RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780920|ref|YP_003065333.1| dTDP-glucose 4,6-dehydratase
[Candidatus Liberibacter asiaticus str. psy62]
(358 letters)
>gnl|CDD|130249 TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehydratase. This
protein is related to UDP-glucose 4-epimerase (GalE) and
likewise has an NAD cofactor.
Length = 317
Score = 477 bits (1230), Expect = e-135
Identities = 192/332 (57%), Positives = 238/332 (71%), Gaps = 17/332 (5%)
Query: 2 RLIVTGGAGFIGSALCRYLVNDLK-IQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVDIC 60
R++VTGGAGFIGS RY++N+ +V+V+DKLTYAGNL +L ++ + + F++ DI
Sbjct: 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIG 60
Query: 61 DRECIRSALKEFQPDAIVNFAAESHVDRSILGADEFITTNIIGTFILLEETRLWWSCLSQ 120
DRE + E QPDA+V+FAAESHVDRSI G FI TN++GT+ LLE R +W
Sbjct: 61 DRELVSRLFTEHQPDAVVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYW----- 115
Query: 121 DKKDQFRFLQISTDEVYGSLDKG-LFSEDMPYNPSSPYSATKASSDYLVLAWGHTYGIPV 179
+FRF ISTDEVYG L+KG F+E P PSSPYSA+KA+SD+LV A+ TYG+P
Sbjct: 116 ---HEFRFHHISTDEVYGDLEKGDAFTETTPLAPSSPYSASKAASDHLVRAYHRTYGLPA 172
Query: 180 LLSNCSNNYGPYHFPEKLIPLAITRMIEGSHVFLYGDGQNVRDWLYVEDHVRALYLVLKK 239
L++ CSNNYGPY FPEKLIPL IT + G + +YGDGQ VRDWLYVEDH RA+YLVL+K
Sbjct: 173 LITRCSNNYGPYQFPEKLIPLMITNALAGKPLPVYGDGQQVRDWLYVEDHCRAIYLVLEK 232
Query: 240 GRIGERYNIGGNNERKNIDIVFEIGFLLDALIPKSYSHTELIRFIEDRPGHDRRYAIDSS 299
GR+GE YNIGG NER N+++V I LL +LI +EDRPGHDRRYAID+S
Sbjct: 233 GRVGETYNIGGGNERTNLEVVETILELLG-------KDEDLITHVEDRPGHDRRYAIDAS 285
Query: 300 KIKSEIGWFPQENMESGLNKTVCWYLDNNWWW 331
KIK E+GW P+ E GL KTV WYLDN WWW
Sbjct: 286 KIKRELGWAPKYTFEEGLRKTVQWYLDNEWWW 317
>gnl|CDD|182230 PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; Provisional.
Length = 352
Score = 475 bits (1223), Expect = e-134
Identities = 195/340 (57%), Positives = 248/340 (72%), Gaps = 10/340 (2%)
Query: 1 MRLIVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVDIC 60
M+++VTGGAGFIGSA+ R+++N+ + V+ +DKLTYAGNL SL ++S S + F DIC
Sbjct: 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLADVSDSERYVFEHADIC 60
Query: 61 DRECIRSALKEFQPDAIVNFAAESHVDRSILGADEFITTNIIGTFILLEETRLWWSCLSQ 120
DR + + QPDA+++ AAESHVDRSI G FI TNI+GT++LLE R +WS L +
Sbjct: 61 DRAELDRIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDE 120
Query: 121 DKKDQFRFLQISTDEVYGSL----------DKGLFSEDMPYNPSSPYSATKASSDYLVLA 170
DKK+ FRF ISTDEVYG L + LF+E Y PSSPYSA+KASSD+LV A
Sbjct: 121 DKKNAFRFHHISTDEVYGDLPHPDEVENSEELPLFTETTAYAPSSPYSASKASSDHLVRA 180
Query: 171 WGHTYGIPVLLSNCSNNYGPYHFPEKLIPLAITRMIEGSHVFLYGDGQNVRDWLYVEDHV 230
W TYG+P +++NCSNNYGPYHFPEKLIPL I +EG + +YG G +RDWLYVEDH
Sbjct: 181 WLRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHA 240
Query: 231 RALYLVLKKGRIGERYNIGGNNERKNIDIVFEIGFLLDALIPKSYSHTELIRFIEDRPGH 290
RALY V+ +G+ GE YNIGG+NE+KN+D+V I LLD ++PK+ S+ E I ++ DRPGH
Sbjct: 241 RALYKVVTEGKAGETYNIGGHNEKKNLDVVLTICDLLDEIVPKATSYREQITYVADRPGH 300
Query: 291 DRRYAIDSSKIKSEIGWFPQENMESGLNKTVCWYLDNNWW 330
DRRYAID+SKI E+GW PQE ESG+ KTV WYL N W
Sbjct: 301 DRRYAIDASKISRELGWKPQETFESGIRKTVEWYLANTEW 340
>gnl|CDD|182313 PRK10217, PRK10217, dTDP-glucose 4,6-dehydratase; Provisional.
Length = 355
Score = 448 bits (1154), Expect = e-127
Identities = 198/339 (58%), Positives = 246/339 (72%), Gaps = 6/339 (1%)
Query: 2 RLIVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVDICD 61
++++TGGAGFIGSAL RY++N+ V+V+DKLTYAGNL SL ++QS F+F +VDICD
Sbjct: 3 KILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICD 62
Query: 62 RECIRSALKEFQPDAIVNFAAESHVDRSILGADEFITTNIIGTFILLEETRLWWSCLSQD 121
R + E QPD +++ AAESHVDRSI G FI TNI+GT+ LLE R +W+ L++D
Sbjct: 63 RAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTED 122
Query: 122 KKDQFRFLQISTDEVYGSLDKG--LFSEDMPYNPSSPYSATKASSDYLVLAWGHTYGIPV 179
KK FRF ISTDEVYG L F+E PY PSSPYSA+KASSD+LV AW TYG+P
Sbjct: 123 KKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPSSPYSASKASSDHLVRAWLRTYGLPT 182
Query: 180 LLSNCSNNYGPYHFPEKLIPLAITRMIEGSHVFLYGDGQNVRDWLYVEDHVRALYLVLKK 239
L++NCSNNYGPYHFPEKLIPL I + G + +YG+GQ +RDWLYVEDH RALY V
Sbjct: 183 LITNCSNNYGPYHFPEKLIPLMILNALAGKPLPVYGNGQQIRDWLYVEDHARALYCVATT 242
Query: 240 GRIGERYNIGGNNERKNIDIVFEIGFLLDALIPKS----YSHTELIRFIEDRPGHDRRYA 295
G++GE YNIGG+NERKN+D+V I LL+ L P + +LI F+ DRPGHD RYA
Sbjct: 243 GKVGETYNIGGHNERKNLDVVETICELLEELAPNKPQGVAHYRDLITFVADRPGHDLRYA 302
Query: 296 IDSSKIKSEIGWFPQENMESGLNKTVCWYLDNNWWWRPL 334
ID+SKI E+GW PQE ESG+ KTV WYL N WW+ +
Sbjct: 303 IDASKIARELGWLPQETFESGMRKTVQWYLANESWWKQV 341
>gnl|CDD|177902 PLN02260, PLN02260, probable rhamnose biosynthetic enzyme.
Length = 668
Score = 254 bits (651), Expect = 2e-68
Identities = 136/335 (40%), Positives = 192/335 (57%), Gaps = 23/335 (6%)
Query: 3 LIVTGGAGFIGSALCRYLVN---DLKIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVDI 59
+++TG AGFI S + L+ D KI VL DKL Y NL +L S F F++ DI
Sbjct: 9 ILITGAAGFIASHVANRLIRNYPDYKIVVL--DKLDYCSNLKNLNPSKSSPNFKFVKGDI 66
Query: 60 CDRECIRSALKEFQPDAIVNFAAESHVDRSILGADEFITTNIIGTFILLEETRLWWSCLS 119
+ + L D I++FAA++HVD S + EF NI GT +LLE ++
Sbjct: 67 ASADLVNYLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKV----TG 122
Query: 120 QDKKDQFRFLQISTDEVYGSLDKGLF---SEDMPYNPSSPYSATKASSDYLVLAWGHTYG 176
Q + RF+ +STDEVYG D+ E P++PYSATKA ++ LV+A+G +YG
Sbjct: 123 QIR----RFIHVSTDEVYGETDEDADVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYG 178
Query: 177 IPVLLSNCSNNYGPYHFPEKLIPLAITRMIEGSHVFLYGDGQNVRDWLYVEDHVRALYLV 236
+PV+ + +N YGP FPEKLIP I ++G + ++GDG NVR +LY ED A +V
Sbjct: 179 LPVITTRGNNVYGPNQFPEKLIPKFILLAMQGKPLPIHGDGSNVRSYLYCEDVAEAFEVV 238
Query: 237 LKKGRIGERYNIGGNNERKNIDIVFEIGFLLDALIPKSYSHTELIRFIEDRPGHDRRYAI 296
L KG +G YNIG ER+ ID+ +I L KS I+F+E+RP +D+RY +
Sbjct: 239 LHKGEVGHVYNIGTKKERRVIDVAKDICKLFGLDPEKS------IKFVENRPFNDQRYFL 292
Query: 297 DSSKIKSEIGWFPQENMESGLNKTVCWYLDNNWWW 331
D K+K ++GW + + E GL KT+ WY N WW
Sbjct: 293 DDQKLK-KLGWQERTSWEEGLKKTMEWYTSNPDWW 326
>gnl|CDD|130247 TIGR01179, galE, UDP-glucose-4-epimerase. This enzyme
interconverts UDP-glucose and UDP-galactose. A set of
related proteins, some of which are tentatively
identified as UDP-glucose-4-epimerase in Thermotoga
maritima, Bacillus halodurans, and several archaea, but
deeply branched from this set and lacking experimental
evidence, are excluded from this model and described
separately.
