RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780920|ref|YP_003065333.1| dTDP-glucose 4,6-dehydratase
[Candidatus Liberibacter asiaticus str. psy62]
(358 letters)
>gnl|CDD|31285 COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope
biogenesis, outer membrane].
Length = 340
Score = 492 bits (1267), Expect = e-140
Identities = 196/337 (58%), Positives = 239/337 (70%), Gaps = 14/337 (4%)
Query: 1 MRLIVTGGAGFIGSALCRYLVND-LKIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVDI 59
M+++VTGGAGFIGS RY++N V+ +DKLTYAGNL +L ++ S + F+Q DI
Sbjct: 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDI 60
Query: 60 CDRECIRSALKEFQPDAIVNFAAESHVDRSILGADEFITTNIIGTFILLEETRLWWSCLS 119
CDRE + KE+QPDA+V+FAAESHVDRSI G FI TN++GT+ LLE R +W
Sbjct: 61 CDRELVDRLFKEYQPDAVVHFAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWG--- 117
Query: 120 QDKKDQFRFLQISTDEVYGSLDKG--LFSEDMPYNPSSPYSATKASSDYLVLAWGHTYGI 177
+FRF ISTDEVYG L F+E PYNPSSPYSA+KA+SD LV A+ TYG+
Sbjct: 118 -----KFRFHHISTDEVYGDLGLDDDAFTETTPYNPSSPYSASKAASDLLVRAYVRTYGL 172
Query: 178 PVLLSNCSNNYGPYHFPEKLIPLAITRMIEGSHVFLYGDGQNVRDWLYVEDHVRALYLVL 237
P ++ CSNNYGPY FPEKLIPL I + G + +YGDG +RDWLYVEDH RA+ LVL
Sbjct: 173 PATITRCSNNYGPYQFPEKLIPLMIINALLGKPLPVYGDGLQIRDWLYVEDHCRAIDLVL 232
Query: 238 KKGRIGERYNIGGNNERKNIDIVFEIGFLLDALIPKSYSHTELIRFIEDRPGHDRRYAID 297
KG+IGE YNIGG NER N+++V I LL P + +LI F+EDRPGHDRRYAID
Sbjct: 233 TKGKIGETYNIGGGNERTNLEVVKTICELLGKDKP---DYRDLITFVEDRPGHDRRYAID 289
Query: 298 SSKIKSEIGWFPQENMESGLNKTVCWYLDNNWWWRPL 334
+SKIK E+GW PQE E+GL KTV WYLDN WWW PL
Sbjct: 290 ASKIKRELGWRPQETFETGLRKTVDWYLDNEWWWEPL 326
>gnl|CDD|35966 KOG0747, KOG0747, KOG0747, Putative NAD+-dependent epimerases
[Carbohydrate transport and metabolism].
Length = 331
Score = 259 bits (662), Expect = 1e-69
Identities = 130/329 (39%), Positives = 193/329 (58%), Gaps = 14/329 (4%)
Query: 2 RLIVTGGAGFIGSALCRYLVNDLK-IQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVDIC 60
+++TGGAGFIGS YLV+ + + +DKL Y NL +L+ + S + F++ DI
Sbjct: 8 NVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDYCSNLKNLEPVRNSPNYKFVEGDIA 67
Query: 61 DRECIRSALKEFQPDAIVNFAAESHVDRSILGADEFITTNIIGTFILLEETRLWWSCLSQ 120
D + + + + D +++FAA++HVDRS + EF NI+ T +LLE +
Sbjct: 68 DADLVLYLFETEEIDTVIHFAAQTHVDRSFGDSFEFTKNNILSTHVLLE------AVRVS 121
Query: 121 DKKDQFRFLQISTDEVYG-SLDKGLFSEDMPYNPSSPYSATKASSDYLVLAWGHTYGIPV 179
RF+ +STDEVYG S + + E NP++PY+A+KA+++ LV ++G +YG+PV
Sbjct: 122 GNIR--RFVHVSTDEVYGDSDEDAVVGEASLLNPTNPYAASKAAAEMLVRSYGRSYGLPV 179
Query: 180 LLSNCSNNYGPYHFPEKLIPLAITRMIEGSHVFLYGDGQNVRDWLYVEDHVRALYLVLKK 239
+ + +N YGP +PEKLIP I + G ++GDG R +LYVED A VL+K
Sbjct: 180 VTTRMNNVYGPNQYPEKLIPKFIKLAMRGKEYPIHGDGLQTRSYLYVEDVSEAFKAVLEK 239
Query: 240 GRIGERYNIGGNNERKNIDIVFEIGFLLDALIPKSYSHTE-LIRFIEDRPGHDRRYAIDS 298
G +GE YNIG ++E + ID+ +I L + +P TE I F+EDRP +D RY +D
Sbjct: 240 GELGEIYNIGTDDEMRVIDLAKDICELFEKRLPN--IDTEPFIFFVEDRPYNDLRYFLDD 297
Query: 299 SKIKSEIGWFPQENMESGLNKTVCWYLDN 327
KIK +GW P E GL KT+ WY N
Sbjct: 298 EKIKK-LGWRPTTPWEEGLRKTIEWYTKN 325
>gnl|CDD|144821 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family.
This family of proteins utilize NAD as a cofactor. The
proteins in this family use nucleotide-sugar substrates
for a variety of chemical reactions.
Length = 235
Score = 236 bits (604), Expect = 7e-63
Identities = 95/249 (38%), Positives = 129/249 (51%), Gaps = 19/249 (7%)
Query: 4 IVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVDICDRE 63
+VTGG GFIGSAL R L +V+V L SL + F F + D+ D +
Sbjct: 2 LVTGGTGFIGSALVRRL-LQEGYEVIV---LGRRRRSESL--NTGRIRFRFHEGDLTDPD 55
Query: 64 CIRSALKEFQPDAIVNFAAESHVDRSILGADEFITTNIIGTFILLEETRLWWSCLSQDKK 123
+ L E QPDA+++ AA+S V S EFI N++GT LLE R +
Sbjct: 56 ALERLLAEVQPDAVIHLAAQSGVGASFEDPAEFIRANVLGTLNLLEAAR---------RA 106
Query: 124 DQFRFLQISTDEVYGSLDKGLFSEDMPYNPSSPYSATKASSDYLVLAWGHTYGIPVLLSN 183
RF+ S+ EVYG + +ED P P SPY+A K + + LVLA+ YG+ ++
Sbjct: 107 GVKRFVFASSSEVYGDVADPPITEDTPLGPLSPYAAAKLAGERLVLAYARAYGLRAVILR 166
Query: 184 CSNNYGPY---HFPEKLIPLAITRMIEG-SHVFLYGDGQNVRDWLYVEDHVRALYLVLKK 239
N YGP F +IP I R++EG + L GDG RD+LYV+D RA+ L L+
Sbjct: 167 LFNVYGPGDNDTFVTHVIPALIRRILEGKPEILLLGDGTQRRDFLYVDDVARAILLALEH 226
Query: 240 GRIGERYNI 248
GE YNI
Sbjct: 227 PDGGEVYNI 235
>gnl|CDD|30800 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell
envelope biogenesis, outer membrane / Carbohydrate
transport and metabolism].
