HHsearch alignment for GI: 254780921 and conserved domain: cd00755
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=91.24 E-value=0.44 Score=25.30 Aligned_cols=94 Identities=15% Similarity=0.217 Sum_probs=50.8
Q ss_pred EEEEECCCCHHHHHHHHHHHC-CC-EEEEECHHHC--------------CC--CCHHHHHHHHHHCCCCEEEECCCCC-C
Q ss_conf 499997889788999999964-98-5999613670--------------87--8999999999755998999786344-5
Q gi|254780921|r 2 KCLVIGNNGQIAQSLSSMCVQ-DV-EIIRVGRPDI--------------DL--LKPKDFASFFLSFSPDVIINPAAYT-A 62 (290)
Q Consensus 2 kiLVtG~~G~iG~~l~~~l~~-~~-~v~~~~r~~~--------------D~--~~~~~~~~~l~~~~pd~Vih~Aa~~-~ 62 (290)
T Consensus 13 ~V~v~G~-GGvGs~~a~~LarsGVG~l~lvD~D~v~~SNLnRQ~~a~~~~iG~~K~~~~~~rl~~iNP~~~v~~~~~~~~ 91 (231)
T cd00755 13 HVAVVGL-GGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEEFLT 91 (231)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCEECCCCHHHHHCCCHHHCCCCCHHHHHHHHHHHCCCCEEEEEHHHCC
T ss_conf 7899888-636899999999809975999719990454444330165633699728999999998799988998625159
Q ss_pred CCCCC----CCCCEEEE--ECCCCCCCCCCCCCCCCCCCC
Q ss_conf 43223----32210242--012221100011223333334
Q gi|254780921|r 63 VDKAE----DEPEIAFS--INAEGAGAIAKAADSIGIPCI 96 (290)
Q Consensus 63 ~~~~e----~~~~~~~~--~Nv~~~~~l~~~~~~~~~~~I 96 (290)
T Consensus 92 ~~n~~~ll~~~~D~VvDaiD~~~~K~~l~~~c~~~~iplI 131 (231)
T cd00755 92 PDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVI 131 (231)
T ss_pred HHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 9899998454777785344248779999999998299089