HHsearch alignment for GI: 254780921 and conserved domain: COG0458

>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism].
Probab=91.17  E-value=0.61  Score=24.50  Aligned_cols=138  Identities=12%  Similarity=0.074  Sum_probs=74.3

Q ss_pred             CEEEEECCCCHHHHHHHHHHH-CCCEEEEECHHHC------CC--------CCHHHHHHHHHHCCCCEEEECCC-CCCCC
Q ss_conf             949999788978899999996-4985999613670------87--------89999999997559989997863-44543
Q gi|254780921|r    1 MKCLVIGNNGQIAQSLSSMCV-QDVEIIRVGRPDI------DL--------LKPKDFASFFLSFSPDVIINPAA-YTAVD   64 (290)
Q Consensus         1 MkiLVtG~~G~iG~~l~~~l~-~~~~v~~~~r~~~------D~--------~~~~~~~~~l~~~~pd~Vih~Aa-~~~~~   64 (290)
T Consensus         6 i~Igqa~efdysG~qac~aLkeeg~~vvlvnsnpAti~td~e~AD~~y~eP~~~E~v~~Ii~~E~~Dailp~~ggqt~--   83 (400)
T COG0458           6 IVIGQAAEFDYSGTQACKALKEEGYGVVLVNSNPATIMTDPELADKVYIEPITKEPVEKIIEKERPDAILPTLGGQTA--   83 (400)
T ss_pred             EEEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCEEECCCCCCCH--
T ss_conf             066764111436789999998669759997288721247800053026624737889999975376626324687413--


Q ss_pred             CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf             223322102420122211000112233333344553211135755----4421111222211101245666653101222
Q gi|254780921|r   65 KAEDEPEIAFSINAEGAGAIAKAADSIGIPCIYISTDYVFDGLSR----TPIDEFSPTNPLNIYGKSKLAGEEKVASYTN  140 (290)
Q Consensus        65 ~~e~~~~~~~~~Nv~~~~~l~~~~~~~~~~~I~iSS~~Vy~g~~~----~p~~E~d~~~P~~~Yg~sK~~~E~~v~~~~~  140 (290)
T Consensus        84 -----------Ln~~~~l~e~g~l~~~gV~vvgs~~eaI~iaeDr~~fke~m~eigi~~P-~~~~~~~~e~~~~~~~ig-  150 (400)
T COG0458          84 -----------LNAALELKEKGVLEKYGVEVVGSDPEAIEIAEDKKLFKEAMREIGIPVP-SRIAHSVEEADEIADEIG-  150 (400)
T ss_pred             -----------HHHHHHHHHHCCHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCHHHHHHHHHHCC-
T ss_conf             -----------4688998772645644977994587895564209999999998399988-412356777765576369-


Q ss_pred             CCCCCCCCCCEEC
Q ss_conf             3223555420003
Q gi|254780921|r  141 NYVILRTAWVYSI  153 (290)
Q Consensus       141 ~~~IlR~~~vyG~  153 (290)
T Consensus       151 ~PvIVrP~~~lGG  163 (400)
T COG0458         151 YPVIVKPSFGLGG  163 (400)
T ss_pred             CCEEEECCCCCCC
T ss_conf             9779806857888