Length = 314
Score = 157 bits (396), Expect = 5e-39
Identities = 99/336 (29%), Positives = 156/336 (46%), Gaps = 34/336 (10%)
Query: 1 MRLIVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVDIC 60
MR++VTGGAGFIGS L L+ V +D+L + F+ +D+
Sbjct: 1 MRILVTGGAGFIGSHLVERLLAA-GHDVRGLDRLRDGLDPLLSG-------VEFVVLDLT 52
Query: 61 DRECIRSALKEFQPDAIVNFAAESHVDRSILG-ADEFITTNIIGTFILLEETRLWWSCLS 119
DR+ + K PDA+++ AA+S V S EF+ N+ GT LLE + +
Sbjct: 53 DRDLVDELAKGV-PDAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLE------AARA 105
Query: 120 QDKKDQFRFLQIST-DEVYGSLDKGLFSEDM-PYNPSSPYSATKASSDYLVLAWGHTYGI 177
K RF+ S+ VYG ED+ P P +PY +K +++ L+ A+ YG+
Sbjct: 106 AGVK---RFVFASSVSVVYGDPPPLPIDEDLGPPRPLNPYGVSKLAAEQLLRAYARLYGL 162
Query: 178 PVLLSNCSNNYGP---YHFPEKLIPLAITRMIEGSHVFL-YGDGQNVRDWLYVEDHVRAL 233
PV++ N YGP ++ I ++++G + + GDG RD++YV+D AL
Sbjct: 163 PVVILRPFNVYGPGDKPDLSSGVVSAFIRQLLKGEPIIVIGGDGSQTRDFVYVDDVADAL 222
Query: 234 YLVLKKGRIGERYNIGGNNERKNIDIVFEIGFLLDALIPKSYSHTELIRFIEDRPGHD-- 291
L L+ G +NIG + L +A+ S LI +I D
Sbjct: 223 LLALENPD-GGVFNIGSGTAE------ITVRELAEAVAEAVGSKAPLIVYIPLGRRGDLR 275
Query: 292 RRYAIDSSKIKSEIGWFPQENMESGLNKTVCWYLDN 327
+D SK ++ +GW P+ ++E GL T+ W L
Sbjct: 276 EGKLLDISKARAALGWEPKVSLEEGLADTLEWLLKK 311
>gnl|CDD|31284 COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis,
outer membrane].
Length = 329
Score = 144 bits (365), Expect = 3e-35
Identities = 90/349 (25%), Positives = 152/349 (43%), Gaps = 45/349 (12%)
Query: 1 MRLIVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVDIC 60
M+++VTGGAG+IGS R L+ +V+V+D L+ N K F F + D+
Sbjct: 1 MKVLVTGGAGYIGSHTVRQLLKT-GHEVVVLDNLS-----NGHKIALLKLQFKFYEGDLL 54
Query: 61 DRECIRSALKEFQPDAIVNFAAESHVDRSILGADEFITTNIIGTFILLEETRLWWSCLSQ 120
DR + + +E + DA+V+FAA V S+ ++ N++GT L+E + Q
Sbjct: 55 DRALLTAVFEENKIDAVVHFAASISVGESVQNPLKYYDNNVVGTLNLIE-------AMLQ 107
Query: 121 DKKDQFRFLQISTDEVYGSLDKGLFSEDMPYNPSSPYSATKASSDYLVLAWGHTYGIPVL 180
+F F ST VYG SE P P +PY +K S+ ++ V+
Sbjct: 108 TGVKKFIF--SSTAAVYGEPTTSPISETSPLAPINPYGRSKLMSEEILRDAAKANPFKVV 165
Query: 181 L--------SNCSNNYGPYHFPEK-LIPLAI-TRMIEGSHVFLYG------DGQNVRDWL 224
+ + G + LIP+A + + +F++G DG +RD++
Sbjct: 166 ILRYFNVAGACPDGTLGQRYPGATLLIPVAAEAALGKRDKLFIFGDDYDTKDGTCIRDYI 225
Query: 225 YVED----HVRALYLVLKKGRIGERYNIGGNNERKNIDIVFEIGFLLDALIPKSYSHTEL 280
+V+D HV AL LK+G +N+G N ++++ + IP
Sbjct: 226 HVDDLADAHVLALK-YLKEGGSNNIFNLGSGNGFSVLEVIEAAKKVTGRDIP-------- 276
Query: 281 IRFIEDRPGHDRRYAIDSSKIKSEIGWFPQ-ENMESGLNKTVCWYLDNN 328
+ R G DSSK + +GW P +++E + W+ +
Sbjct: 277 VEIAPRRAGDPAILVADSSKARQILGWQPTYDDLEDIIKDAWDWHQQRH 325
>gnl|CDD|36585 KOG1371, KOG1371, KOG1371, UDP-glucose
4-epimerase/UDP-sulfoquinovose synthase [Cell
wall/membrane/envelope biogenesis].
Length = 343
Score = 123 bits (311), Expect = 7e-29
Identities = 90/355 (25%), Positives = 141/355 (39%), Gaps = 46/355 (12%)
Query: 1 MRLIVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFS----FLQ 56
++VTGGAG+IGS L+ V+++D L L SLK + Q F++
Sbjct: 3 KHVLVTGGAGYIGSHTVLALLKR-GYGVVIVDNLN-NSYLESLKRVRQLLGEGKSVFFVE 60
Query: 57 VDICDRECIRSALKEFQPDAIVNFAAESHVDRSILGADEFITTNIIGTFILLEETRLWWS 116
D+ D E + E + DA+++FAA + V S+ + NI GT LLE +
Sbjct: 61 GDLNDAEALEKLFSEVKFDAVMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMK---- 116
Query: 117 CLSQDKKDQFRFLQISTDEVYGSLDKGLFSEDMPY-NPSSPYSATKASSDYLVLAWGHTY 175
+ + S+ VYG K +E+ P P++PY TK + + ++ + Y
Sbjct: 117 -----AHNVKALVFSSSATVYGLPTKVPITEEDPTDQPTNPYGKTKKAIEEIIHDYNKAY 171
Query: 176 GIPVLLSNCSNNYG----------PYHFPEKLIP----LAITRMIEGS---HVFLYGDGQ 218
G V N G P P L+P +AI R + DG
Sbjct: 172 GWKVTGLRYFNVIGAHPSGRIGEAPLGIPNNLLPYVFQVAIGRRPNLQVVGRDYTTIDGT 231
Query: 219 NVRDWLYVED----HVRALYLVLKKGRIGERYNIGGNNERKNIDIVFEIGFLLDALIPKS 274
VRD+++V D HV AL + G YN+G +++V L I K
Sbjct: 232 IVRDYIHVLDLADGHVAALGKLRGAAEFGV-YNLGTGKGSSVLELVTAFEKALGVKIKK- 289
Query: 275 YSHTELIRFIEDRPGHDRRYAIDSSKIKSEIGWFPQENMESGLNKTVCWYLDNNW 329
+ + R G + SK + E+GW + ++ L W N
Sbjct: 290 -------KVVPRRNGDVAFVYANPSKAQRELGWKAKYGLQEMLKDLWRWQKQNPS 337
>gnl|CDD|31286 COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis,
outer membrane].