Length = 328
Score = 125 bits (315), Expect = 2e-29
Identities = 89/339 (26%), Positives = 149/339 (43%), Gaps = 55/339 (16%)
Query: 2 RLIVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVDICD 61
+++VTGGAG+IGS R L+ +V+V+D L+ G+ +LK + +F++ D+ D
Sbjct: 1 KILVTGGAGYIGSHTVRQLLESGH-EVVVLDNLS-NGSPEALKRGERITRVTFVEGDLRD 58
Query: 62 RECIRSALKEFQPDAIVNFAAESHVDRSILGADEFITTNIIGTFILLEETRLWWSCLSQD 121
RE + +E + DA+++FA V S+ ++ N++ T LLE +
Sbjct: 59 RELLDRLFEEHKIDAVIHFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQ--------- 109
Query: 122 KKDQFRFLQISTDEVYGSLDKGLFSEDMPYNPSSPYSATKASS-----DYLVLAWGHTYG 176
+ +F+ S+ VYG SED P P +PY +K S D G +Y
Sbjct: 110 QTGVKKFIFSSSAAVYGEPSSIPISEDSPLGPINPYGRSKLMSERILRDLSKADPGLSY- 168
Query: 177 IPVLL-------SNCSNNYGPYHFPE-KLIPLAI-TRMIEGSHVFLYG------DGQNVR 221
V+L ++ G LIP A + + + ++G DG VR
Sbjct: 169 --VILRYFNVAGADPEGTIGEDPPGITHLIPYACQVAVGKRDKLTIFGTDYPTPDGTCVR 226
Query: 222 DWLYVED----HVRALYLVLKKGRIGERYNIG---GNNERKNIDIVFEIGFLLDALIPKS 274
D+++V D H+ AL +L G YN+G G + + I+ ++
Sbjct: 227 DYIHVMDLADAHLAALEYLLNGGE-SHVYNLGYGQGFSVLEVIEAFKKV----------- 274
Query: 275 YSHTE-LIRFIEDRPGHDRRYAIDSSKIKSEIGWFPQEN 312
S + + RPG D+SKI+ E+GW P+
Sbjct: 275 -SGVDFPVELAPRRPGDPASLVADASKIRRELGWQPKYT 312
>gnl|CDD|162378 TIGR01472, gmd, GDP-mannose 4,6-dehydratase. Excluded from this
model are members of the clade that score poorly because
of highly dervied (phylogenetically long-branch)
sequences, e.g. Aneurinibacillus thermoaerophilus Gmd,
described as a bifunctional GDP-mannose
4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase
(PUBMED:11096116).
Length = 343
Score = 87.6 bits (217), Expect = 4e-18
Identities = 78/289 (26%), Positives = 132/289 (45%), Gaps = 34/289 (11%)
Query: 58 DICDRECIRSALKEFQPDAIVNFAAESHVDRSILGADEFITTNIIGTFILLEETRLWWSC 117
D+ D +R + E +P I N AA+SHV S + + IGT LLE R
Sbjct: 63 DLTDSSNLRRIIDEIKPTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVR----- 117
Query: 118 LSQDKKDQFRFLQISTDEVYGSLDKGLFSEDMPYNPSSPYSATKASSDYLVLAWGHTYGI 177
+ +F Q ST E+YG + + +E P+ P SPY+A K + ++ + + YG+
Sbjct: 118 -TLGLIKSVKFYQASTSELYGKVQEIPQNETTPFYPRSPYAAAKLYAHWITVNYREAYGL 176
Query: 178 ----PVLLSNCSNNYGPYHFPEKLIPLAITRMIEGSHVFLY-GDGQNVRDWLYVEDHVRA 232
+L ++ S G +F + I A ++ G LY G+ RDW + +D+V A
Sbjct: 177 FAVNGILFNHESPRRGE-NFVTRKITRAAAKIKLGLQEKLYLGNLDAKRDWGHAKDYVEA 235
Query: 233 LYLVLKKGRIGERYNIG---GNNERKNIDIVFEIGFLLDALIPKSYSHTELIRFIEDRPG 289
++L+L++ + + Y I ++ R+ +++ FE ++ L K E+ R E
Sbjct: 236 MWLMLQQDKPDD-YVIATGETHSVREFVEVSFE--YIGKTLNWKDKGINEVGRCKETGKV 292
Query: 290 H---DRRY---------AIDSSKIKSEIGWFPQENMESGLNKTVCWYLD 326
H D RY D++K K ++GW P E K V ++
Sbjct: 293 HVEIDPRYFRPTEVDLLLGDATKAKEKLGWKP----EVSFEKLVKEMVE 337
>gnl|CDD|178259 PLN02653, PLN02653, GDP-mannose 4,6-dehydratase.
Length = 340
Score = 83.7 bits (207), Expect = 7e-17
Identities = 55/187 (29%), Positives = 91/187 (48%), Gaps = 11/187 (5%)
Query: 58 DICDRECIRSALKEFQPDAIVNFAAESHVDRSILGADEFITTNIIGTFILLEETRLWWSC 117
D+ D +R L + +PD + N AA+SHV S D G LLE RL
Sbjct: 68 DLSDASSLRRWLDDIKPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRL---- 123
Query: 118 LSQDKKDQFRFLQISTDEVYGSLDKGLFSEDMPYNPSSPYSATKASSDYLVLAWGHTYGI 177
Q+ Q ++ Q + E+YGS SE P++P SPY+ K ++ + + + YG+
Sbjct: 124 HGQETGRQIKYYQAGSSEMYGSTPPPQ-SETTPFHPRSPYAVAKVAAHWYTVNYREAYGL 182
Query: 178 ----PVLLSNCSNNYGPYHFPEKLIPLAITRMIEGSHVFLY-GDGQNVRDWLYVEDHVRA 232
+L ++ S G +F + I A+ R+ G L+ G+ RDW + D+V A
Sbjct: 183 FACNGILFNHESPRRGE-NFVTRKITRAVGRIKVGLQKKLFLGNLDASRDWGFAGDYVEA 241
Query: 233 LYLVLKK 239
++L+L++
Sbjct: 242 MWLMLQQ 248
>gnl|CDD|177883 PLN02240, PLN02240, UDP-glucose 4-epimerase.
Length = 352
Score = 80.4 bits (199), Expect = 6e-16
Identities = 84/339 (24%), Positives = 145/339 (42%), Gaps = 57/339 (16%)
Query: 2 RLIVTGGAGFIGSALCRYLVNDLKIQVLVIDKL--TYAGNLNSLKEI--SQSNLFSFLQV 57
++VTGGAG+IGS L+ +V+VID L + L +KE+ + F +V
Sbjct: 7 TILVTGGAGYIGSHTVLQLLLA-GYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKV 65
Query: 58 DICDRECIRSALKEFQPDAIVNFAAESHVDRSILGADEFITTNIIGTFILLEETRLWWSC 117
D+ D+E + + DA+++FA V S+ + N++GT LLE
Sbjct: 66 DLRDKEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLE-------V 118
Query: 118 LSQDKKDQFRFLQISTDEVYGSLDKGLFSEDMPYNPSSPYSATK------------ASSD 165
+++ + F +T VYG ++ +E+ P + ++PY TK + +
Sbjct: 119 MAKHGCKKLVFSSSAT--VYGQPEEVPCTEEFPLSATNPYGRTKLFIEEICRDIHASDPE 176
Query: 166 YLVLAWGHTYGIPVLLSNCSNNYG--PYHFPEKLIP----LAITRMIEGSHVFLYG---- 215
+ ++ Y PV ++ S G P P L+P +A+ R + ++G
Sbjct: 177 WKIILL--RYFNPV-GAHPSGRIGEDPKGIPNNLMPYVQQVAVGRR---PELTVFGNDYP 230
Query: 216 --DGQNVRDWLYVED----HVRALYLVLKKGRIG-ERYNIGGNNERKNIDIVFEIGFLLD 268
DG VRD+++V D H+ AL + IG E YN+G +++V
Sbjct: 231 TKDGTGVRDYIHVMDLADGHIAALRKLFTDPDIGCEAYNLGTGKGTSVLEMVAAFEKASG 290
Query: 269 ALIPKSYSHTELIRFIEDRPGHDRRYAIDSSKIKSEIGW 307
IP ++ RPG + K + E+GW
Sbjct: 291 KKIP--------LKLAPRRPGDAEEVYASTEKAEKELGW 321
>gnl|CDD|165812 PLN02166, PLN02166, dTDP-glucose 4,6-dehydratase.
Length = 436
Score = 73.9 bits (181), Expect = 6e-14
Identities = 83/328 (25%), Positives = 142/328 (43%), Gaps = 35/328 (10%)
Query: 1 MRLIVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVDIC 60
+R++VTGGAGF+GS L L+ +V+VID + G +L + + F ++ D+
Sbjct: 121 LRIVVTGGAGFVGSHLVDKLIGRGD-EVIVIDNF-FTGRKENLVHLFGNPRFELIRHDV- 177
Query: 61 DRECIRSALKEFQPDAIVNFAAESHVDRSILGADEFITTNIIGTFILLEETRLWWSCLSQ 120
+ L E D I + A + + I TN++GT + L
Sbjct: 178 ----VEPILLEV--DQIYHLACPASPVHYKYNPVKTIKTNVMGTL----------NMLGL 221
Query: 121 DKKDQFRFLQISTDEVYGS-----LDKGLFSEDMPYNPSSPYSATKASSDYLVLAWGHTY 175
K+ RFL ST EVYG + + P S Y K +++ L + +
Sbjct: 222 AKRVGARFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLAMDYHRGA 281
Query: 176 GIPVLLSNCSNNYGPYHFPE--KLIPLAITRMIEGSHVFLYGDGQNVRDWLYVEDHVRAL 233
G+ V ++ N YGP + +++ + + I + +YGDG+ R + YV D V L
Sbjct: 282 GVEVRIARIFNTYGPRMCLDDGRVVSNFVAQTIRKQPMTVYGDGKQTRSFQYVSDLVDGL 341
Query: 234 YLVLKKGRIGERYNIGGNNERKNIDIVFEIGFLLDALIPKSYSHTELIRFIEDRPGHDRR 293
+++ +G +N+G E +++ + +D S + E D P H R+
Sbjct: 342 VALMEGEHVGP-FNLGNPGEFTMLELAEVVKETID-----SSATIEFKPNTADDP-HKRK 394
Query: 294 YAIDSSKIKSEIGWFPQENMESGLNKTV 321
D SK K + W P+ ++ GL V
Sbjct: 395 --PDISKAKELLNWEPKISLREGLPLMV 420
>gnl|CDD|162758 TIGR02197, heptose_epim, ADP-L-glycero-D-manno-heptose-6-epimerase.
This family consists of examples of
ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme
involved in biosynthesis of the inner core of
lipopolysaccharide (LPS) for Gram-negative bacteria.
This enzyme is homologous to UDP-glucose 4-epimerase
(TIGR01179) and belongs to the NAD dependent
epimerase/dehydratase family (pfam01370).
