RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780921|ref|YP_003065334.1| dTDP-4-dehydrorhamnose reductase [Candidatus Liberibacter asiaticus str. psy62] (290 letters) >gnl|CDD|113104 pfam04321, RmlD_sub_bind, RmlD substrate binding domain. L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesized by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide. Length = 284 Score = 328 bits (842), Expect = 2e-90 Identities = 131/285 (45%), Positives = 179/285 (62%), Gaps = 7/285 (2%) Query: 4 LVIGNNGQIAQSL-SSMCVQDVEIIRVGRPDIDLLKPKDFASFFLSFSPDVIINPAAYTA 62 LV G NGQ+ + L + + VE++ + RP++DL P+ A+ PDV++N AAYTA Sbjct: 2 LVTGANGQLGRELTRLLAERGVEVVALDRPELDLTDPEAVAALVREARPDVVVNAAAYTA 61 Query: 63 VDKAEDEPEIAFSINAEGAGAIAKAADSIGIPCIYISTDYVFDGLSRTPIDEFSPTNPLN 122 VDKAE EPE+A+++NA G G +A+A + G P I+ISTDYVFDG P E PT PLN Sbjct: 62 VDKAESEPELAYAVNALGPGNLAEACAARGAPLIHISTDYVFDGAKGGPYREDDPTGPLN 121 Query: 123 IYGKSKLAGEEKVASYTNNYVILRTAWVYSIFGSNFLLSMLRLAKERREISVVCDQFGTP 182 +YG++KLAGE+ V + ++ILRTAWVY +G+NF+ +MLRLA ER E+ VV DQ G+P Sbjct: 122 VYGRTKLAGEQAVLAANPRHLILRTAWVYGEYGNNFVKTMLRLAAERDELRVVDDQLGSP 181 Query: 183 TSALQIARAIIQIAHNLIENSDTSLRGIFHMTADGGPVSWADFAEYIFWESAERGGPYSK 242 TSA +A A++ + + L G +H+ G SW DFA IF E+ GG + Sbjct: 182 TSARDLADALLALIRKRLRGPA--LAGTYHLAGSGE-TSWYDFARAIFDEAGADGG---R 235 Query: 243 VYRIFTKQYPTKAHRPAYSCLDCSKLANTHNIRISTWKEGVRNIL 287 V I T +YPT A RPA S LD SKL T I + W+E + +L Sbjct: 236 VRPIPTAEYPTPARRPANSVLDTSKLEATFGIPLPDWREALAEVL 280 >gnl|CDD|31288 COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]. Length = 281 Score = 283 bits (725), Expect = 4e-77 Identities = 123/288 (42%), Positives = 171/288 (59%), Gaps = 12/288 (4%) Query: 1 MKCLVIGNNGQIAQSLSSMCVQDVEIIRVGRPDIDLLKPKDFASFFLSFSPDVIINPAAY 60 MK L+ G NGQ+ L + E+I R ++D+ P PDV+IN AAY Sbjct: 1 MKILITGANGQLGTELRRALPGEFEVIATDRAELDITDPDAVLEVIRETRPDVVINAAAY 60 Query: 61 TAVDKAEDEPEIAFSINAEGAGAIAKAADSIGIPCIYISTDYVFDGLSRTPIDEFSPTNP 120 TAVDKAE EPE+AF++NA GA +A+AA +G ++ISTDYVFDG P E NP Sbjct: 61 TAVDKAESEPELAFAVNATGAENLARAAAEVGARLVHISTDYVFDGEKGGPYKETDTPNP 120 Query: 121 LNIYGKSKLAGEEKVASYTNNYVILRTAWVYSIFGSNFLLSMLRLAKERREISVVCDQFG 180 LN+YG+SKLAGEE V + ++ILRT+WVY +G+NF+ +MLRLAKE +E+ VV DQ+G Sbjct: 121 LNVYGRSKLAGEEAVRAAGPRHLILRTSWVYGEYGNNFVKTMLRLAKEGKELKVVDDQYG 180 Query: 181 TPTSALQIARAIIQIAHNLIENSDTSLRGIFHMTADGGPVSWADFAEYIFWESAERGGPY 240 +PT +A AI+++ E G++H+ G SW +FA+ IF E G Sbjct: 181 SPTYTEDLADAILELLEKEKEG------GVYHLVNS-GECSWYEFAKAIF----EEAGVD 229 Query: 241 SKVYR-IFTKQYPTKAHRPAYSCLDCSKLANTHNIRISTWKEGVRNIL 287 +V I + +YPT A RPA S LD KL + + W+E ++ +L Sbjct: 230 GEVIEPIASAEYPTPAKRPANSSLDTKKLEKAFGLSLPEWREALKALL 277 >gnl|CDD|144821 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. This