Length = 345
Score = 111 bits (279), Expect = 3e-25
Identities = 85/346 (24%), Positives = 148/346 (42%), Gaps = 30/346 (8%)
Query: 2 RLIVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLK----EISQSNLFSFLQV 57
++TG G GS L L+ +V I + + + N +
Sbjct: 4 VALITGITGQDGSYLAELLLE-KGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYG 62
Query: 58 DICDRECIRSALKEFQPDAIVNFAAESHVDRSILGADEFITTNIIGTFILLEETRLWWSC 117
D+ D + L+E QPD I N AA+SHV S + + IGT LLE R+
Sbjct: 63 DLTDSSNLLRILEEVQPDEIYNLAAQSHVGVSFEQPEYTADVDAIGTLRLLEAIRIL--- 119
Query: 118 LSQDKKDQFRFLQISTDEVYGSLDKGLFSEDMPYNPSSPYSATKASSDYLVLAWGHTYGI 177
+ + RF Q ST E+YG + + E P+ P SPY+ K + ++ + + +YG+
Sbjct: 120 ----GEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESYGL 175
Query: 178 PVLLSNCSNNYGPYH---FPEKLIPLAITRMIEGSHVFLY-GDGQNVRDWLYVEDHVRAL 233
N+ P F + I A+ R+ G LY G+ RDW + +D+V A+
Sbjct: 176 FACNGILFNHESPLRGETFVTRKITRAVARIKLGLQDKLYLGNLDAKRDWGHAKDYVEAM 235
Query: 234 YLVLKKGRIGERYNIG---GNNERKNIDIVFE--------IGFLLDALIPKSYSHTELIR 282
+L+L++ + Y I ++ R+ +++ FE G +D + + ++
Sbjct: 236 WLMLQQEE-PDDYVIATGETHSVREFVELAFEMVGIDLEWEGTGVDEKGVDAKTGKIIVE 294
Query: 283 FIED--RPGHDRRYAIDSSKIKSEIGWFPQENMESGLNKTVCWYLD 326
RP D +K K ++GW P+ ++E + + V L+
Sbjct: 295 IDPRYFRPAEVDLLLGDPTKAKEKLGWRPEVSLEELVREMVEADLE 340
>gnl|CDD|36642 KOG1429, KOG1429, KOG1429, dTDP-glucose
4-6-dehydratase/UDP-glucuronic acid decarboxylase
[Carbohydrate transport and metabolism, Cell
wall/membrane/envelope biogenesis].
Length = 350
Score = 98.9 bits (246), Expect = 2e-21
Identities = 94/331 (28%), Positives = 144/331 (43%), Gaps = 35/331 (10%)
Query: 1 MRLIVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVDIC 60
+R+++TGGAGFIGS L L+ + +V+ +D N I N F ++ D+
Sbjct: 28 LRILITGGAGFIGSHLVDKLMTEGH-EVIALDNYFTGRKENLEHWIGHPN-FELIRHDVV 85
Query: 61 DRECIRSALKEFQPDAIVNFAAESHVDRSILGADEFITTNIIGTFILLEETRLWWSCLSQ 120
+ LKE D I + AA + + I TN+IGT +L
Sbjct: 86 EP-----LLKEV--DQIYHLAAPASPPHYKYNPVKTIKTNVIGTLNMLGLA--------- 129
Query: 121 DKKDQFRFLQISTDEVYGSLDKGLFSED-----MPYNPSSPYSATKASSDYLVLAWGHTY 175
K+ RFL ST EVYG E P P S Y K ++ L A+
Sbjct: 130 -KRVGARFLLASTSEVYGDPLVHPQVETYWGNVNPIGPRSCYDEGKRVAETLCYAYHKQE 188
Query: 176 GIPVLLSNCSNNYGPY-HF-PEKLIPLAITRMIEGSHVFLYGDGQNVRDWLYVEDHVRAL 233
GI V ++ N YGP H +++ I + + G + +YGDG+ R + YV D V L
Sbjct: 189 GIEVRIARIFNTYGPRMHMDDGRVVSNFIAQALRGEPLTVYGDGKQTRSFQYVSDLVEGL 248
Query: 234 YLVLKKGRIGERYNIGGNNERKNIDIVFEIGFLLDALIPKSYSHTELIRFIEDRPGHDRR 293
L L + NIG E F + L + ++ + I F+E+ P R+
Sbjct: 249 -LRLMESDYRGPVNIGNPGE-------FTMLELAE-MVKELIGPVSEIEFVENGPDDPRK 299
Query: 294 YAIDSSKIKSEIGWFPQENMESGLNKTVCWY 324
D +K K ++GW P+ ++ GL TV ++
Sbjct: 300 RKPDITKAKEQLGWEPKVSLREGLPLTVTYF 330
>gnl|CDD|36586 KOG1372, KOG1372, KOG1372, GDP-mannose 4,6 dehydratase
[Carbohydrate transport and metabolism].
Length = 376
Score = 81.2 bits (200), Expect = 4e-16
Identities = 72/290 (24%), Positives = 122/290 (42%), Gaps = 51/290 (17%)
Query: 51 LFSFLQVDICDRECIRSALKEFQPDAIVNFAAESHVDRSILGADEFITTNIIGTFILLEE 110
D+ D C+ + +P + N AA+SHV S + + +GT LL+
Sbjct: 84 SMKLHYGDMTDSSCLIKLISTIKPTEVYNLAAQSHVKVSFDLPEYTAEVDAVGTLRLLDA 143
Query: 111 TRLWWSCLSQDKKDQFRFLQISTDEVYGSLDKGLFSEDMPYNPSSPYSATKASSDYLVLA 170
R +C +K RF Q ST E+YG + + SE P+ P SPY+A K ++V+
Sbjct: 144 IR---ACRLTEK---VRFYQASTSELYGKVQEIPQSETTPFYPRSPYAAAKMYGYWIVVN 197
Query: 171 WGHTYGI----PVLLSNCSNNYGPYHFPEKLIPLAITRMIEG--SHVFLYGDGQNVRDWL 224
+ Y + +L ++ S G +F + I ++ ++ G + L G+ +RDW
Sbjct: 198 YREAYNMFACNGILFNHESPRRGE-NFVTRKITRSVAKISLGQQEKIEL-GNLSALRDWG 255
Query: 225 YVEDHVRALYLVLKK------------------------GRIGERYNIGGNNERKNIDIV 260
+ D+V A++L+L++ IGE N G +
Sbjct: 256 HAGDYVEAMWLMLQQDSPDDFVIATGEQHSVREFCNLAFAEIGEVLNWEGEGV--DEVGK 313
Query: 261 FEIGFLLDALIPKSYSHTELIRFIEDRPGHDRRYAIDSSKIKSEIGWFPQ 310
+ G + + PK Y TE ++ G D+SK K +GW P+
Sbjct: 314 NDDGVVRVKVDPKYYRPTE----VDTLQG-------DASKAKKTLGWKPK 352
>gnl|CDD|36643 KOG1430, KOG1430, KOG1430, C-3 sterol
dehydrogenase/3-beta-hydroxysteroid dehydrogenase and
related dehydrogenases [Lipid transport and metabolism,
Amino acid transport and metabolism].
