HHsearch alignment for GI: 254780921 and conserved domain: cd05290
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.68 E-value=0.037 Score=31.36 Aligned_cols=95 Identities=18% Similarity=0.206 Sum_probs=56.7
Q ss_pred EEEEECCCCHHHHHHHHHHHC-C--CEEEEECHHH-------CCCCCHHHH------------HHHHHHCCCCEEEECCC
Q ss_conf 499997889788999999964-9--8599961367-------087899999------------99997559989997863
Q gi|254780921|r 2 KCLVIGNNGQIAQSLSSMCVQ-D--VEIIRVGRPD-------IDLLKPKDF------------ASFFLSFSPDVIINPAA 59 (290)
Q Consensus 2 kiLVtG~~G~iG~~l~~~l~~-~--~~v~~~~r~~-------~D~~~~~~~------------~~~l~~~~pd~Vih~Aa 59 (290)
T Consensus 1 KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~Di~~~~a~g~a~Dl~h~~~~~~~~~~~~~~~~y~~~~~--aDiVVitaG 77 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCAD--ADIIVITAG 77 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEECCCCHHHHCC--CCEEEECCC
T ss_conf 9899996-9899999999985699887999928898237999987612035899865866799899469--999998677
Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCC--CCCCCC
Q ss_conf 4454322332210242012221100011223333--334455
Q gi|254780921|r 60 YTAVDKAEDEPEIAFSINAEGAGAIAKAADSIGI--PCIYIS 99 (290)
Q Consensus 60 ~~~~~~~e~~~~~~~~~Nv~~~~~l~~~~~~~~~--~~I~iS 99 (290)
T Consensus 78 ~~~kpg~t~~R~dL~~~N~~I~~~i~~~i~~~~p~~i~ivvs 119 (307)
T cd05290 78 PSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILIT 119 (307)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 765899983588888857899999999986139974999847