Length = 314
Score = 72.7 bits (179), Expect = 1e-13
Identities = 85/352 (24%), Positives = 135/352 (38%), Gaps = 66/352 (18%)
Query: 3 LIVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLK--EISQSNLFSFLQVDIC 60
+IVTGGAGFIGS L + L +LV+D L +L I D
Sbjct: 1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGHKFLNLADLVI----------ADYI 50
Query: 61 DRECIRSALKE---FQPDAIVNFAAESHVDRSILGADEFITTNIIGTFILLEET------ 111
D+E L++ + +AI + A S TT G +++ E
Sbjct: 51 DKEDFLDRLEKGAFGKIEAIFHQGACSD------------TTETDGEYMM--ENNYQYSK 96
Query: 112 RLWWSCLSQDKKDQFRFLQISTDEVYGSLDKGLFSEDMPYNPSSPYSATKASSDYLVLAW 171
RL C + F+ S+ YG + G P + Y +K D V
Sbjct: 97 RLLDWCAEKGIP----FIYASSAATYGDGEAGFREGRELERPLNVYGYSKFLFDQYVRRR 152
Query: 172 GHTYGIPVLLSNCS--NNYGPYHF-PEKLIPLAI---TRMIEGSHVFL------YGDGQN 219
+ + N YGP + K+ +A ++ G +V L + DG+
Sbjct: 153 VLPEALSAQVVGLRYFNVYGPREYHKGKMASVAFHLFNQIKAGGNVKLFKSSEGFKDGEQ 212
Query: 220 VRDWLYVEDHVRALYLVLKKGRIGERYNIGGNNERKNIDIVFEIGFLLDALIPKSYSHTE 279
+RD++YV+D V +L+ G G +N+G R D+ DA+ K+ E
Sbjct: 213 LRDFVYVKDVVDVNLWLLENGVSG-IFNLGTGRARSFNDLA-------DAVF-KALGKDE 263
Query: 280 LIRFIEDRPGHDR-RY----AIDSSKIKSEIGWFPQENMESGLNKTVCWYLD 326
I +I P R +Y D +K+++ + P +E G+ V W L
Sbjct: 264 KIEYI-PMPEALRGKYQYFTQADITKLRAAGYYGPFTTLEEGVKDYVQWLLA 314
>gnl|CDD|177856 PLN02206, PLN02206, UDP-glucuronate decarboxylase.
Length = 442
Score = 66.9 bits (163), Expect = 7e-12
Identities = 82/332 (24%), Positives = 138/332 (41%), Gaps = 51/332 (15%)
Query: 1 MRLIVTGGAGFIGSALCRYLV--NDLKIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVD 58
+R++VTGGAGF+GS L L+ D V+V+D N + S N
Sbjct: 120 LRVVVTGGAGFVGSHLVDRLMARGD---SVIVVDNFFTGRKENVMHHFSNPNF------- 169
Query: 59 ICDRECIRSALKE---FQPDAIVNFAAESHVDRSILGADEFITTNIIGTFILLEETRLWW 115
E IR + E + D I + A + + I TN++GT
Sbjct: 170 ----ELIRHDVVEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTL---------- 215
Query: 116 SCLSQDKKDQFRFLQISTDEVYGSLDKGLFSEDM-----PYNPSSPYSATKASSDYLVLA 170
+ L K+ RFL ST EVYG + E P S Y K +++ L +
Sbjct: 216 NMLGLAKRVGARFLLTSTSEVYGDPLQHPQVETYWGNVNPIGVRSCYDEGKRTAETLTMD 275
Query: 171 WGHTYGIPVLLSNCSNNYGPYHFPE--KLIPLAITRMIEGSHVFLYGDGQNVRDWLYVED 228
+ + V ++ N YGP + +++ + + + + +YGDG+ R + +V D
Sbjct: 276 YHRGANVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSD 335
Query: 229 HVRALYLVLKKGRIGERYNIGGNNERKNIDIVFEIGFLLDALIPKSYSHTELIRF---IE 285
V L +++ +G +N+G E ++ L ++ ++ I F E
Sbjct: 336 LVEGLMRLMEGEHVGP-FNLGNPGEFTMLE--------LAKVVQETIDPNAKIEFRPNTE 386
Query: 286 DRPGHDRRYAIDSSKIKSEIGWFPQENMESGL 317
D P H R+ D +K K +GW P+ ++ GL
Sbjct: 387 DDP-HKRK--PDITKAKELLGWEPKVSLRQGL 415
>gnl|CDD|185103 PRK15181, PRK15181, Vi polysaccharide biosynthesis protein TviC;
Provisional.
Length = 348
Score = 67.0 bits (163), Expect = 8e-12
Identities = 83/339 (24%), Positives = 146/339 (43%), Gaps = 26/339 (7%)
Query: 2 RLIVTGGAGFIGSALCRYLVNDLKIQVLVIDKLT--YAGNLNSLKEI---SQSNLFSFLQ 56
R ++TG AGFIGS L L+ L V+ +D + Y NL+ ++ Q + F F+Q
Sbjct: 17 RWLITGVAGFIGSGLLEELLF-LNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQ 75
Query: 57 VDICDRECIRSALKEFQPDAIVNFAAESHVDRSILGADEFITTNIIGTFILLEETRLWWS 116
DI + A K D +++ AA V RS+ + NI G +L R
Sbjct: 76 GDIRKFTDCQKACKNV--DYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAAR---- 129
Query: 117 CLSQDKKDQFRFLQISTDEVYGSLDKGLFSEDMPYNPSSPYSATKASSDYLVLAWGHTYG 176
F ++ YG E+ P SPY+ TK ++ + +Y
Sbjct: 130 -----DAHVSSFTYAASSSTYGDHPDLPKIEERIGRPLSPYAVTKYVNELYADVFARSYE 184
Query: 177 IPVLLSNCSNNYGPYHFP----EKLIPLAITRMIEGSHVFLYGDGQNVRDWLYVEDHVRA 232
+ N +G P +IP I +++ +++ GDG RD+ Y+E+ ++A
Sbjct: 185 FNAIGLRYFNVFGRRQNPNGAYSAVIPRWILSLLKDEPIYINGDGSTSRDFCYIENVIQA 244
Query: 233 LYLVLKKGRIGER---YNIGGNNERKNIDIVFEIGFLLDALIPKSYSHTELIRFIEDRPG 289
L + + YN+ + ++ + I L+ L S E I + + R G
Sbjct: 245 NLLSATTNDLASKNKVYNVAVGDRTSLNELYYLIRDGLN-LWRNEQSRAEPI-YKDFRDG 302
Query: 290 HDRRYAIDSSKIKSEIGWFPQENMESGLNKTVCWYLDNN 328
+ D +KIK+ + + P+ +++ GL +T+ WY+D +
Sbjct: 303 DVKHSQADITKIKTFLSYEPEFDIKEGLKQTLKWYIDKH 341
>gnl|CDD|182639 PRK10675, PRK10675, UDP-galactose-4-epimerase; Provisional.
Length = 338
Score = 64.5 bits (157), Expect = 4e-11
Identities = 85/334 (25%), Positives = 140/334 (41%), Gaps = 49/334 (14%)
Query: 1 MRLIVTGGAGFIGSALCRYLVNDLKIQVLVIDKL--TYAGNLNSLKEISQSNLFSFLQVD 58
MR++VTGG+G+IGS C L+ + V+++D L + L ++ + + +F++ D
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQN-GHDVVILDNLCNSKRSVLPVIERLGGKHP-TFVEGD 58
Query: 59 ICDRECIRSALKEFQPDAIVNFAAESHVDRSILGADEFITTNIIGTFILLEETRLWWSCL 118
I + + L + D +++FA V S+ E+ N+ GT L+ R
Sbjct: 59 IRNEALLTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMR------ 112
Query: 119 SQDKKDQFRFLQISTDEVYGSLDKGLFSEDMPY-NPSSPYSATKASSDYLVL-------A 170
+ + S+ VYG K + E P P SPY +K + ++
Sbjct: 113 ---AANVKNLIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPD 169
Query: 171 WGHT---YGIPVLLSNCSNNYG--PYHFPEKLIP----LAITR----MIEGSHVFLYGDG 217
W Y PV ++ S + G P P L+P +A+ R I G+ + DG
Sbjct: 170 WSIALLRYFNPV-GAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGND-YPTEDG 227
Query: 218 QNVRDWLYVED----HVRALYLVLKKGRIGERYNIGGNNERKNIDIVFEIGFLLDALIPK 273
VRD+++V D HV A+ + K + YN+G +D+V F P
Sbjct: 228 TGVRDYIHVMDLADGHVAAMEKLANKPGV-HIYNLGAGVGSSVLDVV--NAFSKACGKPV 284
Query: 274 SYSHTELIRFIEDRPGHDRRYAIDSSKIKSEIGW 307
+Y F R G Y D+SK E+ W
Sbjct: 285 NY------HFAPRREGDLPAYWADASKADRELNW 312
>gnl|CDD|163279 TIGR03466, HpnA, hopanoid-associated sugar epimerase. The
sequences in this family are members of the pfam01370
superfamily of NAD-dependent epimerases and dehydratases
typically acting on nucleotide-sugar substrates. The
genes of the family modeled here are generally in the
same locus with genes involved in the biosynthesis and
elaboration of hopene, the cyclization product of the
polyisoprenoid squalene.
Length = 328
Score = 60.4 bits (147), Expect = 7e-10
Identities = 73/268 (27%), Positives = 110/268 (41%), Gaps = 51/268 (19%)
Query: 1 MRLIVTGGAGFIGSALCRYLVND-LKIQVLVIDKLTYAGNLNSLK-EISQSNLFSFLQVD 58
M+++VTG GF+GSA+ R L+ +++VLV + NL L EI + D
Sbjct: 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPT-SDRRNLEGLDVEIVEG--------D 51
Query: 59 ICDRECIRSALKEFQPDAIVNFAAESHVDRSILGAD--EFITTNIIGTFILLEETRLWWS 116
+ D +R A+ + A+ + AA D + D E N+ GT LL
Sbjct: 52 LRDPASLRKAVAGCR--ALFHVAA----DYRLWAPDPEEMYAANVEGTRNLLRAAL---- 101
Query: 117 CLSQDKKDQFRFLQISTDEVYGSLDKGLFS-EDMPYNPSS---PYSATKASSDYLVLAWG 172
+ R + S+ G G + E P + Y +K ++ L
Sbjct: 102 -----EAGVERVVYTSSVATLGVRGDGTPADETTPSSLDDMIGHYKRSKFLAEQAALEMA 156
Query: 173 HTYGIPVLLSNCSNNYGPYHFPEKLIPLAITRMIEGSHV-FLYGD-------GQNVRDWL 224
G+PV++ N S GP + P R+I V FL G G N+
Sbjct: 157 AEKGLPVVIVNPSTPIGPR----DIKPTPTGRII----VDFLNGKMPAYVDTGLNLVH-- 206
Query: 225 YVEDHVRALYLVLKKGRIGERYNIGGNN 252
V+D L L++GRIGERY +GG N
Sbjct: 207 -VDDVAEGHLLALERGRIGERYILGGEN 233
>gnl|CDD|162953 TIGR02622, CDP_4_6_dhtase, CDP-glucose 4,6-dehydratase. Members of
this protein family are CDP-glucose 4,6-dehydratase from
a variety of Gram-negative and Gram-positive bacteria.
Members typically are encoded next to a gene that
encodes a glucose-1-phosphate cytidylyltransferase,
which produces the substrate, CDP-D-glucose, used by
this enzyme to produce CDP-4-keto-6-deoxyglucose.