Length = 361
Score = 80.4 bits (198), Expect = 8e-16
Identities = 86/360 (23%), Positives = 146/360 (40%), Gaps = 57/360 (15%)
Query: 2 RLIVTGGAGFIGSALCRYLV-NDLKIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVDIC 60
++VTGG+GF+G L + L+ N+LK+++ V+DK NL + +S + + D+
Sbjct: 6 SVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGFRSGRVTVILGDLL 65
Query: 61 DRECIRSALKEFQPDAIVNFAAESHVDRSILGADEFITTNIIGTFILLEETRLWWSCLSQ 120
D I +A FQ +V+ AA D D + N+ GT ++E +C
Sbjct: 66 DANSISNA---FQGAVVVHCAASPVPDFVENDRDLAMRVNVNGTLNVIE------ACKEL 116
Query: 121 DKKDQFRFLQISTDEVYGSLDKGLF---SEDMPYNPSSPYSATKASSDYLVLAWGHTYGI 177
K R + S+ V + + S P PY +KA ++ LVL G
Sbjct: 117 GVK---RLIYTSSAYVVFGGEPIINGDESLPYPLKHIDPYGESKALAEKLVLE---ANGS 170
Query: 178 PVLLSNC---SNNYGP--YHFPEKLIPLAITRMIEGSHVFLYGDGQNVRDWLYVED---- 228
L + YGP K++ +F GDG+N+ D+ Y E+
Sbjct: 171 DDLYTCALRPPGIYGPGDKRLLPKIVEALKNGGF----LFKIGDGENLNDFTYGENVAWA 226
Query: 229 HV---RALYLVLKKGRIGERYNIGGNNERKNIDIVFEI----GFLLDALIPKSYSHT--- 278
H+ RAL G+ Y I + + D + + G+ L + I +
Sbjct: 227 HILAARALLDKSPSVN-GQFYFITDDTPVRFFDFLSPLVKALGYCLPSSIKLPLFLSYFL 285
Query: 279 ----ELIRFIED--RPGHDR-RYAI-------DSSKIKSEIGWFPQENMESGLNKTVCWY 324
E++ F+ +P R R A+ K K E+G+ P ++E + +T+ W
Sbjct: 286 AYLLEIVYFLLRPYQPILTRFRVALLGVTRTFSIEKAKRELGYKPLVSLEEAIQRTIHWV 345
>gnl|CDD|31288 COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [Cell envelope
biogenesis, outer membrane].
Length = 281
Score = 78.0 bits (192), Expect = 4e-15
Identities = 68/314 (21%), Positives = 125/314 (39%), Gaps = 49/314 (15%)
Query: 1 MRLIVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVDIC 60
M++++TG G +G+ L R L + +V+ D+ ++DI
Sbjct: 1 MKILITGANGQLGTELRRAL--PGEFEVIATDRA---------------------ELDIT 37
Query: 61 DRECIRSALKEFQPDAIVNFAAESHVDRSILGADEFITTNIIGTFILLEETRLWWSCLSQ 120
D + + ++E +PD ++N AA + VD++ + N G L
Sbjct: 38 DPDAVLEVIRETRPDVVINAAAYTAVDKAESEPELAFAVNATGAENLARAAA-------- 89
Query: 121 DKKDQFRFLQISTDEVYGSLDKGLFSEDMPYNPSSPYSATKASSDYLVLAWGHTYGIPVL 180
+ R + ISTD V+ G + E NP + Y +K + + V A G + I +
Sbjct: 90 --EVGARLVHISTDYVFDGEKGGPYKETDTPNPLNVYGRSKLAGEEAVRAAGPRHLI-LR 146
Query: 181 LSNCSNNYGPYHFPEKLIPLAITRMIEGSHVFLYGDGQNVRDWLYVEDHVRALYLVLKKG 240
S YG +F + ++ LA EG + + D Y ED A+ +L+K
Sbjct: 147 TSWVYGEYGN-NFVKTMLRLA----KEGKELKVVDD--QYGSPTYTEDLADAILELLEKE 199
Query: 241 RIGERYNIGGNNERKNIDI---VFEIGFLLDALIPKSYSHTELIRFIEDRPGHDRRYAID 297
+ G Y++ + E + +FE +D + + + E RP + +D
Sbjct: 200 KEGGVYHLVNSGECSWYEFAKAIFEE-AGVDGEVIEPIASAEYPTPA-KRPANSS---LD 254
Query: 298 SSKIKSEIGWFPQE 311
+ K++ G E
Sbjct: 255 TKKLEKAFGLSLPE 268
>gnl|CDD|144605 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogenase/isomerase
family. The enzyme 3 beta-hydroxysteroid
dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD)
catalyses the oxidation and isomerisation of 5-ene-3
beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid
precursors into the corresponding 4-ene-ketosteroids
necessary for the formation of all classes of steroid
hormones.
Length = 280
Score = 76.6 bits (189), Expect = 9e-15
Identities = 61/245 (24%), Positives = 103/245 (42%), Gaps = 33/245 (13%)
Query: 4 IVTGGAGFIGSALCRYLVN-DLKIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVDICDR 62
+VTGG GF+G + R L+ +V V D + L++ S+ + ++++ D+ D+
Sbjct: 1 LVTGGGGFLGRHIVRLLLREGELQEVRVFDL---RFSPELLEDFSKLQVITYIEGDVTDK 57
Query: 63 ECIRSALKEFQPDAIVNFAAESHVDRSILGADEFITTNIIGTFILLEETRLWWSCLSQDK 122
+ +R AL+ D +++ AA V D + N+ GT +L+ +C+
Sbjct: 58 QDLRRALQGS--DVVIHTAAIIDV-FGKAYRDTIMKVNVKGTQNVLD------ACVKAGV 108
Query: 123 KDQFRFLQISTDEVYGSLDKGLF----SEDMPY--NPSSPYSATKASSDYLVL-AWGHTY 175
+ + S+ EV G G E PY PY +KA ++ LVL A G T
Sbjct: 109 R---VLVYTSSMEVVGPNSYGQPIVNGDETTPYESTHQDPYPESKALAEKLVLKANGSTL 165
Query: 176 GIPVLLSNC----SNNYGPYHFPEKLIPLAITRMIEGSHVFLYGDGQNVRDWLYVED--- 228
L C + +G L P + + G F GD + D +YV +
Sbjct: 166 KNGGRLYTCALRPAGIFGEGD--PFLFPFLVRLLKNGLAKFRTGDKNVLSDRVYVGNVAW 223
Query: 229 -HVRA 232
H+ A
Sbjct: 224 AHILA 228
>gnl|CDD|31283 COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases
[Cell envelope biogenesis, outer membrane / Carbohydrate
transport and metabolism].
Length = 588
Score = 71.5 bits (175), Expect = 4e-13
Identities = 63/260 (24%), Positives = 106/260 (40%), Gaps = 51/260 (19%)
Query: 2 RLIVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNL--NSLKEISQSNLFSFLQVDI 59
++VTGG G IGS LCR ++ ++++ + Y L L+E F D+
Sbjct: 252 TVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDV 311
Query: 60 CDRECIRSALKEFQPDAIVNFAAESHVDRSILGADEFITTNIIGTFILLEETRLWWSCLS 119
DR+ + A++ + D + + AA HV +E I TN++GT + E + +
Sbjct: 312 RDRDRVERAMEGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAE------AAIK 365
Query: 120 QDKKDQFRFLQISTDEVYGSLDKGLFSEDMPYNPSSPYSATKASSDYLVLAWGHTYGIP- 178
K +F+ ISTD+ NP++ ATK ++ L A
Sbjct: 366 NGVK---KFVLISTDKA--------------VNPTNVMGATKRLAEKLFQAANRNVSGTG 408
Query: 179 ----------VLLSNCSNNYGPYHFPEKLIPLAITRMIEGSHVFLYGDGQNVRDWLYVED 228
VL S S +IPL ++ EG + + D R ++ + +
Sbjct: 409 TRFCVVRFGNVLGSRGS-----------VIPLFKKQIAEGGPLTV-TDPDMTRFFMTIPE 456
Query: 229 HVRALYLVLKKGRIGERYNI 248
V+ LVL+ G I + I
Sbjct: 457 AVQ---LVLQAGAIAKGGEI 473
>gnl|CDD|145720 pfam02719, Polysacc_synt_2, Polysaccharide biosynthesis protein.
