEECCCCCC--CHHHHHHHHHHCCCCCEEEC--CCCCCCEEHHHHHHHHHHHHHHCCC
T ss_conf 9999999725----34607877344288887--88999999986289826853--7568969899999999999982033
Q ss_pred ---CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC-CCCCCEEECCCCCCCCCEECCCHHHHHHHHCCCCCCCHHHHH
Q ss_conf ---2221113578642026889999886034265556-864302334889986530031718999981896610899999
Q gi|254780920|r 242 ---IGERYNIGGNNERKNIDIVFEIGFLLDALIPKSY-SHTELIRFIEDRPGHDRRYAIDSSKIKSEIGWFPQENMESGL 317 (358)
Q Consensus 242 ---~~~~fNigs~~~~s~~e~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~K~~~~Lgw~p~~~l~egi 317 (358)
T Consensus 201 ~~~~~giyNi~~~~~~s~~ela~~i~~~~g~~~~~i~~v~~~~~~~~~~r---P~~~~lD~sK~~~~lg~~p~-~~~egl 276 (284)
T pfam04321 201 GPALAGTYHLAGSGETSWYDFARAIFDEAGADGGRVRPIPTAEYPTPARR---PANSVLDTSKLEATFGIPLP-DWREAL 276 (284)
T ss_pred CCCCCCCEEECCCCCEEHHHHHHHHHHHHCCCCCCEEEEEHHHCCCCCCC---CCCCCCCHHHHHHHHCCCCC-CHHHHH
T ss_conf 77777613741898440999999999996888774266118888878999---76001559999997687999-899999
Q ss_pred HHHHHHHH
Q ss_conf 99999998
Q gi|254780920|r 318 NKTVCWYL 325 (358)
Q Consensus 318 ~~~i~w~~ 325 (358)
T Consensus 277 ~~~l~~~~ 284 (284)
T pfam04321 277 AEVLDELL 284 (284)
T ss_pred HHHHHHHC
T ss_conf 99999969