family of proteins utilize NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions. Length = 235 Score = 83.9 bits (208), Expect = 5e-17 Identities = 51/200 (25%), Positives = 83/200 (41%), Gaps = 27/200 (13%) Query: 4 LVIGNNGQIAQSLSSMCVQ-DVEIIRVGRPD----------------IDLLKPKDFASFF 46 LV G G I +L +Q E+I +GR DL P Sbjct: 2 LVTGGTGFIGSALVRRLLQEGYEVIVLGRRRRSESLNTGRIRFRFHEGDLTDPDALERLL 61 Query: 47 LSFSPDVIINPAAYTAVDKAEDEPEIAFSINAEGAGAIAKAADSIGIP-CIYISTDYVFD 105 PD +I+ AA + V + ++P N G + +AA G+ ++ S+ V+ Sbjct: 62 AEVQPDAVIHLAAQSGVGASFEDPAEFIRANVLGTLNLLEAARRAGVKRFVFASSSEVYG 121 Query: 106 GLSRTPIDEFSPTNPLNIYGKSKLAGEEKVASYTN----NYVILRTAWVYS-----IFGS 156 ++ PI E +P PL+ Y +KLAGE V +Y VILR VY F + Sbjct: 122 DVADPPITEDTPLGPLSPYAAAKLAGERLVLAYARAYGLRAVILRLFNVYGPGDNDTFVT 181 Query: 157 NFLLSMLRLAKERREISVVC 176 + + +++R E + ++ Sbjct: 182 HVIPALIRRILEGKPEILLL 201 >gnl|CDD|30800 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]. Length = 314 Score = 77.7 bits (190), Expect = 4e-15 Identities = 77/319 (24%), Positives = 118/319 (36%), Gaps = 46/319 (14%) Query: 1 MKCLVIGNNGQIAQSLSSMCVQ---DVEIIRVGRPDIDLLKPK-----------DFASFF 46 M+ LV G G I L + DV + R +D L D Sbjct: 1 MRILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLLSGVEFVVLDLTDRDLVDEL 60 Query: 47 LSFSPDVIINPAAYTAV-DKAEDEPEIAFSINAEGAGAIAKAADSIGIP-CIYISTDYVF 104 PD +I+ AA ++V D +P +N +G + +AA + G+ ++ S+ V Sbjct: 61 AKGVPDAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASSVSVV 120 Query: 105 DG-LSRTPIDE-FSPTNPLNIYGKSKLAGEEKVASYTN----NYVILRTAWVY------- 151 G PIDE P PLN YG SKLA E+ + +Y VILR VY Sbjct: 121 YGDPPPLPIDEDLGPPRPLNPYGVSKLAAEQLLRAYARLYGLPVVILRPFNVYGPGDKPD 180 Query: 152 --SIFGSNFLLSMLRLAKERREISVVCDQFGTPTSALQIARAIIQIAHNLIENSDTSLRG 209 S S F+ +L+ + I Q +A A++ N G Sbjct: 181 LSSGVVSAFIRQLLK-GEPIIVIGGDGSQTRDFVYVDDVADALLLALEN-------PDGG 232 Query: 210 IFHMTADGGPVSWADFAEYIFWESAERGGPYSKVYRIFTKQYPTKAHRPAYSCLDCSKLA 269 +F++ + ++ + AE + AE G SK I + LD SK Sbjct: 233 VFNIGSGTAEITVRELAEAV----AEAVG--SKAPLIVYIPLGRRGDLREGKLLDISKAR 286 Query: 270 NTHNIR-ISTWKEGVRNIL 287 + +EG+ + L Sbjct: 287 AALGWEPKVSLEEGLADTL 305 >gnl|CDD|36643 KOG1430, KOG1430, KOG1430, C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism, Amino acid transport and metabolism]. Length = 361 Score = 63.4 bits (154), Expect = 7e-11 Identities = 54/260 (20%), Positives = 92/260 (35%), Gaps = 39/260 (15%) Query: 2 KCLVIGNNGQIAQSLSSMCVQDVEIIRVGRPDIDLLKPKDFASFFLSFSPDV-------- 53 LV G +G + Q L +++ + + D + A S V Sbjct: 6 SVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGFRSGRVTVILGDLL 65 Query: 54 -------------IINPAAYTAVDKAEDEPEIAFSINAEGAGAIAKAADSIGIPC-IYIS 99 +++ AA D E++ ++A +N G + +A +G+ IY S Sbjct: 66 DANSISNAFQGAVVVHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVKRLIYTS 125 Query: 100 TDYVFDGLSRTPI-DEFSPT--NPLNIYGKSKLAGEEKV----ASYTNNYVILRTAWVYS 152 + YV G DE P ++ YG+SK E+ V S LR +Y Sbjct: 126 SAYVVFGGEPIINGDESLPYPLKHIDPYGESKALAEKLVLEANGSDDLYTCALRPPGIYG 185 Query: 153 IFGSNFLLSMLRLAKERREISVVCD-----QFGTPTSALQIARAIIQIAHNLIENSDTSL 207 L ++ K + + D F T +A A I A L++ S + + Sbjct: 186 PGDKRLLPKIVEALKNGGFLFKIGDGENLNDF---TYGENVAWAHILAARALLDKSPS-V 241 Query: 208 RGIFHMTADGGPV-SWADFA 226 G F+ D PV + + Sbjct: 242 NGQFYFITDDTPVRFFDFLS 261 >gnl|CDD|31284 COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]. Length = 329 Score = 58.3 bits (141), Expect = 2e-09 Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%) Query: 35 DLLKPKDFASFFLSFSPDVIINPAAYTAVDKAEDEPEIAFSINAEGAGAIAKAADSIGI- 93 DLL + F D +++ AA +V ++ P + N G + +A G+ Sbjct: 52 DLLDRALLTAVFEENKIDAVVHFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVK 111 Query: 94 PCIYISTDYVFDGLSRTPIDEFSPTNPLNIYGKSKLAGEEKVASYTN----NYVILR 146 I+ ST V+ + +PI E SP P+N YG+SKL EE + VILR Sbjct: 112 KFIFSSTAAVYGEPTTSPISETSPLAPINPYGRSKLMSEEILRDAAKANPFKVVILR 168 >gnl|CDD|31283 COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]. Length = 588 Score = 53.0 bits (127), Expect = 1e-07 Identities = 28/111 (25%), Positives = 40/111 (36%), Gaps = 15/111 (13%) Query: 46 FLSFSPDVIINPAAYTAVDKAEDEPEIAFSINAEGAGAIAKAADSIGIP-CIYISTDYVF 104 D++ + AA V E PE A N G +A+AA G+ + ISTD Sbjct: 321 MEGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKA- 379 Query: 105 DGLSRTPIDEFSPTNPLNIYGKSKLAGEEKVASYTNNYVILRTAWVYSIFG 155 NP N+ G +K E+ + N T + FG Sbjct: 380 -------------VNPTNVMGATKRLAEKLFQAANRNVSGTGTRFCVVRFG 417 >gnl|CDD|31285 COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]. Length = 340 Score = 51.0 bits (122), Expect = 4e-07 Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 4/112 (3%) Query: 35 DLLKPKDFASFFLSFSPDVIINPAAYTAVDKAEDEPEIAFSINAEGAGAIAKAA--DSIG 92 D+ + F + PD +++ AA + VD++ D P N G + +AA Sbjct: 59 DICDRELVDRLFKEYQPDAVVHFAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGK 118 Query: 93 IPCIYISTDYVFDGLSRT--PIDEFSPTNPLNIYGKSKLAGEEKVASYTNNY 142 +ISTD V+ L E +P NP + Y SK A + V +Y Y Sbjct: 119 FRFHHISTDEVYGDLGLDDDAFTETTPYNPSSPYSASKAASDLLVRAYVRTY 170 >gnl|CDD|35966 KOG0747, KOG0747, KOG0747, Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism]. Length = 331 Score = 48.8 bits (116), Expect = 2e-06 Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 9/132 (6%) Query: 52 DVIINPAAYTAVDKAEDEPEIAFSINAEGAGAIAKAADSIG--IPCIYISTDYVF-DGLS 108 D +I+ AA T VD++ + N + +A G +++STD V+ D Sbjct: 82 DTVIHFAAQTHVDRSFGDSFEFTKNNILSTHVLLEAVRVSGNIRRFVHVSTDEVYGDSDE 141 Query: 109 