BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780920|ref|YP_003065333.1| dTDP-glucose 4,6-dehydratase
[Candidatus Liberibacter asiaticus str. psy62]
(358 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780920|ref|YP_003065333.1| dTDP-glucose 4,6-dehydratase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 358
Score = 740 bits (1911), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/358 (100%), Positives = 358/358 (100%)
Query: 1 MRLIVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVDIC 60
MRLIVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVDIC
Sbjct: 1 MRLIVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVDIC 60
Query: 61 DRECIRSALKEFQPDAIVNFAAESHVDRSILGADEFITTNIIGTFILLEETRLWWSCLSQ 120
DRECIRSALKEFQPDAIVNFAAESHVDRSILGADEFITTNIIGTFILLEETRLWWSCLSQ
Sbjct: 61 DRECIRSALKEFQPDAIVNFAAESHVDRSILGADEFITTNIIGTFILLEETRLWWSCLSQ 120
Query: 121 DKKDQFRFLQISTDEVYGSLDKGLFSEDMPYNPSSPYSATKASSDYLVLAWGHTYGIPVL 180
DKKDQFRFLQISTDEVYGSLDKGLFSEDMPYNPSSPYSATKASSDYLVLAWGHTYGIPVL
Sbjct: 121 DKKDQFRFLQISTDEVYGSLDKGLFSEDMPYNPSSPYSATKASSDYLVLAWGHTYGIPVL 180
Query: 181 LSNCSNNYGPYHFPEKLIPLAITRMIEGSHVFLYGDGQNVRDWLYVEDHVRALYLVLKKG 240
LSNCSNNYGPYHFPEKLIPLAITRMIEGSHVFLYGDGQNVRDWLYVEDHVRALYLVLKKG
Sbjct: 181 LSNCSNNYGPYHFPEKLIPLAITRMIEGSHVFLYGDGQNVRDWLYVEDHVRALYLVLKKG 240
Query: 241 RIGERYNIGGNNERKNIDIVFEIGFLLDALIPKSYSHTELIRFIEDRPGHDRRYAIDSSK 300
RIGERYNIGGNNERKNIDIVFEIGFLLDALIPKSYSHTELIRFIEDRPGHDRRYAIDSSK
Sbjct: 241 RIGERYNIGGNNERKNIDIVFEIGFLLDALIPKSYSHTELIRFIEDRPGHDRRYAIDSSK 300
Query: 301 IKSEIGWFPQENMESGLNKTVCWYLDNNWWWRPLYKELKPDNDYSKWKNLNEMSCNRK 358
IKSEIGWFPQENMESGLNKTVCWYLDNNWWWRPLYKELKPDNDYSKWKNLNEMSCNRK
Sbjct: 301 IKSEIGWFPQENMESGLNKTVCWYLDNNWWWRPLYKELKPDNDYSKWKNLNEMSCNRK 358
>gi|254780328|ref|YP_003064741.1| UDP-glucose 4-epimerase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 333
Score = 84.0 bits (206), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 87/344 (25%), Positives = 155/344 (45%), Gaps = 48/344 (13%)
Query: 3 LIVTGGAGFIGSALCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFSFL-QVDICD 61
++V GGAG+IG+ CR L + +V+D L+ +G+ ++ L+ L QVDICD
Sbjct: 6 VLVVGGAGYIGAHTCRVLY-ERGFLPIVLDNLS-SGH-------AEFVLWGPLEQVDICD 56
Query: 62 RECIRSALKEFQPDAIVNFAAESHVDRSILGADEFITTNIIGTFILLEETRLWWSCLSQD 121
+R+ ++QP ++++FA +++ S+ F NI G+F L+ +
Sbjct: 57 YTNLRAVFAKYQPASVMHFAGLTNISESVKNPSLFYEINIKGSFNLIA---------TAI 107
Query: 122 KKDQFRFLQISTDEVYGSLDKGLFSEDMPYNPSSPYSATKASSDYLVLAWGHTYGIPVLL 181
+ + RF+ ST YG + +E+ P +PY TK + +L G+ ++
Sbjct: 108 ESNVRRFIFSSTCATYGIPHNTIITENDPQESITPYGYTKYVVERELLQHNKVNGLRSVV 167
Query: 182 --------SNCSNNYGPYHFPEK-LIPLAITRMIEGSHVF-LYG------DGQNVRDWLY 225
+ + G +H PE +IPLAI + + F ++G DG +RD+++