This is a family of diverse bacterial polysaccharide
biosynthesis proteins including the CapD protein, WalL
protein mannosyl-transferase and several putative
epimerases (e.g. WbiI).
Length = 280
Score = 68.3 bits (168), Expect = 3e-12
Identities = 48/171 (28%), Positives = 77/171 (45%), Gaps = 31/171 (18%)
Query: 5 VTGGAGFIGSALCRYLVNDLKIQVLVI-----DKLTYAGNLNSLKEISQSNLFSFLQVDI 59
VTGG G IGS LCR ++ + +++ KL Y +E + L F+ D+
Sbjct: 3 VTGGGGSIGSELCRQIL-KFNPKKIILFSRDEFKL-YEIEQELREEYNDPKLRFFI-GDV 59
Query: 60 CDRECIRSALKEFQPDAIVNFAAESHVDRSILGADEFITTNIIGTFILLEETRLWWSCLS 119
DRE + A++E+ D + + AA HV E I TN++GT + E + +
Sbjct: 60 RDRERLERAMEEYGVDTVFHAAALKHVPLVEYNPMEAIKTNVLGTENVAE------AAIE 113
Query: 120 QDKKDQFRFLQISTDEVYGSLDKGLFSEDMPYNPSSPYSATKASSDYLVLA 170
+ +F+ IST DK + NP++ ATK ++ L A
Sbjct: 114 NGVE---KFVLIST-------DKAV-------NPTNVMGATKRLAEKLFQA 147
>gnl|CDD|113104 pfam04321, RmlD_sub_bind, RmlD substrate binding domain.
L-rhamnose is a saccharide required for the virulence of
some bacteria. Its precursor, dTDP-L-rhamnose, is
synthesized by four different enzymes the final one of
which is RmlD. The RmlD substrate binding domain is
responsible for binding a sugar nucleotide.
Length = 284
Score = 59.9 bits (146), Expect = 9e-10
Identities = 44/180 (24%), Positives = 75/180 (41%), Gaps = 43/180 (23%)
Query: 3 LIVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVDICDR 62
++VTG G +G L R L+ + ++V+ +D+ ++D+ D
Sbjct: 1 ILVTGANGQLGRELTR-LLAERGVEVVALDRP---------------------ELDLTDP 38
Query: 63 ECIRSALKEFQPDAIVNFAAESHVDRSILGADEFITTNIIGTFILLEETRLWWSCLSQDK 122
E + + ++E +PD +VN AA + VD++ + N +G L E
Sbjct: 39 EAVAALVREARPDVVVNAAAYTAVDKAESEPELAYAVNALGPGNLAEACA---------- 88
Query: 123 KDQFRFLQISTDEVYGSLDKGLFSEDMPYNPSSPYSATK---------ASSDYLVL--AW 171
+ ISTD V+ G + ED P P + Y TK A+ +L+L AW
Sbjct: 89 ARGAPLIHISTDYVFDGAKGGPYREDDPTGPLNVYGRTKLAGEQAVLAANPRHLILRTAW 148
>gnl|CDD|36644 KOG1431, KOG1431, KOG1431, GDP-L-fucose synthetase [Carbohydrate
transport and metabolism, Posttranslational
modification, protein turnover, chaperones].
Length = 315
Score = 55.0 bits (132), Expect = 3e-08
Identities = 63/341 (18%), Positives = 128/341 (37%), Gaps = 47/341 (13%)
Query: 1 MRLIVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVDIC 60
+++VTGG G +GSA+ + + + Q + + G+ + D+
Sbjct: 2 KKILVTGGTGLVGSAIVKVV----QEQGFDDENWVFIGSKD---------------ADLT 42
Query: 61 DRECIRSALKEFQPDAIVNFAAE-SHVDRSILGADEFITTNIIGTFILLEETRLWWSCLS 119
+ R+ + +P +++ AA + + +FI N L + S
Sbjct: 43 NLADTRALFESEKPTHVIHLAAMVGGLFHNNTYNLDFIRKN------LQINDNVLHSAHE 96
Query: 120 QDKKDQFRFLQ--ISTDEVYGSLDKGLFSEDMPYNPSSPYSATKASSDYLVLAWGHTYGI 177
K L I D+ +D+ + P+ + YS K D A+ +G
Sbjct: 97 HGVKKVVSCLSTCIFPDKTSYPIDETMVHNGPPHPSNFGYSYAKRMIDVQNQAYRQQHGR 156
Query: 178 PVLLSNCSNNYGP---YHFPEK--LIPLAITRM----IEGSHVF-LYGDGQNVRDWLYVE 227
+N +GP ++ PE ++P I R G+ ++G G +R ++Y +
Sbjct: 157 DYTSVIPTNVFGPHDNFN-PENSHVLPALIHRFHEAKRNGTDELTVWGSGSPLRQFIYSD 215
Query: 228 DHVRALYLVLKKGRIGERYNIGGNNERKNIDIVFEIGFLLDALIPKSYSHTELIRFIEDR 287
D VL++ E + E + I + ++ T + + +
Sbjct: 216 DLADLFIWVLREYEGVEPIILS-VGESDEVTI-----REAAEAVVEAVDFTGKLVWDTTK 269
Query: 288 PGHDRRYAIDSSKIKSEIGWFPQ-ENMESGLNKTVCWYLDN 327
+ +SK++S + + +E +++TV WYLDN
Sbjct: 270 SDGQFKKTASNSKLRS-LLPDFKFTPLEQAISETVQWYLDN 309
>gnl|CDD|31934 COG1748, LYS9, Saccharopine dehydrogenase and related proteins
[Amino acid transport and metabolism].
Length = 389
Score = 46.8 bits (111), Expect = 9e-06
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 1 MRLIVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNL--FSFLQVD 58
M I+ GAG +GS + L + +V + D+ + I++ LQVD
Sbjct: 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADR-----SKEKCARIAELIGGKVEALQVD 55
Query: 59 ICDRECIRSALKEFQPDAIVNFAAESHVDRSILGA 93
D + + + +K+F D ++N AA VD +IL A
Sbjct: 56 AADVDALVALIKDF--DLVIN-AAPPFVDLTILKA 87
>gnl|CDD|31231 COG1028, FabG, Dehydrogenases with different specificities (related
to short-chain alcohol dehydrogenases) [Secondary
metabolites biosynthesis, transport, and catabolism /
General function prediction only].
Length = 251
Score = 45.2 bits (106), Expect = 3e-05
Identities = 38/198 (19%), Positives = 69/198 (34%), Gaps = 34/198 (17%)
Query: 1 MRLIVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNL---FSFLQV 57
+VTG + IG A+ R L + +V+V + + +L + + +
Sbjct: 6 KVALVTGASSGIGRAIARALARE-GARVVVAARRSEEEAAEALAAAIKEAGGGRAAAVAA 64
Query: 58 DICD-RECIRSALKEF-----QPDAIVNFAAESHVDRSIL-----GADEFITTNIIGTFI 106
D+ D E + + + + D +VN A + D + D I N++G F
Sbjct: 65 DVSDDEESVEALVAAAEEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAF- 123
Query: 107 LLEETRLWWSCLSQDKKDQFRFLQISTDEVYGSLDKGLFSEDMPYNPSSPYSATKASSDY 166
L + L KK R + IS+ + + Y+A+KA+
Sbjct: 124 -----LLTRAALPLMKKQ--RIVNISS-----------VAGLGGPPGQAAYAASKAALIG 165
Query: 167 LVLAWGHTYGIPVLLSNC 184
L A + N
Sbjct: 166 LTKALALELAPRGIRVNA 183
>gnl|CDD|36715 KOG1502, KOG1502, KOG1502, Flavonol reductase/cinnamoyl-CoA
reductase [Defense mechanisms].