Length = 349
Score = 60.0 bits (146), Expect = 1e-09
Identities = 87/348 (25%), Positives = 152/348 (43%), Gaps = 50/348 (14%)
Query: 2 RLIVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQV---- 57
+++VTG GF GS L +L +L +V SL + NLF L +
Sbjct: 6 KVLVTGHTGFKGSWLSLWL-LELGAEVYGY----------SLDPPTSPNLFELLNLAKKI 54
Query: 58 -----DICDRECIRSALKEFQPDAIVNFAAESHVDRSILGADEFITTNIIGTFILLEETR 112
DI D +R A+ EF+P+ + + AA+ V +S E TN++GT LLE R
Sbjct: 55 EDHFGDIRDAAKLRKAIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIR 114
Query: 113 LWWSCLSQDKKDQFRFLQISTDEVYGSLDKGL-FSEDMPYNPSSPYSATKASSDYLVLAW 171
K + +++D+ Y + + + E P PYS++KA ++ ++ ++
Sbjct: 115 -----AIGSVK---AVVNVTSDKCYRNDEWVWGYRETDPLGGHDPYSSSKACAELVIASY 166
Query: 172 GHTY-------GIPVLLSNCSNNYGPYHFPE-KLIPLAITRMIEGSHVFLYGDGQNVRDW 223
++ GI + + N G + E +LIP I R + + + + R W
Sbjct: 167 RSSFFGVANFHGIKIASARAGNVIGGGDWAEDRLIPDVI-RAFSSNKIVIIRNPDATRPW 225
Query: 224 LYVEDHVRALYLVLK----KGRIG--ERYNIGGNNERKNIDIVFEIGFLLDALIPKSYSH 277
+V + + + YL+L G+ +N G + V E ++DAL
Sbjct: 226 QHVLEPL-SGYLLLAEKLFTGQAEFAGAWNFGPRAS--DNARVVE--LVVDALEFWWGDD 280
Query: 278 TELIRFIEDRPGHDRRY-AIDSSKIKSEIGWFPQENMESGLNKTVCWY 324
E + H+ R +DSSK ++ +GW P+ +E +++TV WY
Sbjct: 281 AEWEDDSDLNHPHEARLLKLDSSKARTLLGWHPRWGLEEAVSRTVDWY 328
>gnl|CDD|162255 TIGR01214, rmlD, dTDP-4-dehydrorhamnose reductase. This enzyme
catalyzes the last of 4 steps in making dTDP-rhamnose, a
precursor of LPS core antigen, O-antigen, etc.
Length = 287
Score = 57.8 bits (140), Expect = 4e-09
Identities = 39/171 (22%), Positives = 68/171 (39%), Gaps = 32/171 (18%)
Query: 2 RLIVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVDICD 61
R+++TG G +G L + L + ++ V + Q+D+ D
Sbjct: 1 RILITGANGQLGRELVQQLSPEGRVVVALTSS----------------------QLDLTD 38
Query: 62 RECIRSALKEFQPDAIVNFAAESHVDRSILGADEFITTNIIGTFILLEETRLWWSCLSQD 121
E + L+ +PDA+VN AA + VD + ++ N + L
Sbjct: 39 PEALERLLRAIRPDAVVNTAAYTDVDGAESDPEKAFAVNALAPQNLARAA---------- 88
Query: 122 KKDQFRFLQISTDEVYGSLDKGLFSEDMPYNPSSPYSATKASSDYLVLAWG 172
+ R + ISTD V+ K + ED NP + Y +K + + + A G
Sbjct: 89 ARHGARLVHISTDYVFDGEGKRPYREDDATNPLNVYGQSKLAGEQAIRAAG 139
>gnl|CDD|178298 PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase.
Length = 370
Score = 50.6 bits (121), Expect = 6e-07
Identities = 83/343 (24%), Positives = 137/343 (39%), Gaps = 56/343 (16%)
Query: 1 MRLIVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLF--SFLQVD 58
+R+ +TG GFI S + R L + ++ D + N E ++F F VD
Sbjct: 22 LRICITGAGGFIASHIARRLKAE-GHYIIASD---WKKN-----EHMSEDMFCHEFHLVD 72
Query: 59 ICDRECIRSALKEFQPDAIVNFAAESHVDRSILGADEFITTNIIGTFILLEETRLWWSCL 118
+ E K D + N AA+ +G FI +N + I+ T + ++ L
Sbjct: 73 LRVMENCLKVTKGV--DHVFNLAAD-------MGGMGFIQSN--HSVIMYNNTMISFNML 121
Query: 119 SQDKKDQF-RFLQISTDEVYG-----SLDKGLFSEDM-PYNPSSPYSATKASSDYLVLAW 171
+ + RF S+ +Y + L D P P Y K +++ L +
Sbjct: 122 EAARINGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKHY 181
Query: 172 GHTYGIPVLLSNCSNNYGPYHF----PEKLIPLAITR--MIEGSHVFLYGDGQNVRDWLY 225
+GI + N YGP+ EK P A R + ++GDG+ R + +
Sbjct: 182 TKDFGIECRIGRFHNIYGPFGTWKGGREK-APAAFCRKALTSTDEFEMWGDGKQTRSFTF 240
Query: 226 VEDHVRALYLVLKKGRIGERYNIGGN-----NERKNIDIVFEIGFLLDALIPKSYSHTEL 280
+++ V + L L K E NIG + NE I + FE + +P
Sbjct: 241 IDECVEGV-LRLTKSDFREPVNIGSDEMVSMNEMAEIALSFE-----NKKLP-------- 286
Query: 281 IRFIEDRPGHDRRYAIDSSKIKSEIGWFPQENMESGLNKTVCW 323
I+ I G R + D++ IK ++GW P ++ GL T W
Sbjct: 287 IKHIPGPEGVRGRNS-DNTLIKEKLGWAPTMRLKDGLRITYFW 328
>gnl|CDD|178184 PLN02572, PLN02572, UDP-sulfoquinovose synthase.
Length = 442
Score = 48.3 bits (115), Expect = 3e-06
Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 27/130 (20%)
Query: 2 RLIVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAG-----NLNSL------------- 43
+++V GG G+ G A +L + +V ++D L L+SL
Sbjct: 49 KVMVIGGDGYCGWATALHL-SKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRW 107
Query: 44 KEISQSNLFSFLQVDICDRECIRSALKEFQPDAIVNFAAE-----SHVDRSILGADEFIT 98
KE+S + DICD E + A K F+PDA+V+F + S +DRS A
Sbjct: 108 KEVSGKEI-ELYVGDICDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRS--RAVFTQH 164
Query: 99 TNIIGTFILL 108
N+IGT +L
Sbjct: 165 NNVIGTLNVL 174
>gnl|CDD|149205 pfam07993, NAD_binding_4, Male sterility protein. This family
represents the C-terminal region of the male sterility
protein in a number of arabidopsis and drosophila. A
sequence-related jojoba acyl CoA reductase is also
included.
Length = 245
Score = 46.4 bits (111), Expect = 1e-05
Identities = 42/200 (21%), Positives = 75/200 (37%), Gaps = 39/200 (19%)
Query: 5 VTGGAGFIGSALCRYLVN---DLKIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQV---- 57
+TG GF+G L L+ ++KI LV K + +E+ + LF L+
Sbjct: 1 LTGATGFLGKVLLEKLLRSCPEVKIYCLVRAKDGESALERLRQELLKYGLFDRLKALERI 60
Query: 58 -----DICDREC-IRSALKEF---QPDAIVNFAAESHVDRSILGADEFITTNIIGTFILL 108
D+ + + + + D I++ AA + + TN++GT +L
Sbjct: 61 IPVAGDLSEPNLGLSDEDFQELAEEVDVIIHNAATVNFVEPY---SDLRATNVLGTREVL 117
Query: 109 EETRLWWSCLSQDKKDQFRFLQIST----DEVYGSLDKGLFSE-----DMPYNPSSPYSA 159
RL K F +ST E G L++ + + + Y+
Sbjct: 118 ---RL---AKQMKKL---PFHHVSTAYVNGERGGLLEEKPYPLDEDEPALLGGLPNGYTQ 168
Query: 160 TKASSDYLVLAWGHTYGIPV 179
+K ++ LV G+PV
Sbjct: 169 SKWLAEQLVREAAG--GLPV 186
>gnl|CDD|132628 TIGR03589, PseB, UDP-N-acetylglucosamine 4,6-dehydratase. This
enzyme catalyzes the first step in the biosynthesis of
pseudaminic acid, the conversion of
UDP-N-acetylglucosamine to
UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences
are members of the broader pfam01073 (3-beta
hydroxysteroid dehydrogenase/isomerase family) family.
Length = 324
Score = 45.5 bits (108), Expect = 2e-05
Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 36/173 (20%)
Query: 3 LIVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQV----- 57
+++TGG G G A L+ + + ++I Y+ + LK+ F +
Sbjct: 7 ILITGGTGSFGKAFISRLLENYNPKKIII----YS--RDELKQWEMQQKFPAPCLRFFIG 60
Query: 58 DICDRECIRSALKEFQPDAIVNFAAESHVDRSILGADEFITTNIIGTFILLEETRLWWSC 117
D+ D+E + AL+ D +V+ AA V + E I TNI G +++ +
Sbjct: 61 DVRDKERLTRALRGV--DYVVHAAALKQVPAAEYNPFECIRTNINGAQNVID------AA 112
Query: 118 LSQDKKDQFRFLQISTDEVYGSLDKGLFSEDMPYNPSSPYSATKASSDYLVLA 170
+ K R + +STD+ NP + Y ATK +SD L +A
Sbjct: 113 IDNGVK---RVVALSTDKAA--------------NPINLYGATKLASDKLFVA 148
>gnl|CDD|178326 PLN02725, PLN02725,
GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase.
Length = 306
Score = 44.7 bits (106), Expect = 3e-05
Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 24/166 (14%)
Query: 171 WGHTYGIPVLLSNCSNNYGPYH-F-PEK--LIPLAITRMIEG-----SHVFLYGDGQNVR 221
W G+P +N YGP+ F PE +IP I R E V ++G G +R
Sbjct: 150 WDAISGMP------TNLYGPHDNFHPENSHVIPALIRRFHEAKANGAPEVVVWGSGSPLR 203
Query: 222 DWLYVEDHVRALYLVLKKGRIGERYNIGGNNERKNIDIVFEIGFLLDALIPKSYSHTELI 281
++L+V+D A+ ++++ E N+G +E + L L+ + +
Sbjct: 204 EFLHVDDLADAVVFLMRRYSGAEHVNVGSGDEVTIKE--------LAELVKEVVGFEGEL 255
Query: 282 RFIEDRPGHDRRYAIDSSKIKSEIGWFPQENMESGLNKTVCWYLDN 327
+ +P R +DSSK++S +GW P+ +++ GL +T WYL+N
Sbjct: 256 VWDTSKPDGTPRKLMDSSKLRS-LGWDPKFSLKDGLQETYKWYLEN 300
>gnl|CDD|169699 PRK09186, PRK09186, flagellin modification protein A;
Provisional.
