HHsearch alignment for GI: 254780921 and conserved domain: cd01338
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.57 E-value=0.0012 Score=39.80 Aligned_cols=95 Identities=19% Similarity=0.129 Sum_probs=51.7
Q ss_pred CEEEEECCCCHHHHHHHHHHHCC----C----EEEEECHHH---------CCCCCH-----------HHHHHHHHHCCCC
Q ss_conf 94999978897889999999649----8----599961367---------087899-----------9999999755998
Q gi|254780921|r 1 MKCLVIGNNGQIAQSLSSMCVQD----V----EIIRVGRPD---------IDLLKP-----------KDFASFFLSFSPD 52 (290)
Q Consensus 1 MkiLVtG~~G~iG~~l~~~l~~~----~----~v~~~~r~~---------~D~~~~-----------~~~~~~l~~~~pd 52 (290)
T Consensus 3 ~KV~IiGAaG~IG~~la~~la~g~l~g~~~~v~l~L~Di~~~~~~l~G~amDl~~~a~~~~~~v~~~~~~~~a~~~a--D 80 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDA--D 80 (322)
T ss_pred EEEEEECCCCHHHHHHHHHHHHCHHCCCCCEEEEEEECCCCCCCCCCEEEEEHHHCCCCCCCCEEEECCHHHHHCCC--C
T ss_conf 09999899968999999999711130799726999975757566676577445326765458779748878983788--7
Q ss_pred EEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC---CCCCCCCC
Q ss_conf 999786344543223322102420122211000112233---33334455
Q gi|254780921|r 53 VIINPAAYTAVDKAEDEPEIAFSINAEGAGAIAKAADSI---GIPCIYIS 99 (290)
Q Consensus 53 ~Vih~Aa~~~~~~~e~~~~~~~~~Nv~~~~~l~~~~~~~---~~~~I~iS 99 (290)
T Consensus 81 vVvitaG~prkPG--~tR~DLl~~Na~I~~~~~~~i~~~a~p~~~vivvs 128 (322)
T cd01338 81 WALLVGAKPRGPG--MERADLLKANGKIFTAQGKALNDVASRDVKVLVVG 128 (322)
T ss_pred EEEEECCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 8999368789989--81899999868999999999997579883899957