Length = 327
Score = 44.1 bits (104), Expect = 5e-05
Identities = 72/346 (20%), Positives = 121/346 (34%), Gaps = 48/346 (13%)
Query: 1 MRLIVTGGAGFIGSALC-RYLVNDLKIQVLVID-----KLTYAGNLNSLKEISQSNLFSF 54
++ VTG +GFIGS + L ++ V D K + L KE L F
Sbjct: 7 KKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKE----RLKLF 62
Query: 55 LQVDICDRECIRSALKEFQPDAIVNFAAESHVDRSILGADEFITTNIIGTFILLEETRLW 114
+ D+ D A+ D + + A+ D E I + GT +LE
Sbjct: 63 -KADLLDEGSFDKAIDGC--DGVFHTASPVDFDLEDP-EKELIDPAVKGTKNVLE----- 113
Query: 115 WSCLSQDKKDQFRFLQISTDEVYGSLDKGLFSEDMPYNPSSP----------YSATKASS 164
+C + K + ST V + + + S Y+ +K +
Sbjct: 114 -ACK-KTKSVKRVVYTSSTAAVRYNGPNIGENSVVDEESWSDLDFCRCKKLWYALSKTLA 171
Query: 165 DYLVLAWGHTYGIPVLLSNCSNNYGPYHFPE-KLIPLAITRMIEGSHVFLYGDGQN-VRD 222
+ + G+ ++ N +GP P A+ ++I+G L N
Sbjct: 172 EKAAWEFAKENGLDLVTINPGLVFGPGLQPSLNSSLNALLKLIKG----LAETYPNFWLA 227
Query: 223 WLYVEDHVRALYLVLKKGRIGERYNIGGNNERKNIDIVFEIGFLLDAL-IPKSYSHTELI 281
++ V D A L L+K RY G +I + L IPK
Sbjct: 228 FVDVRDVALAHVLALEKPSAKGRYICVGEV-VSIKEIADILRELFPDYPIPK-------- 278
Query: 282 RFIEDRPGHDRRYAIDSSKIKSEIGWFPQENMESGLNKTVCWYLDN 327
+ E+ G + + S K+KS G+ + +E L+ TV +
Sbjct: 279 KNAEEHEGFLTSFKVSSEKLKSLGGFKFR-PLEETLSDTVESLREK 323
>gnl|CDD|31287 COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase
[General function prediction only].
Length = 297
Score = 38.3 bits (89), Expect = 0.003
Identities = 54/277 (19%), Positives = 92/277 (33%), Gaps = 56/277 (20%)
Query: 3 LIVTGGAGFIGSALC-RYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVDICD 61
+++TGG G IG AL R ++ +L + NL+ L+ L
Sbjct: 1 ILITGGTGLIGRALTARLRKGGHQVTILTRRPPKASQNLH-----PNVTLWEGL------ 49
Query: 62 RECIRSALKEFQPDAIVNFAAESHVDR-------SILGADEFITTNIIGTFILLEETRLW 114
+ DA++N A E +R + TT + I ET+
Sbjct: 50 -----ADALTLGIDAVINLAGEPIAERRWTEKQKEEIRQSRINTTEKLVELIAASETK-- 102
Query: 115 WSCLSQDKKDQFRFLQISTDEVYGSLDKGLFSEDMPYNPSSPYSATKASSDYLVLAWGHT 174
+ S YG S D SP + L W
Sbjct: 103 ----------PKVLISASAVGYYGH------SGDRVVTEESPPGDDFLAQ--LCQDWEEE 144
Query: 175 ------YGIPVLLSNCSNNYGPYH-FPEKLIPLAITRMIEGSHVFLYGDGQNVRDWLYVE 227
G V+L P K++PL ++ G + G G+ W+++E
Sbjct: 145 ALQAQQLGTRVVLLRTGVVLSPDGGALGKMLPL--FKLGLGGKL---GSGRQWFSWIHIE 199
Query: 228 DHVRALYLVLKKGRIGERYNIGGNNERKNIDIVFEIG 264
D V A+ +L+ ++ +N+ N +N + +G
Sbjct: 200 DLVNAILFLLENEQLSGPFNLTAPNPVRNKEFAHALG 236
>gnl|CDD|143883 pfam00106, adh_short, short chain dehydrogenase. This family
contains a wide variety of dehydrogenases.
Length = 167
Score = 37.9 bits (89), Expect = 0.004
Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 19/124 (15%)
Query: 4 IVTGGAGFIGSALCRYLVNDLKIQVLVID----KLTYAGNLN-SLKEISQSNLFSFLQVD 58
++TGG G +G AL R+L + LV+ A L L+ + + D
Sbjct: 4 LITGGTGGLGLALARWLA-AEGARHLVLVSRRGDAPGAAELVAELEALGAE--VTVAACD 60
Query: 59 ICDRECIRSAL----KEFQP-DAIVNFAAESHVDRSI--LGADEF---ITTNIIGTFILL 108
+ DR+ + + L P D +V+ A D + L + F + + G + L
Sbjct: 61 VADRDALAALLAALPAALGPLDGVVHNAGVLD-DGPLEELTPERFERVLAPKVTGAWNLH 119
Query: 109 EETR 112
E T
Sbjct: 120 ELTL 123
>gnl|CDD|31046 COG0702, COG0702, Predicted nucleoside-diphosphate-sugar
epimerases [Cell envelope biogenesis, outer membrane /
Carbohydrate transport and metabolism].
Length = 275
Score = 38.0 bits (87), Expect = 0.004
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 1 MRLIVTGGAGFIGSALCRYLVND 23
M+++VTG GF+G A+ R L+
Sbjct: 1 MKILVTGATGFVGGAVVRELLAR 23
>gnl|CDD|36414 KOG1200, KOG1200, KOG1200, Mitochondrial/plastidial
beta-ketoacyl-ACP reductase [Lipid transport and
metabolism].
Length = 256
Score = 36.9 bits (85), Expect = 0.009
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 13/113 (11%)
Query: 4 IVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVDICDRE 63
VTGG+ IG A+ + L +V V D L A + ++ S D+
Sbjct: 18 AVTGGSSGIGRAIAQLLAKK-GARVAVAD-LDSAAAEATAGDLGGYGDHSAFSCDVSKAH 75
Query: 64 CIRSALKEFQ-----PDAIVNFAAESHVDRSILGA-----DEFITTNIIGTFI 106
+++ L+E + P +VN A + D +L D I N+ G F+
Sbjct: 76 DVQNTLEEMEKSLGTPSVLVNCAGITR-DGLLLRMKQEQWDSVIAVNLTGVFL 127
>gnl|CDD|36419 KOG1205, KOG1205, KOG1205, Predicted dehydrogenase [Secondary
metabolites biosynthesis, transport and catabolism].