Sbjct: 168 LRYFNAAGATLDSIIGEWHNPETHVIPLAIKTAMGYQNSFKVFGQDYATRDGTCLRDYIH 227
Query: 226 VED----HVRALYLVLKKGRIGERYNIGGNNERKNIDIVFEIGFLLDALIPKSYSHTELI 281
V D H+ AL ++ +G N+G +I+ I + + P +Y
Sbjct: 228 VLDLANAHIMALEYLINQGD-SIAINLGTGTGITVKEIISTIQSMYECAFPITYES---- 282
Query: 282 RFIEDRPGHDRRYAIDSSKIKSEIGWFPQENMESGLNKTVCWYL 325
R I D P D+ K K +GW P+ + + W+L
Sbjct: 283 RRIGDPPS----LVADNKKAKKILGWNPKYKLRDIIESAWNWHL 322
>gi|254780921|ref|YP_003065334.1| dTDP-4-dehydrorhamnose reductase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 290
Score = 32.0 bits (71), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 12/122 (9%)
Query: 57 VDICDRECIRSALKEFQPDAIVNFAAESHVDRSILGADEFITTNIIGTFILLEET-RLWW 115
+D+ + S F PD I+N AA + VD++ + + N G + + +
Sbjct: 34 IDLLKPKDFASFFLSFSPDVIINPAAYTAVDKAEDEPEIAFSINAEGAGAIAKAADSIGI 93
Query: 116 SCLSQDKKDQFRFLQISTDEVYGSLDKGLFSEDMPYNPSSPYSATKASSDYLVLAWGHTY 175
C+ ISTD V+ L + E P NP + Y +K + + V ++ + Y
Sbjct: 94 PCI-----------YISTDYVFDGLSRTPIDEFSPTNPLNIYGKSKLAGEEKVASYTNNY 142
Query: 176 GI 177
I
Sbjct: 143 VI 144
>537021.9.peg.410_1
Length = 952
Score = 26.6 bits (57), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 16 LCRYLVNDLKIQVLVIDKLTYAGNLNSLKEISQSNLFSFLQVDICDREC-IRSALKEFQP 74
L R+L ND KI V+ D+ +L ++K++ F Q D C ++S L F
Sbjct: 392 LTRFLKNDYKISVVGNDRFILTDHL-AIKDLMALGRFILSQEDDLSFVCMLKSPLFNFSE 450
Query: 75 DAIVNFAAESHVDRSI 90
D I + H ++
Sbjct: 451 DDIFKICTQRHETETV 466
>gi|254781051|ref|YP_003065464.1| alpha-ketoglutarate decarboxylase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 957
Score = 26.2 bits (56), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 10/43 (23%), Positives = 23/43 (53%)
Query: 191 YHFPEKLIPLAITRMIEGSHVFLYGDGQNVRDWLYVEDHVRAL 233
Y FPE + ++R ++ V+ + QN+ W ++E ++ +
Sbjct: 872 YPFPEDYLIKVLSRFVQAEIVWCQEEPQNMGAWTFIEPYLEKV 914
>gi|254780938|ref|YP_003065351.1| 4'-phosphopantetheinyl transferase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 132
Score = 24.6 bits (52), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 40 LNSLKEISQSNLFSFLQVDICDRECIRSA 68
L S +S FS L+ D+CD C R A
Sbjct: 19 LQSFNRKFESRCFSSLEQDVCDLSCNRVA 47
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.321 0.139 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 243,528
Number of Sequences: 1233
Number of extensions: 10468
Number of successful extensions: 28
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 6
length of query: 358
length of database: 328,796
effective HSP length: 75
effective length of query: 283
effective length of database: 236,321
effective search space: 66878843
effective search space used: 66878843
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 39 (19.6 bits)