HHsearch alignment for GI: 254780921 and conserved domain: COG1088
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane].
Probab=100.00 E-value=0 Score=306.78 Aligned_cols=274 Identities=22% Similarity=0.245 Sum_probs=223.5
Q ss_pred CEEEEECCCCHHHHHHHHHHHCC---CEEEEECHH---------------------HCCCCCHHHHHHHHHHCCCCEEEE
Q ss_conf 94999978897889999999649---859996136---------------------708789999999997559989997
Q gi|254780921|r 1 MKCLVIGNNGQIAQSLSSMCVQD---VEIIRVGRP---------------------DIDLLKPKDFASFFLSFSPDVIIN 56 (290)
Q Consensus 1 MkiLVtG~~G~iG~~l~~~l~~~---~~v~~~~r~---------------------~~D~~~~~~~~~~l~~~~pd~Vih 56 (290)
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~Vvh 80 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKEYQPDAVVH 80 (340)
T ss_pred CCEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 93799657515778999999960997528997523315778788864069971588545547999999997448875998
Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 8634454322332210242012221100011223333--3344553211135755--44211112222111012456666
Q gi|254780921|r 57 PAAYTAVDKAEDEPEIAFSINAEGAGAIAKAADSIGI--PCIYISTDYVFDGLSR--TPIDEFSPTNPLNIYGKSKLAGE 132 (290)
Q Consensus 57 ~Aa~~~~~~~e~~~~~~~~~Nv~~~~~l~~~~~~~~~--~~I~iSS~~Vy~g~~~--~p~~E~d~~~P~~~Yg~sK~~~E 132 (290)
T Consensus 81 fAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~~~~~FtE~tp~~PsSPYSASKAasD 160 (340)
T COG1088 81 FAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLDDDAFTETTPYNPSSPYSASKAASD 160 (340)
T ss_pred ECHHCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 11001332233570553400028799999999984666207994152102566678887544799999997404455678
Q ss_pred HHHCCCCC----CCCCCCCCCCEECCC--CCCCCEEECCCCCCCCEEECCC--CCCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 53101222----322355542000368--6320002011246652153045--545445223689999999984420244
Q gi|254780921|r 133 EKVASYTN----NYVILRTAWVYSIFG--SNFLLSMLRLAKERREISVVCD--QFGTPTSALQIARAIIQIAHNLIENSD 204 (290)
Q Consensus 133 ~~v~~~~~----~~~IlR~~~vyG~~~--~~~v~~~l~~~~~~~~i~~~~d--~~~~p~~v~D~a~~i~~~~~~~~~~~~ 204 (290)
T Consensus 161 ~lVray~~TYglp~~ItrcSNNYGPyqfpEKlIP~~I~nal~g~~lpvYGdG~~iRDWl~VeDh~~ai~~Vl~kg~~--- 237 (340)
T COG1088 161 LLVRAYVRTYGLPATITRCSNNYGPYQFPEKLIPLMIINALLGKPLPVYGDGLQIRDWLYVEDHCRAIDLVLTKGKI--- 237 (340)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEECCCCCEEEEEEEHHHHHHHHHHHHCCCC---
T ss_conf 99999998719966984477776887671556679999997399985436985402058717578899999956867---
Q ss_pred CCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCHHEEECCHHHHCCCCCCCC---CCCCCHHHHHHHHCCCCC-CHH
Q ss_conf 3344313762386667889999999999997279800057628588087689975---110086899996178999-989
Q gi|254780921|r 205 TSLRGIFHMTADGGPVSWADFAEYIFWESAERGGPYSKVYRIFTKQYPTKAHRPA---YSCLDCSKLANTHNIRIS-TWK 280 (290)
Q Consensus 205 ~~~~Giyn~~~~~~~~s~~e~a~~I~~~~~~~~~~~~~i~~~~~~~~~~~a~RP~---~~~Ld~~K~~~~lg~~~~-~~~ 280 (290)
T Consensus 238 ---GE~YNIgg~~E~-~Nlevv~~i~~~l~~~~~~~~~l-------i~~V~DRpGHD~RYaid~~Ki~~eLgW~P~~~fe 306 (340)
T COG1088 238 ---GETYNIGGGNER-TNLEVVKTICELLGKDKPDYRDL-------ITFVEDRPGHDRRYAIDASKIKRELGWRPQETFE 306 (340)
T ss_pred ---CCEEEECCCCCC-HHHHHHHHHHHHHCCCCCCHHHH-------EEECCCCCCCCCCEEECHHHHHHHCCCCCCCCHH
T ss_conf ---766871787520-07999999999867665110412-------4761678997501010667776542988678888
Q ss_pred HHHHHHHH
Q ss_conf 99999997
Q gi|254780921|r 281 EGVRNILV 288 (290)
Q Consensus 281 e~i~~~i~ 288 (290)
T Consensus 307 ~GlrkTv~ 314 (340)
T COG1088 307 TGLRKTVD 314 (340)
T ss_pred HHHHHHHH
T ss_conf 89999999