Length = 256
Score = 44.6 bits (106), Expect = 4e-05
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 4 IVTGGAGFIGSALCRYLV-NDLKIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVDICDR 62
++TG G IGSAL + ++ + IDK L SL + +S S +++DI D+
Sbjct: 8 LITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQ 67
Query: 63 ECIRSALKEFQP-----DAIVNFA 81
E + L + D VN A
Sbjct: 68 ESLEEFLSKSAEKYGKIDGAVNCA 91
>gnl|CDD|178047 PLN02427, PLN02427, UDP-apiose/xylose synthase.
Length = 386
Score = 42.2 bits (99), Expect = 2e-04
Identities = 69/293 (23%), Positives = 117/293 (39%), Gaps = 55/293 (18%)
Query: 1 MRLIVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQ---SNLFSFLQV 57
+ + + G GFIGS LC L+ + +VL +D Y + L E S F ++
Sbjct: 15 LTICMIGAGGFIGSHLCEKLMTETPHKVLALD--VYNDKIKHLLEPDTVPWSGRIQFHRI 72
Query: 58 DICDRECIRSALKEFQPDAIVNFAAE-SHVDRSILGADEFITTNIIGTFILLEETRLWWS 116
+I + +K D +N AA + D + D I +N I +++
Sbjct: 73 NIKHDSRLEGLIK--MADLTINLAAICTPADYNTRPLDT-IYSNFIDALPVVKY------ 123
Query: 117 CLSQDKKDQFRFLQISTDEVYGSLDKGLFSEDMPY--NPS--------SP---------- 156
C +K R + ST EVYG +D P +P+ SP
Sbjct: 124 CSENNK----RLIHFSTCEVYGKTIGSFLPKDHPLRQDPAFYVLKEDESPCIFGSIEKQR 179
Query: 157 --YSATKASSDYLVLAWGHTYGIPVLLSNCSNNYGP-YHF------PEKLIPLAI----T 203
Y+ K + L+ A G G+ + N GP F P + +P +
Sbjct: 180 WSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSN 239
Query: 204 RMIEGSHVFLYGDGQNVRDWLYVEDHVRALYLVLKK-GRI-GERYNIGG-NNE 253
++ + L GQ+ R ++Y++D + A+ L+++ R G +N+G NNE
Sbjct: 240 NLLRREPLKLVDGGQSQRTFVYIKDAIEAVLLMIENPARANGHIFNVGNPNNE 292
>gnl|CDD|183375 PRK11908, PRK11908, NAD-dependent epimerase/dehydratase family
protein; Provisional.
Length = 347
Score = 41.2 bits (97), Expect = 4e-04
Identities = 51/225 (22%), Positives = 92/225 (40%), Gaps = 34/225 (15%)
Query: 132 STDEVYGSLDKGLFSED---MPYNP-SSP---YSATKASSDYLVLAWGHTYGIPVLLSNC 184
ST EVYG F + + Y P + P Y+ +K D ++ A+G G+ L
Sbjct: 117 STSEVYGMCPDEEFDPEASPLVYGPINKPRWIYACSKQLMDRVIWAYGMEEGLNFTLFRP 176
Query: 185 SNNYGP----YHFPE----KLIPLAITRMIEGSHVFLYGDGQNVRDWLYVEDHVRALYLV 236
N GP + P+ +++ + ++ G + L G R + ++D + AL +
Sbjct: 177 FNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGEPISLVDGGSQKRAFTDIDDGIDALMKI 236
Query: 237 L--KKG-RIGERYNIGGNNERKNIDIVFEIGFLLDAL--IPKSYSHTELIRFIEDRPG-- 289
+ K G G+ YNIG N + N + +L+ P+ + ++ +E G
Sbjct: 237 IENKDGVASGKIYNIG--NPKNNHSVRELANKMLELAAEYPEYAESAKKVKLVETTSGAY 294
Query: 290 --------HDRRYAIDSSKIKSEIGWFPQENMESGLNKTVCWYLD 326
+R ID++ E+GW P+ M+ L + Y
Sbjct: 295 YGKGYQDVQNRVPKIDNTM--QELGWAPKTTMDDALRRIFEAYRG 337
>gnl|CDD|180823 PRK07074, PRK07074, short chain dehydrogenase; Provisional.
Length = 257
Score = 39.8 bits (93), Expect = 0.001
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 4 IVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVDICDRE 63
+VTG AG IG AL R + VL +D A + + F + D+ D
Sbjct: 6 LVTGAAGGIGQALARRFLAAGDR-VLALDIDAAALA-AFADALGDAR-FVPVACDLTDAA 62
Query: 64 CIRSAL----KEFQP-DAIVNFA 81
+ +AL E P D +V A
Sbjct: 63 SLAAALANAAAERGPVDVLVANA 85
>gnl|CDD|183776 PRK12827, PRK12827, short chain dehydrogenase; Provisional.
Length = 249
Score = 39.7 bits (93), Expect = 0.001
Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 16/119 (13%)
Query: 1 MRLIVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGN-----LNSLKEISQSNLFSFL 55
R+++TGG+G +G A+ L D V+V+D G + + E + L
Sbjct: 7 RRVLITGGSGGLGRAIAVRLAAD-GADVIVLDIHPMRGRAEADAVAAGIE-AAGGKALGL 64
Query: 56 QVDICDRECIRSALK----EFQP-DAIVNFAA----ESHVDRSILGADEFITTNIIGTF 105
D+ D R+AL EF D +VN A + + SI D+ I N+ G F
Sbjct: 65 AFDVRDFAATRAALDAGVEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFF 123
>gnl|CDD|131468 TIGR02415, 23BDH, acetoin reductases. One member of this family,
as characterized in Klebsiella terrigena, is described
as able to interconvert acetoin + NADH with
meso-2,3-butanediol + NAD(+). It is also called capable
of irreversible reduction of diacetyl with NADH to
acetoin. Blomqvist, et al. decline to specify either EC
1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC
1.1.1.5, which is acetoin dehydrogenase without a
specified stereochemistry, for this enzyme. This enzyme
is a homotetramer in the family of short chain
dehydrogenases (pfam00106). Another member of this
family, from Corynebacterium glutamicum, is called
L-2,3-butanediol dehydrogenase (PubMed:11577733).
Length = 254
Score = 38.2 bits (89), Expect = 0.004
Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 14/113 (12%)
Query: 4 IVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFS-FLQVDICDR 62
+VTGGA IG + L D V V D L + KEI+Q+ + ++D+ D+
Sbjct: 4 LVTGGAQGIGKGIAERLAKD-GFAVAVAD-LNEETAKETAKEINQAGGKAVAYKLDVSDK 61
Query: 63 ----ECIRSALKEF-QPDAIVNFAAESHVDRSILGADEFI-----TTNIIGTF 105
I A ++F D +VN A + + IL E N+ G
Sbjct: 62 DQVFSAIDQAAEKFGGFDVMVNNAGVAPIT-PILEITEEELKKVYNVNVKGVL 113
>gnl|CDD|131680 TIGR02632, RhaD_aldol-ADH, rhamnulose-1-phosphate aldolase/alcohol
dehydrogenase.
Length = 676
Score = 37.5 bits (87), Expect = 0.005
Identities = 45/192 (23%), Positives = 79/192 (41%), Gaps = 36/192 (18%)
Query: 5 VTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFSF-------LQV 57
VTGGAG IG R L + V++ D NL + + ++ F L++
Sbjct: 419 VTGGAGGIGRETARRLAAE-GAHVVLADL-----NLEAAEAVAAEINGQFGAGRAVALKM 472
Query: 58 DICDRECIRSALKEFQPDAIVNFAAESHVDRSILGADEFITTNIIGTFILLEETRLWWSC 117
D+ D + +++A D + + VD + A ++ T L+E +L
Sbjct: 473 DVTDEQAVKAAFA----DVALAYGG---VDIVVNNAGIATSSPFEET--TLQEWQLNLDI 523
Query: 118 L-------SQDKKDQFRFLQISTDEVYGSLDKGLFSEDMPYNPSSPYSATKASSDYLV-- 168
L +++ Q R + + V+ + +++ +S YSA KA+ +L
Sbjct: 524 LATGYFLVAREAFRQMREQGLGGNIVFIASKNAVYAG----KNASAYSAAKAAEAHLARC 579
Query: 169 -LAWGHTYGIPV 179
A G TYGI V
Sbjct: 580 LAAEGGTYGIRV 591
>gnl|CDD|183773 PRK12824, PRK12824, acetoacetyl-CoA reductase; Provisional.
Length = 245
Score = 36.7 bits (85), Expect = 0.008
Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 15/88 (17%)
Query: 4 IVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQV-----D 58
+VTG IGSA+ R L+ND VI TY + K+ + F+ QV D
Sbjct: 6 LVTGAKRGIGSAIARELLND---GYRVI--ATYFSGNDCAKDWFEEYGFTEDQVRLKELD 60
Query: 59 ICDRECIRSALKEFQP-----DAIVNFA 81
+ D E AL E + D +VN A
Sbjct: 61 VTDTEECAEALAEIEEEEGPVDILVNNA 88
>gnl|CDD|171821 PRK12937, PRK12937, short chain dehydrogenase; Provisional.
Length = 245
Score = 36.3 bits (84), Expect = 0.012
Identities = 43/180 (23%), Positives = 69/180 (38%), Gaps = 39/180 (21%)
Query: 4 IVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQS------NLFSFLQV 57
IVTG + IG+A+ R L D V V YAG+ + E+ + Q
Sbjct: 9 IVTGASRGIGAAIARRLAAD-GFAVAV----NYAGSAAAADELVAEIEAAGGRAIAV-QA 62
Query: 58 DICDRECIRSALKEFQP-----DAIVNFAA----ESHVDRSILGADEFITTNIIGTFILL 108
D+ D + + D +VN A + D + D I TN+ G F++L
Sbjct: 63 DVADAAAVTRLFDAAETAFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVL 122
Query: 109 EETRLWWSCLSQDKKDQFRFLQISTDEVYGSLDKGLFSEDMPYNPSSPYSATKASSDYLV 168
E ++ R + +ST + +P PY+A+KA+ + LV
Sbjct: 123 REA-------ARHLGQGGRIINLSTSVI-----------ALPLPGYGPYAASKAAVEGLV 164
>gnl|CDD|180133 PRK05565, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase;
Provisional.