RTPIDEFSPTNPLNIYGKSKLAGEEKVASYTNNY----VILRTAWVY--SIFGSNFLLSM 162 + E S NP N Y SK A E V SY +Y V R VY + + + Sbjct: 142 DAVVGEASLLNPTNPYAASKAAAEMLVRSYGRSYGLPVVTTRMNNVYGPNQYPEKLIPKF 201 Query: 163 LRLAKERREISV 174 ++LA +E + Sbjct: 202 IKLAMRGKEYPI 213 >gnl|CDD|36585 KOG1371, KOG1371, KOG1371, UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]. Length = 343 Score = 47.9 bits (114), Expect = 3e-06 Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 6/118 (5%) Query: 35 DLLKPKDFASFFLSFSPDVIINPAAYTAVDKAEDEPEIAFSINAEGAGAIAKAADSIGIP 94 DL + F D +++ AA AV ++ + P + N G + + + + Sbjct: 62 DLNDAEALEKLFSEVKFDAVMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHNVK 121 Query: 95 -CIYISTDYVFDGLSRTPIDEFSPT-NPLNIYGKSKLAGEEKVASYTNNY----VILR 146 ++ S+ V+ ++ PI E PT P N YGK+K A EE + Y Y LR Sbjct: 122 ALVFSSSATVYGLPTKVPITEEDPTDQPTNPYGKTKKAIEEIIHDYNKAYGWKVTGLR 179 >gnl|CDD|145720 pfam02719, Polysacc_synt_2, Polysaccharide biosynthesis protein. This is a family of diverse bacterial polysaccharide biosynthesis proteins including the CapD protein, WalL protein mannosyl-transferase and several putative epimerases (e.g. WbiI). Length = 280 Score = 43.2 bits (103), Expect = 8e-05 Identities = 25/97 (25%), Positives = 35/97 (36%), Gaps = 16/97 (16%) Query: 48 SFSPDVIINPAAYTAVDKAEDEPEIAFSINAEGAGAIAKAADSIGIPC-IYISTDYVFDG 106 + D + + AA V E P A N G +A+AA G+ + ISTD Sbjct: 71 EYGVDTVFHAAALKHVPLVEYNPMEAIKTNVLGTENVAEAAIENGVEKFVLISTDKA--- 127 Query: 107 LSRTPIDEFSPTNPLNIYGKSKLAGEEKVASYTNNYV 143 NP N+ G +K EK+ N Sbjct: 128 -----------VNPTNVMGATKRLA-EKLFQAANRES 152 >gnl|CDD|31286 COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]. Length = 345 Score = 38.7 bits (90), Expect = 0.002 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 3/95 (3%) Query: 51 PDVIINPAAYTAVDKAEDEPEIAFSINAEGAGAIAKAADSIGIPCIYI---STDYVFDGL 107 PD I N AA + V + ++PE ++A G + +A +G ST ++ + Sbjct: 79 PDEIYNLAAQSHVGVSFEQPEYTADVDAIGTLRLLEAIRILGEKKTRFYQASTSELYGLV 138 Query: 108 SRTPIDEFSPTNPLNIYGKSKLAGEEKVASYTNNY 142 P E +P P + Y +KL +Y +Y Sbjct: 139 QEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESY 173 >gnl|CDD|73326 cd02759, MopB_Acetylene-hydratase, The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.. Length = 477 Score = 32.2 bits (73), Expect = 0.17 Identities = 27/120 (22%), Positives = 44/120 (36%), Gaps = 17/120 (14%) Query: 153 IFGSNFLLSMLRLAKERR-----EISVVCDQFGTPTSALQIARAIIQIAHNLIENSDTS- 206 +FG+N L S A + VV D F TPT+ L A ++ +A +L Sbjct: 335 VFGTNPLASYADTAPVLEALKALDFIVVVDLFMTPTAML--ADIVLPVAMSLERPGLRGG 392 Query: 207 ------LRGIFHMTADGGPVSWADFAEYIFWESAERGGPYSKVYRIFTKQYPTKAHRPAY 260 ++ G + +D+ I E +R GP Y + K +P + Sbjct: 393 FEAENFVQLRQKAVEPYGE-AKSDY--EIVLELGKRLGPEEAEYYKYEKGLLRPDGQPGF 