RPSBLAST alignment for GI: 254780921 and conserved domain: pfam04321
>gnl|CDD|113104 pfam04321, RmlD_sub_bind, RmlD substrate binding domain. L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesized by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide. Length = 284
Score = 328 bits (842), Expect = 2e-90
Identities = 131/285 (45%), Positives = 179/285 (62%), Gaps = 7/285 (2%)
Query: 4 LVIGNNGQIAQSL-SSMCVQDVEIIRVGRPDIDLLKPKDFASFFLSFSPDVIINPAAYTA 62
LV G NGQ+ + L + + VE++ + RP++DL P+ A+ PDV++N AAYTA
Sbjct: 2 LVTGANGQLGRELTRLLAERGVEVVALDRPELDLTDPEAVAALVREARPDVVVNAAAYTA 61
Query: 63 VDKAEDEPEIAFSINAEGAGAIAKAADSIGIPCIYISTDYVFDGLSRTPIDEFSPTNPLN 122
VDKAE EPE+A+++NA G G +A+A + G P I+ISTDYVFDG P E PT PLN
Sbjct: 62 VDKAESEPELAYAVNALGPGNLAEACAARGAPLIHISTDYVFDGAKGGPYREDDPTGPLN 121
Query: 123 IYGKSKLAGEEKVASYTNNYVILRTAWVYSIFGSNFLLSMLRLAKERREISVVCDQFGTP 182
+YG++KLAGE+ V + ++ILRTAWVY +G+NF+ +MLRLA ER E+ VV DQ G+P
Sbjct: 122 VYGRTKLAGEQAVLAANPRHLILRTAWVYGEYGNNFVKTMLRLAAERDELRVVDDQLGSP 181
Query: 183 TSALQIARAIIQIAHNLIENSDTSLRGIFHMTADGGPVSWADFAEYIFWESAERGGPYSK 242
TSA +A A++ + + L G +H+ G SW DFA IF E+ GG +
Sbjct: 182 TSARDLADALLALIRKRLRGPA--LAGTYHLAGSGE-TSWYDFARAIFDEAGADGG---R 235
Query: 243 VYRIFTKQYPTKAHRPAYSCLDCSKLANTHNIRISTWKEGVRNIL 287
V I T +YPT A RPA S LD SKL T I + W+E + +L
Sbjct: 236 VRPIPTAEYPTPARRPANSVLDTSKLEATFGIPLPDWREALAEVL 280