Length = 247
Score = 36.0 bits (84), Expect = 0.014
Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 16/122 (13%)
Query: 1 MRL-----IVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFS-F 54
M+L IVTG +G IG A+ L + +V++ + L+EI + +
Sbjct: 1 MKLMGKVAIVTGASGGIGRAIAELLAKE-GAKVVIAYDINEEAAQELLEEIKEEGGDAIA 59
Query: 55 LQVDICDRE----CIRSALKEFQP-DAIVNFAAESHV----DRSILGADEFITTNIIGTF 105
++ D+ E + +++F D +VN A S+ D + D I N+ G
Sbjct: 60 VKADVSSEEDVENLVEQIVEKFGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVM 119
Query: 106 IL 107
+L
Sbjct: 120 LL 121
>gnl|CDD|182998 PRK11150, rfaD, ADP-L-glycero-D-mannoheptose-6-epimerase;
Provisional.
Length = 308
Score = 35.8 bits (83), Expect = 0.016
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 10/62 (16%)
Query: 3 LIVTGGAGFIGSALCRYLVNDLKIQ-VLVIDKLTYAGNLNSLKEISQSNLFSFLQVDICD 61
+IVTGGAGFIGS + + L ND I +LV+D L + K + NL D D
Sbjct: 2 IIVTGGAGFIGSNIVKAL-NDKGITDILVVDNLK-----DGTKFV---NLVDLDIADYMD 52
Query: 62 RE 63
+E
Sbjct: 53 KE 54
>gnl|CDD|181508 PRK08628, PRK08628, short chain dehydrogenase; Provisional.
Length = 258
Score = 35.7 bits (83), Expect = 0.020
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 4 IVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVDICDRE 63
IVTGGA IG+A+ L + I V+ L+ + F+QVD+ D
Sbjct: 11 IVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRALQPR--AEFVQVDLTDDA 68
Query: 64 CIRSALKEFQP-----DAIVNFA 81
R A+++ D +VN A
Sbjct: 69 QCRDAVEQTVAKFGRIDGLVNNA 91
>gnl|CDD|168574 PRK06484, PRK06484, short chain dehydrogenase; Validated.
Length = 520
Score = 35.2 bits (81), Expect = 0.026
Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 21/125 (16%)
Query: 4 IVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFS---FLQVDIC 60
+VTG AG IG A C+ QV+V D+ N+ +E + +L L +D+
Sbjct: 9 LVTGAAGGIGRAACQRFARA-GDQVVVADR-----NVERARERAD-SLGPDHHALAMDVS 61
Query: 61 DRECIRSALKEFQP-----DAIVNFAA------ESHVDRSILGADEFITTNIIGTFILLE 109
D IR ++ D +VN A + +D ++ N+ G +++
Sbjct: 62 DEAQIREGFEQLHREFGRIDVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAR 121
Query: 110 ETRLW 114
E
Sbjct: 122 EALRL 126
Score = 29.8 bits (67), Expect = 1.0
Identities = 30/112 (26%), Positives = 43/112 (38%), Gaps = 14/112 (12%)
Query: 4 IVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVDICDRE 63
+TGGA IG A+ ++L+ID+ A L E S Q DI D
Sbjct: 273 AITGGARGIGRAVAD-RFAAAGDRLLIIDR--DAEGAKKLAEALGDEHLSV-QADITDEA 328
Query: 64 CIRSALKEFQP-----DAIVNFAAESHV-----DRSILGADEFITTNIIGTF 105
+ SA + Q D +VN A + V ++S N+ G F
Sbjct: 329 AVESAFAQIQARWGRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAF 380
>gnl|CDD|180897 PRK07231, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase;
Provisional.
Length = 251
Score = 34.4 bits (80), Expect = 0.041
Identities = 27/115 (23%), Positives = 41/115 (35%), Gaps = 32/115 (27%)
Query: 1 MRL-----IVTGGAGFIGSALCRYL--------VNDLKIQVL--VIDKLTYAGNLNSLKE 45
MRL IVTG + IG + R V D + V ++ G
Sbjct: 1 MRLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAGGRA----- 55
Query: 46 ISQSNLFSFLQVDICD----RECIRSALKEF-QPDAIVNFAAESHVDRSILGADE 95
+ D+ D + +AL+ F D +VN A +H + +L DE
Sbjct: 56 -------IAVAADVSDEADVEAAVAAALERFGSVDILVNNAGTTHRNGPLLDVDE 103
>gnl|CDD|180126 PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase;
Validated.
Length = 248
Score = 34.4 bits (80), Expect = 0.044
Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 21/119 (17%)
Query: 4 IVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNL-----FSFLQVD 58
+VTG + IG A+ L V++ YA + + + +Q D
Sbjct: 9 LVTGASRGIGRAIAERLAAQ-GANVVI----NYASSEAGAEALVAEIGALGGKALAVQGD 63
Query: 59 ICDRECIRSALK----EFQP-DAIVNFAAESHVDRSIL--GADEF---ITTNIIGTFIL 107
+ D E + A+ EF D +VN A + D ++ +++ I TN+ G F L
Sbjct: 64 VSDAESVERAVDEAKAEFGGVDILVNNAGIT-RDNLLMRMKEEDWDRVIDTNLTGVFNL 121
>gnl|CDD|162529 TIGR01777, yfcH, conserved hypothetical protein TIGR01777. This
model represents a clade of proteins of unknown
function including the E. coli yfcH protein.
Length = 292
Score = 33.8 bits (78), Expect = 0.078
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 14/84 (16%)
Query: 5 VTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVDICDREC 64
+TGG GFIG AL + L D +V ++ + + +N
Sbjct: 3 ITGGTGFIGRALTQRLTKDGH-EVTIL----------TRSPPAGANTKWEGYKPW-APLA 50
Query: 65 IRSALKEFQPDAIVNFAAESHVDR 88
AL+ DA++N A E D+
Sbjct: 51 ESEALEGA--DAVINLAGEPIADK 72
>gnl|CDD|180817 PRK07060, PRK07060, short chain dehydrogenase; Provisional.
Length = 245
Score = 33.5 bits (77), Expect = 0.081
Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 11/110 (10%)
Query: 2 RLIVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVDICD 61
++VTG + IG A L +V+ + N +L ++ L++D+ D
Sbjct: 11 SVLVTGASSGIGRACAVALAQR-GARVVAAAR-----NAAALDRLAGETGCEPLRLDVGD 64
Query: 62 RECIRSALKEFQP-DAIVNFAA----ESHVDRSILGADEFITTNIIGTFI 106
IR+AL D +VN A ES +D + G D + N G +
Sbjct: 65 DAAIRAALAAAGAFDGLVNCAGIASLESALDMTAEGFDRVMAVNARGAAL 114
>gnl|CDD|181518 PRK08643, PRK08643, acetoin reductase; Validated.
Length = 256
Score = 33.5 bits (77), Expect = 0.083
Identities = 19/84 (22%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 4 IVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFSF-LQVDICDR 62
+VTG IG A+ + LV D +V ++D + ++S+ + ++ D+ DR
Sbjct: 6 LVTGAGQGIGFAIAKRLVED-GFKVAIVD-YNEETAQAAADKLSKDGGKAIAVKADVSDR 63
Query: 63 ECIRSALKEFQP-----DAIVNFA 81
+ + +A+++ + +VN A
Sbjct: 64 DQVFAAVRQVVDTFGDLNVVVNNA 87
>gnl|CDD|181336 PRK08265, PRK08265, short chain dehydrogenase; Provisional.
Length = 261
Score = 33.4 bits (77), Expect = 0.099
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 14/92 (15%)
Query: 4 IVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGN--LNSLKEISQSNLFSFLQVDICD 61
IVTGGA IG+A+ R LV +V ++D G SL E ++ F+ DI D
Sbjct: 10 IVTGGATLIGAAVARALVAA-GARVAIVDIDADNGAAVAASLGERAR-----FIATDITD 63
Query: 62 ----RECIRSALKEF-QPDAIVNFAAESHVDR 88
+ + + F + D +VN A +++D
Sbjct: 64 DAAIERAVATVVARFGRVDILVNLAC-TYLDD 94
>gnl|CDD|181957 PRK09563, rbgA, GTPase YlqF; Reviewed.
Length = 287
Score = 32.5 bits (75), Expect = 0.17
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 255 KNIDIVFEIGFLLDALIPKSYSHTELIRFIEDRPGH----DRRYAIDSSKIKSEIGWFPQ 310
K +D+V E+ LDA IP S + + + I ++P ++ D K I +F +
Sbjct: 23 KLVDVVIEV---LDARIPLSSENPMIDKIIGNKP-RLLILNKSDLADPEVTKKWIEYFEE 78
Query: 311 EN 312
+
Sbjct: 79 QG 80
>gnl|CDD|183774 PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase;
Provisional.
Length = 249
Score = 32.1 bits (74), Expect = 0.21
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 21/120 (17%)
Query: 4 IVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFS-----FLQVD 58
+VTG A +G A+ L V+ + Y + + +E+ ++ +Q D
Sbjct: 10 LVTGAARGLGRAIALRLARA---GADVV--VHYRSDEEAAEELVEAVEALGRRAQAVQAD 64
Query: 59 ICDRECIRSALKE----F-QPDAIVNFAAESHVDRSI--LGADEF---ITTNIIGTFILL 108
+ D+ + +A+ F + D +VN A D+ + + DE+ I N+ G F LL
Sbjct: 65 VTDKAALEAAVAAAVERFGRIDILVNNAG-IFEDKPLADMSDDEWDEVIDVNLSGVFHLL 123
>gnl|CDD|181638 PRK09072, PRK09072, short chain dehydrogenase; Provisional.
Length = 263
Score = 32.2 bits (74), Expect = 0.21
Identities = 24/126 (19%), Positives = 42/126 (33%), Gaps = 34/126 (26%)
Query: 2 RLIVTGGAGFIGSALCRYLV-----------NDLKIQVLVIDKLTYAGNLNSLKEISQSN 50
R+++TG +G IG AL L N K++ L +L Y G
Sbjct: 7 RVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEAL-AARLPYPGRHRW-------- 57
Query: 51 LFSFLQVDICDRECIRSALKEF-----QPDAIVNFAAESHV----DRSILGADEFITTNI 101
+ D+ R A+ + ++N A +H D+ + + N+
Sbjct: 58 ----VVADLTSEAG-REAVLARAREMGGINVLINNAGVNHFALLEDQDPEAIERLLALNL 112
Query: 102 IGTFIL 107
L
Sbjct: 113 TAPMQL 118
>gnl|CDD|129055 smart00822, PKS_KR, This enzymatic domain is part of bacterial
polyketide synthases and catalyses the first step in
the reductive modification of the beta-carbonyl centres
in the growing polyketide chain. It uses NADPH to
reduce the keto group to a hydroxy group.
Length = 180
Score = 32.0 bits (74), Expect = 0.24
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 4 IVTGGAGFIGSALCRYLV 21
++TGG G +G L R+L
Sbjct: 4 LITGGLGGLGLELARWLA 21
>gnl|CDD|180439 PRK06171, PRK06171, sorbitol-6-phosphate 2-dehydrogenase;
Provisional.