Length = 282
Score = 36.1 bits (83), Expect = 0.016
Identities = 40/175 (22%), Positives = 63/175 (36%), Gaps = 38/175 (21%)
Query: 4 IVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQ-------SNLFSFLQ 56
++TG + IG AL L VLV A L+ +++ LQ
Sbjct: 16 LITGASSGIGEALAYELAKRGAKLVLV------ARRARRLERVAEELRKLGSLEKVLVLQ 69
Query: 57 VDICD----RECIRSALKEFQP-DAIVNFAAESHVDR----SILGADEFITTNIIGTFIL 107
+D+ D ++ + A++ F D +VN A S V I + TN+ GT L
Sbjct: 70 LDVSDEESVKKFVEWAIRHFGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYL 129
Query: 108 LEETRLWWSCLSQDKKDQFRFLQISTDEVYGSLDKGLFSEDMPYNPSSPYSATKA 162
T+ + + + IS+ MP S YSA+K
Sbjct: 130 ---TKAALPSMKKRNDG--HIVVISSIAGK-----------MPLPFRSIYSASKH 168
>gnl|CDD|146194 pfam03435, Saccharop_dh, Saccharopine dehydrogenase. This family
comprised of three structural domains that can not be
separated in the linear sequence. In some organisms this
enzyme is found as a bifunctional polypeptide with
lysine ketoglutarate reductase. The saccharopine
dehydrogenase can also function as a saccharopine
reductase.
Length = 384
Score = 35.4 bits (82), Expect = 0.028
Identities = 23/110 (20%), Positives = 46/110 (41%), Gaps = 19/110 (17%)
Query: 8 GAGFIGSALCRYLVNDLKI-QVLVIDKLTYAGNLNSLKEISQSNL---FSFLQVDICDRE 63
GAG +G + L + ++ V D+ +L + ++ L F + VD + E
Sbjct: 5 GAGGVGQGVAPLLARHGDVDEITVADR-----SLEKAQALAAPKLGLRFIAIAVDADNYE 59
Query: 64 CIRSALKEFQPDAIVNFAAESHVDRSIL------GADEFITTNIIGTFIL 107
+ + LKE D ++N A + ++L G ++ T+ + L
Sbjct: 60 ALAALLKEG--DLVIN-LAPPFLSLTVLKACIETGVH-YVDTSYLREAQL 105
>gnl|CDD|39371 KOG4169, KOG4169, KOG4169, 15-hydroxyprostaglandin dehydrogenase
and related dehydrogenases [Lipid transport and
metabolism, General function prediction only].
Length = 261
Score = 34.9 bits (80), Expect = 0.034
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 10/97 (10%)
Query: 4 IVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNS-LKEISQSNLFSFLQVDICDR 62
+VTGGAG IG A + L+ I+VLVID + L+ I+ S F++ D+ +R
Sbjct: 9 LVTGGAGGIGLATSKALLEK-GIKVLVIDDSEENPEAIAKLQAINPSVSVIFIKCDVTNR 67
Query: 63 ECIRSALKEF-----QPDAIVNFAA---ESHVDRSIL 91
+ +A + D ++N A + +R+I
Sbjct: 68 GDLEAAFDKILATFGTIDILINGAGILDDKDWERTIN 104
>gnl|CDD|36415 KOG1201, KOG1201, KOG1201, Hydroxysteroid 17-beta dehydrogenase 11
[Secondary metabolites biosynthesis, transport and
catabolism].
Length = 300
Score = 34.8 bits (80), Expect = 0.039
Identities = 27/114 (23%), Positives = 41/114 (35%), Gaps = 17/114 (14%)
Query: 4 IVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVDICDRE 63
++TGG +G + + LV+ + GN ++KEI + DI DRE
Sbjct: 42 LITGGGSGLGRLIALEFAK--RGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDRE 99
Query: 64 CIRSALKEFQ-----PDAIVNFAA-------ESHVDRSILGADEFITTNIIGTF 105
I K+ + D +VN A D I + N I F
Sbjct: 100 EIYRLAKKVKKEVGDVDILVNNAGIVTGKKLLDCSDEEI---QKTFDVNTIAHF 150
>gnl|CDD|33946 COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown
specificity [General function prediction only].
Length = 246
Score = 34.4 bits (79), Expect = 0.050
Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 12/111 (10%)
Query: 4 IVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVDICDRE 63
++TG + IG A R L +V++ + L +L + + L +D+ DR
Sbjct: 10 LITGASSGIGEATARALAEA-GAKVVLAAR--REERLEALADEIGAGAALALALDVTDRA 66
Query: 64 ----CIRSALKEFQP-DAIVNFAAESHVDR----SILGADEFITTNIIGTF 105
I + +EF D +VN A + D + D I TN+ G
Sbjct: 67 AVEAAIEALPEEFGRIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLL 117
>gnl|CDD|35944 KOG0725, KOG0725, KOG0725, Reductases with broad range of substrate
specificities [General function prediction only].
Length = 270
Score = 34.3 bits (78), Expect = 0.051
Identities = 25/121 (20%), Positives = 43/121 (35%), Gaps = 19/121 (15%)
Query: 4 IVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLF-----SFLQVD 58
+VTGG+ IG A+ L V+ L + + + D
Sbjct: 12 LVTGGSSGIGKAIALLLAKAGAKVVITGRSEE---RLEETAQELGGLGYTGGKVLAIVCD 68
Query: 59 ICDRECIR----SALKEFQ--PDAIVNFAAESHVDRSILG--ADEF---ITTNIIGTFIL 107
+ + A+++F D +VN A + SIL + F + TN+ G+
Sbjct: 69 VSKEVDVEKLVEFAVEKFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFC 128
Query: 108 L 108
L
Sbjct: 129 L 129
>gnl|CDD|31051 COG0707, MurG, UDP-N-acetylglucosamine:LPS N-acetylglucosamine
transferase [Cell envelope biogenesis, outer membrane].
Length = 357
Score = 28.7 bits (64), Expect = 2.2
Identities = 20/106 (18%), Positives = 31/106 (29%), Gaps = 34/106 (32%)
Query: 1 MRLIVTGGAG----FIGSALCRYLVNDLKIQVLVID--------------------KLTY 36
++++T G F AL L QV+V+
Sbjct: 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQYGIEFELIPSGG 60
Query: 37 AGNLNSLKEISQ--SNLFSFLQVDICDRECIRSALKEFQPDAIVNF 80
SLK + L LQ R LK+ +PD ++
Sbjct: 61 LRRKGSLKLLKAPFKLLKGVLQA--------RKILKKLKPDVVIGT 98
>gnl|CDD|57927 cd01856, YlqF, YlqF. Proteins of the YlqF family contain all
sequence motifs typical of the vast class of
P-loop-containing GTPases, but show a circular
permutation, with a G4-G1-G3 pattern of motifs as
opposed to the regular G1-G3-G4 pattern seen in most
GTPases. The YlqF subfamily is represented in a
phylogenetically diverse array of bacteria (including
gram-positive bacteria, proteobacteria, Synechocystis,
Borrelia, and Thermotoga) and in all eukaryotes..
Length = 171
Score = 28.7 bits (64), Expect = 2.4
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 255 KNIDIVFEIGFLLDALIPKSYSHTELIRFIEDRP 288
K +D+V E+ DA IP S + L + + ++P
Sbjct: 18 KLVDLVIEV---RDARIPLSSRNPLLEKILGNKP 48
>gnl|CDD|36422 KOG1208, KOG1208, KOG1208, Dehydrogenases with different
specificities (related to short-chain alcohol
dehydrogenases) [Secondary metabolites biosynthesis,
transport and catabolism].
