HHsearch alignment for GI: 254780921 and conserved domain: pfam01113
>pfam01113 DapB_N Dihydrodipicolinate reductase, N-terminus. Dihydrodipicolinate reductase (DapB) reduces the alpha,beta-unsaturated cyclic imine, dihydro-dipicolinate. This reaction is the second committed step in the biosynthesis of L-lysine and its precursor meso-diaminopimelate, which are critical for both protein and cell wall biosynthesis. The N-terminal domain of DapB binds the dinucleotide NADPH.
Probab=96.86 E-value=0.0017 Score=38.85 Aligned_cols=80 Identities=26% Similarity=0.381 Sum_probs=51.0
Q ss_pred CEEEEECCCCHHHHHHHHHHHC--CCEEEE-ECHHHC-----CCCC---------HHHHHHHHHHCCCCEEEECCCCCCC
Q ss_conf 9499997889788999999964--985999-613670-----8789---------9999999975599899978634454
Q gi|254780921|r 1 MKCLVIGNNGQIAQSLSSMCVQ--DVEIIR-VGRPDI-----DLLK---------PKDFASFFLSFSPDVIINPAAYTAV 63 (290)
Q Consensus 1 MkiLVtG~~G~iG~~l~~~l~~--~~~v~~-~~r~~~-----D~~~---------~~~~~~~l~~~~pd~Vih~Aa~~~~ 63 (290)
T Consensus 1 ikV~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--~~~~~~DVvIDFS----- 73 (122)
T pfam01113 1 IKVAVVGASGRMGRELIKAILEAPDFELVAAVDRPGSSLLGSDAGELAGPLGVPVTDDLE--EVLADADVLIDFT----- 73 (122)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEECCCHH--HHCCCCCEEEEEC-----
T ss_conf 989998898878999999998589968999994389612254310014678711124477--7515788899906-----
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3223322102420122211000112233333344553
Q gi|254780921|r 64 DKAEDEPEIAFSINAEGAGAIAKAADSIGIPCIYIST 100 (290)
Q Consensus 64 ~~~e~~~~~~~~~Nv~~~~~l~~~~~~~~~~~I~iSS 100 (290)
T Consensus 74 -----~p--------~~~~~~~~~~~~~~~~~ViGTT 97 (122)
T pfam01113 74 -----TP--------EATLENLELALKHGKPLVIGTT 97 (122)
T ss_pred -----CH--------HHHHHHHHHHHHCCCCEEEECC
T ss_conf -----87--------8999999999967998899899