Length = 266
Score = 31.9 bits (73), Expect = 0.27
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 15/86 (17%)
Query: 2 RLIVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVDICD 61
+IVTGG+ IG A+ + L+ V+ D + N F+ D+
Sbjct: 11 IIIVTGGSSGIGLAIVKELLA-NGANVVNADI--------HGGDGQHENYQ-FVPTDVSS 60
Query: 62 RE----CIRSALKEF-QPDAIVNFAA 82
E + +++F + D +VN A
Sbjct: 61 AEEVNHTVAEIIEKFGRIDGLVNNAG 86
>gnl|CDD|180879 PRK07201, PRK07201, short chain dehydrogenase; Provisional.
Length = 657
Score = 31.8 bits (73), Expect = 0.27
Identities = 48/190 (25%), Positives = 70/190 (36%), Gaps = 50/190 (26%)
Query: 1 MRLIVTGGAGFIGSALC-RYLVNDLKIQVLVIDKLTYAGNLNSLKE-------------I 46
MR VTGG GFIG L R L + V V+ + L +L +
Sbjct: 1 MRYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSLSRLEALAAYWGADRVVPLVGDL 60
Query: 47 SQSNLFSFLQVDICDRECIRSALKEFQPDAIVNFAAESHVDRSI--LGADE--FITTNII 102
++ L + D + D +V+ AA I L ADE N+
Sbjct: 61 TEPG----LGLSEADIAELGDI------DHVVHLAA-------IYDLTADEEAQRAANVD 103
Query: 103 GTFILLE-ETRLWWSCLSQDKKDQFRFLQISTDEVYGSLDKGLFSEDM---PYNPSSPYS 158
GT ++E RL + F +S+ V G +G+F ED +PY
Sbjct: 104 GTRNVVELAERLQAAT----------FHHVSSIAVAG-DYEGVFREDDFDEGQGLPTPYH 152
Query: 159 ATKASSDYLV 168
TK ++ LV
Sbjct: 153 RTKFEAEKLV 162
>gnl|CDD|181389 PRK08324, PRK08324, short chain dehydrogenase; Validated.
Length = 681
Score = 31.7 bits (73), Expect = 0.29
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 4 IVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVDICDRE 63
+VTG AG IG A + L V++ D L + E+ + + D+ D
Sbjct: 426 LVTGAAGGIGKATAKRLA-AEGACVVLAD-LDEEAAEAAAAELGGPDRALGVACDVTDEA 483
Query: 64 CIRSALKE 71
+++A +E
Sbjct: 484 AVQAAFEE 491
>gnl|CDD|163345 TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-binding protein
YlqF. Members of this protein family are GTP-binding
proteins involved in ribosome biogenesis, including the
essential YlqF protein of Bacillus subtilis, which is an
essential protein. They are related to Era, EngA, and
other GTPases of ribosome biogenesis, but are circularly
permuted. This family is not universal, and is not
present in Escherichia coli, and so is not as well
studied as some other GTPases. This model is built for
bacterial members.
Length = 276
Score = 31.7 bits (73), Expect = 0.29
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 255 KNIDIVFEIGFLLDALIPKSYSHTELIRFIEDRP 288
K +D+V E+ LDA IP S + + ++P
Sbjct: 20 KLVDVVIEV---LDARIPLSSRNPMIDEIRGNKP 50
>gnl|CDD|132250 TIGR03206, benzo_BadH, 2-hydroxycyclohexanecarboxyl-CoA
dehydrogenase. Members of this protein family are the
enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase.
The enzymatic properties were confirmed experimentally
in Rhodopseudomonas palustris; the enzyme is
homotetrameric, and not sensitive to oxygen. This
enzyme is part of proposed pathway for degradation of
benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from
the analogous in Thauera aromatica. It also may occur
in degradation of the non-aromatic compound
cyclohexane-1-carboxylate.
Length = 250
Score = 31.4 bits (71), Expect = 0.36
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 4 IVTGGAGFIGSALCRYLVND-LKIQVLVIDK---LTYAGNLNSLKEISQSNLFSFLQVDI 59
IVTGG G IG A CR + K+ V +++ A ++ + +Q+ DI
Sbjct: 7 IVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQA-----FACDI 61
Query: 60 CDRECIRSAL 69
DR+ + +A+
Sbjct: 62 TDRDSVDTAV 71
>gnl|CDD|183833 PRK12939, PRK12939, short chain dehydrogenase; Provisional.
Length = 250
Score = 31.5 bits (72), Expect = 0.38
Identities = 26/119 (21%), Positives = 42/119 (35%), Gaps = 12/119 (10%)
Query: 2 RLIVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNL-FSFLQVDIC 60
R +VTG A +G+A L V D L + + + D+
Sbjct: 9 RALVTGAARGLGAAFAEALAEA-GATVAFNDGLAAEAR-ELAAALEAAGGRAHAIAADLA 66
Query: 61 D----RECIRSALKEF-QPDAIVNFAA----ESHVDRSILGADEFITTNIIGTFILLEE 110
D + +A D +VN A +S + I D + N+ GTF++L
Sbjct: 67 DPASVQRFFDAAAAALGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRA 125
>gnl|CDD|180183 PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase;
Validated.
Length = 246
Score = 31.3 bits (72), Expect = 0.44
Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 12/88 (13%)
Query: 2 RLIVTGGAGFIGSALCRYLVND-LKIQVLVIDKLTYAGNLNSLKEISQSNLFS--FLQVD 58
+VTG + IG A+ L D K+ + + +L ++ L D
Sbjct: 7 TALVTGASRGIGRAIALRLAADGAKVVIYDSN----EEAAEALAAELRAAGGEARVLVFD 62
Query: 59 ICDRECIRSALKEF-----QPDAIVNFA 81
+ D +R+ ++ D +VN A
Sbjct: 63 VSDEAAVRALIEAAVEAFGALDILVNNA 90
>gnl|CDD|162550 TIGR01829, AcAcCoA_reduct, acetoacetyl-CoA reductase.
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH.
Members of this family may act in the biosynthesis of
poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and
related poly-beta-hydroxyalkanoates. Note that the
member of this family from Azospirillum brasilense,
designated NodG, appears to lack acetoacetyl-CoA
reductase activity and to act instead in the production
of nodulation factor. This family is downgraded to
subfamily for this NodG. Other proteins designated
NodG, as from Rhizobium, belong to related but distinct
protein families.
Length = 242
Score = 30.9 bits (70), Expect = 0.53
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 4 IVTGGAGFIGSALCRYLVND 23
+VTGG G IG+A+C+ L D
Sbjct: 4 LVTGGMGGIGTAICQRLAKD 23
>gnl|CDD|181239 PRK08125, PRK08125, bifunctional UDP-glucuronic acid
decarboxylase/UDP-4-amino-4-deoxy-L-arabinose
formyltransferase; Validated.
Length = 660
Score = 30.7 bits (70), Expect = 0.63
Identities = 45/146 (30%), Positives = 63/146 (43%), Gaps = 29/146 (19%)
Query: 132 STDEVYGSLDKGLFSEDM------PYN-PSSPYSATKASSDYLVLAWGHTYGIPVLLSNC 184
ST EVYG F ED P N YS +K D ++ A+G G+ L
Sbjct: 431 STSEVYGMCTDKYFDEDTSNLIVGPINKQRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRP 490
Query: 185 SNNYGPYHFPEKLIPL---------AITRMI----EGSHVFLYGDGQNVRDWLYVEDHVR 231
N GP +L L AIT++I EGS + L G+ R + + D +
Sbjct: 491 FNWMGP-----RLDNLNAARIGSSRAITQLILNLVEGSPIKLVDGGKQKRCFTDIRDGIE 545
Query: 232 ALYLVL--KKGRI-GERYNIGG-NNE 253
AL+ ++ K R G+ NIG +NE
Sbjct: 546 ALFRIIENKDNRCDGQIINIGNPDNE 571
>gnl|CDD|181112 PRK07774, PRK07774, short chain dehydrogenase; Provisional.
Length = 250
Score = 30.5 bits (69), Expect = 0.68
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 4 IVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFS-FLQVDICDR 62
IVTG AG IG A L + V+V D + G K+I + +QVD+ D
Sbjct: 10 IVTGAAGGIGQAYAEALARE-GASVVVAD-INAEGAERVAKQIVADGGTAIAVQVDVSDP 67
Query: 63 ECIRS----ALKEFQP-DAIVNFAA 82
+ ++ + F D +VN AA
Sbjct: 68 DSAKAMADATVSAFGGIDYLVNNAA 92
>gnl|CDD|183714 PRK12742, PRK12742, oxidoreductase; Provisional.
Length = 237
Score = 30.5 bits (69), Expect = 0.74
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 2 RLIVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVDICD 61
+++V GG+ IG+A+ R V D TYAG+ ++ + ++Q + +Q D D
Sbjct: 8 KVLVLGGSRGIGAAIVRRFVTDGANVRF-----TYAGSKDAAERLAQETGATAVQTDSAD 62
Query: 62 RECIRSALKEFQP-DAIV 78
R+ + +++ D +V
Sbjct: 63 RDAVIDVVRKSGALDILV 80
>gnl|CDD|115573 pfam06925, MGDG_synth, Monogalactosyldiacylglycerol (MGDG)
synthase. This family represents a conserved region of
approximately 180 residues within plant and bacterial
monogalactosyldiacylglycerol (MGDG) synthase
(EC:2.4.1.46). In Arabidopsis, there are two types of
MGDG synthase which differ in their N-terminal portion:
type A and type B.
Length = 169
Score = 30.0 bits (68), Expect = 0.96
Identities = 25/149 (16%), Positives = 46/149 (30%), Gaps = 40/149 (26%)
Query: 25 KIQVLVIDKLTYAGN----------LNSLK--------------EISQSNLFSFLQVDIC 60
+ QV+V D L L +K +I ++ + L
Sbjct: 19 EYQVVVHDSLKELNPFLLKFVLRSYLFLVKHSRLYRLLYYGTEPKIPHKSILAKLATFFA 78
Query: 61 DRECIRSALKEFQPDAIVN-FAAESHVDRSILGADE----FITTNIIGTFILLEETRLWW 115
+ + LKEFQPD I++ + V S+L + + ++ F W
Sbjct: 79 RE--LAALLKEFQPDIIISTHPLPAAVPLSVLKSKGLLKRVLVVTVVTDFRTCH--PFWL 134
Query: 116 S-------CLSQDKKDQFRFLQISTDEVY 137
S++ K + I +
Sbjct: 135 HPEIDRYYVPSKEVKKEALEKGIDPSNIK 163
>gnl|CDD|181909 PRK09496, trkA, potassium transporter peripheral membrane
component; Reviewed.
