HHsearch alignment for GI: 254780921 and conserved domain: COG0458
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism].
Probab=91.17 E-value=0.61 Score=24.50 Aligned_cols=138 Identities=12% Similarity=0.074 Sum_probs=74.3
Q ss_pred CEEEEECCCCHHHHHHHHHHH-CCCEEEEECHHHC------CC--------CCHHHHHHHHHHCCCCEEEECCC-CCCCC
Q ss_conf 949999788978899999996-4985999613670------87--------89999999997559989997863-44543
Q gi|254780921|r 1 MKCLVIGNNGQIAQSLSSMCV-QDVEIIRVGRPDI------DL--------LKPKDFASFFLSFSPDVIINPAA-YTAVD 64 (290)
Q Consensus 1 MkiLVtG~~G~iG~~l~~~l~-~~~~v~~~~r~~~------D~--------~~~~~~~~~l~~~~pd~Vih~Aa-~~~~~ 64 (290)
T Consensus 6 i~Igqa~efdysG~qac~aLkeeg~~vvlvnsnpAti~td~e~AD~~y~eP~~~E~v~~Ii~~E~~Dailp~~ggqt~-- 83 (400)
T COG0458 6 IVIGQAAEFDYSGTQACKALKEEGYGVVLVNSNPATIMTDPELADKVYIEPITKEPVEKIIEKERPDAILPTLGGQTA-- 83 (400)
T ss_pred EEEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCEEECCCCCCCH--
T ss_conf 066764111436789999998669759997288721247800053026624737889999975376626324687413--
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 223322102420122211000112233333344553211135755----4421111222211101245666653101222
Q gi|254780921|r 65 KAEDEPEIAFSINAEGAGAIAKAADSIGIPCIYISTDYVFDGLSR----TPIDEFSPTNPLNIYGKSKLAGEEKVASYTN 140 (290)
Q Consensus 65 ~~e~~~~~~~~~Nv~~~~~l~~~~~~~~~~~I~iSS~~Vy~g~~~----~p~~E~d~~~P~~~Yg~sK~~~E~~v~~~~~ 140 (290)
T Consensus 84 -----------Ln~~~~l~e~g~l~~~gV~vvgs~~eaI~iaeDr~~fke~m~eigi~~P-~~~~~~~~e~~~~~~~ig- 150 (400)
T COG0458 84 -----------LNAALELKEKGVLEKYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVP-SRIAHSVEEADEIADEIG- 150 (400)
T ss_pred -----------HHHHHHHHHHCCHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHCC-
T ss_conf -----------4688998772645644977994587895564209999999998399988-412356777765576369-
Q ss_pred CCCCCCCCCCEEC
Q ss_conf 3223555420003
Q gi|254780921|r 141 NYVILRTAWVYSI 153 (290)
Q Consensus 141 ~~~IlR~~~vyG~ 153 (290)
T Consensus 151 ~PvIVrP~~~lGG 163 (400)
T COG0458 151 YPVIVKPSFGLGG 163 (400)
T ss_pred CCEEEECCCCCCC
T ss_conf 9779806857888