HHsearch alignment for GI: 254780921 and conserved domain: PRK09186
>PRK09186 flagellin modification protein A; Provisional.
Probab=99.35 E-value=1.9e-12 Score=89.28 Aligned_cols=185 Identities=15% Similarity=0.086 Sum_probs=110.8
Q ss_pred EEEEECCCCHHHHHHHHHH-HCCCEEEEECHH----------------------HCCCCCHHHHHHHHHHC-----CCCE
Q ss_conf 4999978897889999999-649859996136----------------------70878999999999755-----9989
Q gi|254780921|r 2 KCLVIGNNGQIAQSLSSMC-VQDVEIIRVGRP----------------------DIDLLKPKDFASFFLSF-----SPDV 53 (290)
Q Consensus 2 kiLVtG~~G~iG~~l~~~l-~~~~~v~~~~r~----------------------~~D~~~~~~~~~~l~~~-----~pd~ 53 (290)
T Consensus 6 ~~lVTGgs~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~Dvt~~~~v~~~~~~~~~~~g~id~ 85 (255)
T PRK09186 6 TILITGAGGLIGSALVKAILEAGGIVIAADINKEALNKLLESLGTIEKTKLTLVELDITDQESLEEFLSKSQERYGKIDG 85 (255)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCE
T ss_conf 89997958689999999999879999999698899999999998705980799984689999999999999998199778
Q ss_pred EEECCCCCCC-------CCCCCCCCEEEEECCCCCCCCCCCCC----CCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9978634454-------32233221024201222110001122----333-33344553211135755442111122221
Q gi|254780921|r 54 IINPAAYTAV-------DKAEDEPEIAFSINAEGAGAIAKAAD----SIG-IPCIYISTDYVFDGLSRTPIDEFSPTNPL 121 (290)
Q Consensus 54 Vih~Aa~~~~-------~~~e~~~~~~~~~Nv~~~~~l~~~~~----~~~-~~~I~iSS~~Vy~g~~~~p~~E~d~~~P~ 121 (290)
T Consensus 86 lVnnA~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IVnisSi~g~~~~~~~~~~g~~~~~~- 164 (255)
T PRK09186 86 AVNCAYPRNKQYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGGSLVNISSIYGVVAPKFEIYEGTSMTSP- 164 (255)
T ss_pred EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHCCCCCCCCCCCCCCCH-
T ss_conf 9975766787677770109999999999998399999999999988742897389956678734764211268765446-
Q ss_pred CCCHHHHHHHHHHHCCCCCCC---CC----CCCCCCEECCCCCCCCEEECCCCCCCCEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf 110124566665310122232---23----55542000368632000201124665215304554544522368999999
Q gi|254780921|r 122 NIYGKSKLAGEEKVASYTNNY---VI----LRTAWVYSIFGSNFLLSMLRLAKERREISVVCDQFGTPTSALQIARAIIQ 194 (290)
Q Consensus 122 ~~Yg~sK~~~E~~v~~~~~~~---~I----lR~~~vyG~~~~~~v~~~l~~~~~~~~i~~~~d~~~~p~~v~D~a~~i~~ 194 (290)
T Consensus 165 ~~Y~asKaal~~ltr~lA~e~a~~gIrVN~VaPG~i~~~----~~~~~~~~~~~~~~~-------~~~~~p~dia~~v~f 233 (255)
T PRK09186 165 VEYAAIKSGIIHLTKYLAKYFKDSNIRVNCVSPGGILDN----QPEAFLNAYKKSCNG-------KGMLDPEDICGSLVF 233 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCC----CCHHHHHHHHHHCCC-------CCCCCHHHHHHHHHH
T ss_conf 767998899999999999996758989999855768899----989999999863557-------799899999999999
Q ss_pred HHHH
Q ss_conf 9984
Q gi|254780921|r 195 IAHN 198 (290)
Q Consensus 195 ~~~~ 198 (290)
T Consensus 234 L~Sd 237 (255)
T PRK09186 234 LLSD 237 (255)
T ss_pred HHCC
T ss_conf 9570