Length = 453
Score = 30.1 bits (69), Expect = 1.0
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 1 MRLIVTGGAGFIGSALCRYLVNDLKIQVLVIDK 33
M++I+ G AG +G L L + V VID
Sbjct: 1 MKIIIVG-AGQVGYTLAENLSGE-NNDVTVIDT 31
>gnl|CDD|184944 PRK14982, PRK14982, acyl-ACP reductase; Provisional.
Length = 340
Score = 29.6 bits (67), Expect = 1.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 5 VTGGAGFIGSALCRYLVNDLKIQVLVI 31
V G G IGSA+CR+L + L++
Sbjct: 160 VVGATGDIGSAVCRWLDAKTGVAELLL 186
>gnl|CDD|178263 PLN02657, PLN02657, 3,8-divinyl protochlorophyllide a 8-vinyl
reductase.
Length = 390
Score = 29.3 bits (66), Expect = 1.4
Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 3/80 (3%)
Query: 2 RLIVTGGAGFIGSALCRYLVN-DLKIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVDIC 60
++V G G+IG + R LV + + +K G + + D+
Sbjct: 62 TVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVT 121
Query: 61 DRECIRSALKEFQP--DAIV 78
D + +R L D +V
Sbjct: 122 DADSLRKVLFSEGDPVDVVV 141
>gnl|CDD|182184 PRK09987, PRK09987, dTDP-4-dehydrorhamnose reductase;
Provisional.
Length = 299
Score = 29.5 bits (66), Expect = 1.5
Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 19/89 (21%)
Query: 1 MRLIVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVDIC 60
M +++ G G +G L R L + L + Y G D
Sbjct: 1 MNILLFGKTGQVGWELQRALAPLGNLIALDVHSTDYCG-------------------DFS 41
Query: 61 DRECIRSALKEFQPDAIVNFAAESHVDRS 89
+ E + +++ +PD IVN AA + VD++
Sbjct: 42 NPEGVAETVRKIRPDVIVNAAAHTAVDKA 70
>gnl|CDD|181348 PRK08277, PRK08277, D-mannonate oxidoreductase; Provisional.
Length = 278
Score = 29.1 bits (66), Expect = 1.8
Identities = 28/128 (21%), Positives = 52/128 (40%), Gaps = 27/128 (21%)
Query: 4 IVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEI-SQSNLFSFLQVDICDR 62
++TGG G +G A+ + L +V ++D+ + EI + ++ D+ D+
Sbjct: 14 VITGGGGVLGGAMAKELARA-GAKVAILDRNQEKAE-AVVAEIKAAGGEALAVKADVLDK 71
Query: 63 ECIRSA----LKEFQP-DAIVNFAAESH----VDRSILGADEFITT-------------- 99
E + A L++F P D ++N A +H D E T
Sbjct: 72 ESLEQARQQILEDFGPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFD 131
Query: 100 -NIIGTFI 106
N++GT +
Sbjct: 132 LNLLGTLL 139
>gnl|CDD|180821 PRK07067, PRK07067, sorbitol dehydrogenase; Provisional.
Length = 257
Score = 28.8 bits (65), Expect = 2.0
Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 20/124 (16%)
Query: 1 MRL-----IVTGGAGFIGSALC-RYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFSF 54
MRL ++TG A IG A+ RYL + V++ D + A + EI + +
Sbjct: 2 MRLQGKVALLTGAASGIGEAVAERYLAEGAR--VVIAD-IKPARARLAALEIGPAAI--A 56
Query: 55 LQVDICDRE----CIRSALKEF-QPDAIVNFAA----ESHVDRSILGADEFITTNIIGTF 105
+ +D+ ++ + +A++ F D + N AA +D S D N+ G F
Sbjct: 57 VSLDVTRQDSIDRIVAAAVERFGGIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLF 116
Query: 106 ILLE 109
L++
Sbjct: 117 FLMQ 120
>gnl|CDD|150033 pfam09215, Phage-Gp8, Bacteriophage T4, Gp8. Members of this
family of viral baseplate structural proteins adopt a
structure consisting of a three-layer beta-sandwich with
two finger-like loops containing an alpha-helix at the
opposite sides of the sandwich. The two peripheral,
five-stranded, antiparallel beta-sheets are stacked
against the middle, four-stranded, antiparallel
beta-sheet. Attachment of this family of proteins to the
baseplate during assembly creates a binding site for
subsequent attachment of Gp6.
Length = 324
Score = 28.6 bits (64), Expect = 2.5
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 171 WGHTYGIP--VLLSNCSNNYGPYHFPEKLI 198
W + Y IP V+L+ C+N Y FPE+L
Sbjct: 178 WEYLYTIPPDVVLNFCTNEYIVVPFPEELA 207
>gnl|CDD|180462 PRK06198, PRK06198, short chain dehydrogenase; Provisional.
Length = 260
Score = 28.4 bits (64), Expect = 2.7
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 15/120 (12%)
Query: 4 IVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNL-FSFLQVDICD- 61
+VTGG +G+A+ R +++ + G + E+ F+Q D+ D
Sbjct: 10 LVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQA-AELEALGAKAVFVQADLSDV 68
Query: 62 ---RECIRSALKEF-QPDAIVNFAAESHVDR-SILGA-----DEFITTNIIGTFILLEET 111
R + +A + F + DA+VN A + DR +IL D N+ F L++E
Sbjct: 69 EDCRRVVAAADEAFGRLDALVNAAGLT--DRGTILDTSPELFDRHFAVNVRAPFFLMQEA 126
>gnl|CDD|129899 TIGR00819, ydaH, p-Aminobenzoyl-glutamate transporter family. The
p-Aminobenzoyl-glutamate transporter family includes two
transporters, the AbgT (YdaH) protein of E. coli and
MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic
in wild type cells, but when expressed on a high copy
number plasmid, or when expressed at higher levels due
to mutation, it allows utilization of
p-aminobenzoyl-glutamate as a source of p-aminobenzoate
for p-aminobenzoate auxotrophs. p-Aminobenzoate is a
constituent of and a precursor for the biosynthesis of
folic acid.
Length = 513
Score = 28.0 bits (62), Expect = 4.3
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 17/87 (19%)
Query: 68 ALKEFQPDAIVN------FAAESHVDRSILGADEFITTNIIGTFILLEETRL--WWSCLS 119
A F PD V F A S +I+G FIT II E +L W L+
Sbjct: 194 AAAAFHPDMHVGPEANWFFMAASTFVIAIIGG--FITDKII-------EPQLGPWQGDLN 244
Query: 120 QDKKDQFRFLQISTDEVYGSLDKGLFS 146
QD+KD +I+ E +G + G+
Sbjct: 245 QDEKDIRHLNEITELERFGLIIAGVVF 271
>gnl|CDD|182946 PRK11072, PRK11072, bifunctional glutamine-synthetase
adenylyltransferase/deadenyltransferase; Reviewed.
Length = 943
Score = 27.5 bits (62), Expect = 5.6
Identities = 9/21 (42%), Positives = 10/21 (47%), Gaps = 2/21 (9%)
Query: 166 YLVLAWGHTYGIPVLLSNCSN 186
YLVLA H + P L N
Sbjct: 860 YLVLAHAHEH--PELTRWSDN 878
>gnl|CDD|149646 pfam08659, KR, KR domain. This enzymatic domain is part of
bacterial polyketide synthases and catalyses the first
step in the reductive modification of the beta-carbonyl
centres in the growing polyketide chain. It uses NADPH
to reduce the keto group to a hydroxy group.
Length = 181
Score = 27.5 bits (62), Expect = 6.2
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 4 IVTGGAGFIGSALCRYLVN 22
+VTGG G +G L R+L
Sbjct: 4 LVTGGLGGLGLELARWLAE 22
>gnl|CDD|181864 PRK09448, PRK09448, DNA starvation/stationary phase protection
protein Dps; Provisional.
Length = 162
Score = 27.3 bits (61), Expect = 6.5
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 9/33 (27%)
Query: 226 VEDHVRALYLVLKKGRIGERYNIGGNNERKNID 258
V+DH++AL +RY I N+ RK ID
Sbjct: 108 VQDHLKAL---------ADRYAIVANDVRKAID 131
>gnl|CDD|171822 PRK12938, PRK12938, acetyacetyl-CoA reductase; Provisional.
Length = 246
Score = 26.9 bits (59), Expect = 8.1
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 5 VTGGAGFIGSALCRYLVND 23
VTGG G IG+++C+ L D
Sbjct: 8 VTGGMGGIGTSICQRLHKD 26
>gnl|CDD|177384 PHA02550, 32, single-stranded DNA binding protein; Provisional.
Length = 304
Score = 27.0 bits (60), Expect = 8.5
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 10/51 (19%)
Query: 306 GWFPQENMESGLNKT----VCWYLDNNWWW---RPLYKELKPDNDYSKWKN 349
GW+ EN S VC Y+ NN + + YK K Y W N
Sbjct: 73 GWY-IENCSSTHGDYDSCPVCQYISNNDLYNTGKEEYKLRKRKTSY--WAN 120
>gnl|CDD|162082 TIGR00877, purD, phosphoribosylamine--glycine ligase. This enzyme
appears as a monofunctional protein in prokaryotes but
as part of a larger, multidomain protein in eukaryotes.
Length = 423
Score = 26.9 bits (60), Expect = 8.6
Identities = 7/43 (16%), Positives = 20/43 (46%)
Query: 63 ECIRSALKEFQPDAIVNFAAESHVDRSILGADEFITTNIIGTF 105
+ A+ +A+V FA + +D +++G + + ++
Sbjct: 42 KNKNVAISITDIEALVEFAKKKKIDLAVIGPEAPLVLGLVDAL 84
>gnl|CDD|178387 PLN02790, PLN02790, transketolase.
Length = 654
Score = 26.9 bits (60), Expect = 8.8
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 144 LFSEDMPYNPSSPYSATKASSDYLVLAWGH 173
L+ E M YNP +PY + D VL+ GH
Sbjct: 30 LYDEVMKYNPKNPYWFNR---DRFVLSAGH 56
>gnl|CDD|177800 PLN00214, PLN00214, putative protein; Provisional.
Length = 115
Score = 26.8 bits (59), Expect = 9.0
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Query: 257 IDIVFEIGFLLDA----LIPK-SYSHTELIRFIEDRP---GHDRRY 294
I +VFE G L+D L+ + H LI++I D+P H+ Y
Sbjct: 52 IAVVFENGTLIDPCCNDLVKEGKVCHDTLIKYIADKPMLIAHETEY 97
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.321 0.139 0.435
Gapped
Lambda K H
0.267 0.0731 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,926,331
Number of extensions: 380785
Number of successful extensions: 857
Number of sequences better than 10.0: 1
Number of HSP's gapped: 810
Number of HSP's successfully gapped: 87
Length of query: 358
Length of database: 5,994,473
Length adjustment: 94
Effective length of query: 264
Effective length of database: 3,963,321
Effective search space: 1046316744
Effective search space used: 1046316744
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.1 bits)