HHsearch alignment for GI: 254780921 and conserved domain: PRK09009
>PRK09009 C factor cell-cell signaling protein; Provisional.
Probab=99.46 E-value=2.9e-13 Score=93.87 Aligned_cols=175 Identities=15% Similarity=0.116 Sum_probs=104.9
Q ss_pred CEEEEECCCCHHHHHHHHHHHC-CC--EEEEECHH-------------HCCCCCHHHHHHHHHHC-CCCEEEECCCCCC-
Q ss_conf 9499997889788999999964-98--59996136-------------70878999999999755-9989997863445-
Q gi|254780921|r 1 MKCLVIGNNGQIAQSLSSMCVQ-DV--EIIRVGRP-------------DIDLLKPKDFASFFLSF-SPDVIINPAAYTA- 62 (290)
Q Consensus 1 MkiLVtG~~G~iG~~l~~~l~~-~~--~v~~~~r~-------------~~D~~~~~~~~~~l~~~-~pd~Vih~Aa~~~- 62 (290)
T Consensus 1 mnVLITGas~GIG~aia~~l~~~~~~~~v~~~~~~~~~~~~~~~v~~~~~Dvt~~~~i~~~~~~~~~iD~linnAGi~~~ 80 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLETYPDATVHATYRHHKPDFRHDNVQWHALDVTDEAEIKQLSEQFTQLDWLINCVGMLHT 80 (235)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 97999755639999999999856998099997377654445798389987479999999999870877899976752446
Q ss_pred ----CCC--CCCC---CCEEEEECCCCCCCCCCCC----CCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf ----432--2332---2102420122211000112----233-3333445532111357554421111222211101245
Q gi|254780921|r 63 ----VDK--AEDE---PEIAFSINAEGAGAIAKAA----DSI-GIPCIYISTDYVFDGLSRTPIDEFSPTNPLNIYGKSK 128 (290)
Q Consensus 63 ----~~~--~e~~---~~~~~~~Nv~~~~~l~~~~----~~~-~~~~I~iSS~~Vy~g~~~~p~~E~d~~~P~~~Yg~sK 128 (290)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~l~~~~~~~iv~isS~~---g~i~-----~~~~~g~~~Y~aSK 152 (235)
T PRK09009 81 QDKGPEKSLQSLDSDFFLQNITLNTLPSLLLAKHFTPLLKQSESARFAVISAKV---GSIS-----DNRLGGWYSYRASK 152 (235)
T ss_pred CCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE---CCCC-----CCCCCCCHHHHHHH
T ss_conf 777764686778999999999886199999999999999860787640122234---1577-----88888623669999
Q ss_pred HHHHHHHCCCCCC------CC---CCCCCCCEECCCCCCCCEEECCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 6666531012223------22---3555420003686320002011246652153045545445223689999999984
Q gi|254780921|r 129 LAGEEKVASYTNN------YV---ILRTAWVYSIFGSNFLLSMLRLAKERREISVVCDQFGTPTSALQIARAIIQIAHN 198 (290)
Q Consensus 129 ~~~E~~v~~~~~~------~~---IlR~~~vyG~~~~~~v~~~l~~~~~~~~i~~~~d~~~~p~~v~D~a~~i~~~~~~ 198 (290)
T Consensus 153 aAl~~lt~~la~E~~~~~~~i~V~~i~PG~v~T~--------m~~~~~~~~p~-------~r~~~PeeiA~~i~~L~s~ 216 (235)
T PRK09009 153 AALNMFLKTLSIEWQRSLKHGVVLALHPGTTDTP--------LSKPFQQNVPK-------GKLFTPEYVAQCLLGIIAN 216 (235)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC--------CCCHHHHCCCC-------CCCCCHHHHHHHHHHHHCC
T ss_conf 9999999999999764269968999814865671--------23067857998-------8882999999999999716