Length = 314
Score = 28.8 bits (64), Expect = 2.7
Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 10/116 (8%)
Query: 4 IVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGN--LNSLKEISQSNLFSFLQVDICD 61
+VTG IG R L V++ + G +++ + +Q+D+
Sbjct: 39 LVTGATSGIGFETARELAL-RGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSS 97
Query: 62 RECIRSA----LKEFQP-DAIVNFAA--ESHVDRSILGADEFITTNIIGTFILLEE 110
+ +R K+ P D ++N A + G + TN +G F+L E
Sbjct: 98 LKSVRKFAEEFKKKEGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTEL 153
>gnl|CDD|37229 KOG2018, KOG2018, KOG2018, Predicted dinucleotide-utilizing enzyme
involved in molybdopterin and thiamine biosynthesis
[Posttranslational modification, protein turnover,
chaperones].
Length = 430
Score = 28.4 bits (63), Expect = 2.9
Identities = 20/100 (20%), Positives = 41/100 (41%), Gaps = 13/100 (13%)
Query: 4 IVTGGAGFIGSALCRYLVND--LKIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVDICD 61
+V GAG +GS + L+ KI+++ D++ SL +++ + + V
Sbjct: 77 VVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQV-------SLSSLNRHSCATLADVGTPK 129
Query: 62 RECIRSALKEFQP----DAIVNFAAESHVDRSILGADEFI 97
C++ + P DA S + + G +F+
Sbjct: 130 VMCLKKHFSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFV 169
>gnl|CDD|147080 pfam04738, Lant_dehyd_C, Lantibiotic dehydratase, C terminus.
Lantibiotics are ribosomally synthesized antimicrobial
agents derived from ribosomally synthesized peptides.
They are produced by bacteria of the Firmicutes phylum,
and include mutacin, subtilin, and nisin. Lantibiotic
peptides contain thioether bridges termed lanthionines
that are thought to be generated by dehydration of
serine and threonine residues followed by addition of
cysteine residues. This family constitutes the
C-terminus of the enzyme proposed to catalyse the
dehydration step.
Length = 500
Score = 28.5 bits (64), Expect = 3.1
Identities = 16/62 (25%), Positives = 19/62 (30%), Gaps = 9/62 (14%)
Query: 191 YHFPEKLIPLAITRMIEGSHVFLYGDGQNVRDWLYVEDHVRALYLVLKKGRIGERYNIGG 250
+I L + V D LYV LYLV K G G R
Sbjct: 325 PRLLGYVISLGEHSDKSDNRVIPLAD-------LYVGAEDDRLYLVSKSG--GRRVEPVS 375
Query: 251 NN 252
N+
Sbjct: 376 NH 377
>gnl|CDD|36656 KOG1443, KOG1443, KOG1443, Predicted integral membrane protein
[Function unknown].
Length = 349
Score = 28.3 bits (63), Expect = 3.5
Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 105 FILLEETRLWWSCLSQDKKDQFRFL----QISTDEVYGSLDKGLFSEDMPYNPSSPYSAT 160
F+ +R + C + + +++ + +LD GL + + Y S Y+ T
Sbjct: 57 FLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMT 116
Query: 161 KASSDYLVLAWGHTYGI 177
K+SS +L + + +
Sbjct: 117 KSSSILFILLFSLIFKL 133
>gnl|CDD|30648 COG0300, DltE, Short-chain dehydrogenases of various substrate
specificities [General function prediction only].
Length = 265
Score = 27.9 bits (62), Expect = 4.5
Identities = 27/121 (22%), Positives = 43/121 (35%), Gaps = 19/121 (15%)
Query: 1 MRLIVTGGAGFIGSALCRYLVNDLKIQVLV---IDKLTYAGNLNSLKEISQ--SNLFSFL 55
++TG + IG+ L + L +LV DKL KE+ +
Sbjct: 7 KTALITGASSGIGAELAKQLARRGYNLILVARREDKLE-----ALAKELEDKTGVEVEVI 61
Query: 56 QVDICDRECIRSALKE-----FQPDAIVNFA----AESHVDRSILGADEFITTNIIGTFI 106
D+ D E + E D +VN A ++ S+ +E I NI+
Sbjct: 62 PADLSDPEALERLEDELKERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTR 121
Query: 107 L 107
L
Sbjct: 122 L 122
>gnl|CDD|35743 KOG0523, KOG0523, KOG0523, Transketolase [Carbohydrate transport
and metabolism].
Length = 632
Score = 27.6 bits (61), Expect = 5.0
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 143 GLFSEDMPYNPSSPYSATKASSDYLVLAWGH 173
LF E M YNP+ PY + D VL+ GH
Sbjct: 45 VLFFEVMRYNPADPYW---FNRDRFVLSNGH 72
>gnl|CDD|145474 pfam02347, GDC-P, Glycine cleavage system P-protein. This family
consists of Glycine cleavage system P-proteins
EC:1.4.4.2 from bacterial, mammalian and plant sources.
The P protein is part of the glycine decarboxylase
multienzyme complex EC:2.1.2.10 (GDC) also annotated as
glycine cleavage system or glycine synthase. GDC
consists of four proteins P, H, L and T. The reaction
catalysed by this protein is:- Glycine + lipoylprotein
<=> S-aminomethyldihydrolipoylprotein + CO2.
Length = 429
Score = 27.7 bits (62), Expect = 5.2
Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 12/76 (15%)
Query: 179 VLLSNCSNNYGPYHFPEKLIPLAITRMIEGSHVFLYG----------DGQNVRDWLYVED 228
LL+N + Y YH P+ L I R I ++L D + D L +
Sbjct: 325 ALLANMAAMYAVYHGPKGL--KEIARRIHSLTLYLAKGLKKLAGHELDHDHFFDTLKITV 382
Query: 229 HVRALYLVLKKGRIGE 244
RA +LK+ G
Sbjct: 383 EDRAAEELLKRAEKGG 398
>gnl|CDD|36824 KOG1611, KOG1611, KOG1611, Predicted short chain-type
dehydrogenase [General function prediction only].
Length = 249
Score = 27.5 bits (61), Expect = 6.1
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 3 LIVTGGAGFIGSALCRYLVNDLKIQVLV--IDKLTYAGNLNSLKEISQSNLFSFLQVDIC 60
+ +TG IG L + L+ D I+V++ A +LK S S + +Q+D+
Sbjct: 6 VFITGANRGIGLGLVKELLKDKGIEVIIATARDPEKAATELALKSKSDSRV-HIIQLDVT 64
Query: 61 DRECIRSALKE 71
E I + ++E
Sbjct: 65 CDESIDNFVQE 75
>gnl|CDD|145418 pfam02254, TrkA_N, TrkA-N domain. This domain is found in a wide
variety of proteins. These protein include potassium
channels, phosphoesterases, and various other
transporters. This domain binds to NAD.
Length = 115
Score = 26.8 bits (60), Expect = 8.7
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 11/72 (15%)
Query: 8 GAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVDICDRECIRS 67
G G +G +L L V+VIDK + ++E+ + + D D E +
Sbjct: 5 GYGRVGRSLAEELREGG--PVVVIDK-----DPERVEEL-REEGVPVVVGDATDEEVLEE 56
Query: 68 A-LKEFQPDAIV 78
A +++ DA+V
Sbjct: 57 AGIEDA--DAVV 66
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.321 0.139 0.435
Gapped
Lambda K H
0.267 0.0704 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,553,222
Number of extensions: 245196
Number of successful extensions: 684
Number of sequences better than 10.0: 1
Number of HSP's gapped: 634
Number of HSP's successfully gapped: 53
Length of query: 358
Length of database: 6,263,737
Length adjustment: 95
Effective length of query: 263
Effective length of database: 4,210,882
Effective search space: 1107461966
Effective search space used: 1107461966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.2 bits)