449 >gnl|CDD|48433 cd00727, malate_synt_A, Malate synthase A (MSA), present in some bacteria, plants and fungi. Prokaryotic MSAs tend to be monomeric, whereas eukaryotic enzymes are homomultimers. In general, malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA, which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.. Length = 511 Score = 28.3 bits (63), Expect = 2.6 Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 6/35 (17%) Query: 212 HMTADGGPVSWA--DFAEYIFW---ESAERG-GPY 240 H+ DG PVS + DF Y F RG GPY Sbjct: 153 HVLVDGEPVSGSLFDFGLYFFHNAKALLARGSGPY 187 >gnl|CDD|37219 KOG2008, KOG2008, KOG2008, BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]. Length = 426 Score = 28.2 bits (62), Expect = 2.7 Identities = 8/36 (22%), Positives = 13/36 (36%) Query: 169 RREISVVCDQFGTPTSALQIARAIIQIAHNLIENSD 204 R E F T L+ A+ + +A + D Sbjct: 82 RLEAQKAAQDFERATEVLRAAKEQVSLAEQSLLEDD 117 >gnl|CDD|32700 COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]. Length = 426 Score = 27.9 bits (62), Expect = 3.7 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 6/68 (8%) Query: 74 FSINAEGAGAIAKAADSIGIPCIYISTDYVFDGLSRTPIDEFSPTNPLNIYGK----SKL 129 F A AG + +P IY +T YVFD + F P NIY + + Sbjct: 8 FETLAVHAGQEDPTTGARAVP-IYQTTSYVFDD-TDHAAALFGLKEPGNIYTRIMNPTTD 65 Query: 130 AGEEKVAS 137 EE++A+ Sbjct: 66 VLEERIAA 73 >gnl|CDD|144973 pfam01578, Cytochrom_C_asm, Cytochrome C assembly protein. This family consists of various proteins involved in cytochrome c assembly from mitochondria and bacteria; CycK from Rhizobium, CcmC from E. coli and Paracoccus denitrificans and orf240 from wheat mitochondria. The members of this family are probably integral membrane proteins with six predicted transmembrane helices. It has been proposed that members of this family comprise a membrane component of an ABC (ATP binding cassette) transporter complex. It is also proposed that this transporter is necessary for transport of some component needed for cytochrome c assembly. One member CycK contains a putative heme-binding motif, orf240 also contains a putative heme-binding motif and is a proposed ABC transporter with c-type heme as its proposed substrate. However it seems unlikely that all members of this family transport heme nor c-type apocytochromes because CcmC in the putative CcmABC transporter transports neither. Length = 211 Score = 27.3 bits (61), Expect = 4.4 Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 1/47 (2%) Query: 151 YSIFGSNFLLSMLRLAKERREISVVCDQFGTPTSALQ-IARAIIQIA 196 Y+ LLS+ L +R + + P L ++ II I Sbjct: 83 YATLIIAALLSIALLLIDRAKKKLKNSNNLPPLKTLDRLSYRIILIG 129 >gnl|CDD|30965 COG0620, MetE, Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]. Length = 330 Score = 27.2 bits (60), Expect = 4.9 Identities = 20/88 (22%), Positives = 28/88 (31%), Gaps = 15/88 (17%) Query: 23 DVEIIRVGRPDIDLLKPKDFASFFLSFSPDVIINPAAYTA-VDKAEDEPEIAFSINAEGA 81 DV I R ++LL+ D I K E EIA Sbjct: 237 DVIDIETSRSRMELLEV------LEEVKYDKEIGLGVVDIHSPKVESVEEIA-------- 282 Query: 82 GAIAKAADSIGIPCIYISTDYVFDGLSR 109 I KA + + +Y++ D L R Sbjct: 283 ARIRKALERVPPERLYVNPDCGLKTLPR 310 >gnl|CDD|34926 COG5351, COG5351, Uncharacterized protein conserved in bacteria [Function unknown]. Length = 367 Score = 27.3 bits (60), Expect = 5.3 Identities = 14/49 (28%), Positives = 19/49 (38%) Query: 206 SLRGIFHMTADGGPVSWADFAEYIFWESAERGGPYSKVYRIFTKQYPTK 254 S++G F DGG + A E + E A G P + P K Sbjct: 28 SVKGTFDHPQDGGTMEIAREQESLQMEDAYEGDPGQSALLRESDFTPDK 76 >gnl|CDD|145956 pfam03081, Exo70, Exo70 exocyst complex subunit. The Exo70 protein forms one subunit of the exocyst complex. First discovered in S. cerevisiae, Exo70 and other exocyst proteins have been observed in several other eukaryotes, including humans. In S. cerevisiae, the exocyst complex is involved in the late stages of exocytosis, and is localized at the tip of the bud, the major site of exocytosis in yeast. Exo70 interacts with the Rho3 GTPase. This interaction mediates one of the three known functions of Rho3 in cell polarity: vesicle docking and fusion with the plasma membrane (the other two functions are regulation of actin polarity and transport of exocytic vesicles from the mother cell to the bud). In humans, the functions of Exo70 and the exocyst complex are less well characterized: Exo70 is expressed in several tissues and is thought to also be involved in exocytosis. Length = 356 Score = 27.3 bits (61), Expect = 5.6 Identities = 19/83 (22%), Positives = 28/83 (33%), Gaps = 9/83 (10%) Query: 137 SYTNNYVILRTAWVYSIFGSNFLLSMLRLAKERREISVVCDQFGTPTSAL--QIARAIIQ 194 Y NY LR Y + +L+ + + S L IA I Sbjct: 134 RYVMNY--LRLLAEYKD-TLSQILASIGDGDWLSSSPPESSSTESSESLLSSYIADIIDA 190 Query: 195 IAHNLIENS----DTSLRGIFHM 213 + NL S D +L G+F + Sbjct: 191 LLSNLEAKSKAYKDPALSGLFLL 213 >gnl|CDD|29931 cd01660, ba3-like_Oxidase_I, ba3-like heme-copper oxidase subunit I. The ba3 family of heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and some archaea which catalyze the reduction of O2 and simultaneously pump protons across the membrane. It has been proposed that Archaea acquired heme-copper oxidases through gene transfer from Gram-positive bacteria. The ba3 family contains oxidases that lack the conserved residues that form the D- and K-pathways in CcO and ubiquinol oxidase. Instead they contain a potential alternative K-pathway. Additional proton channels have been proposed for this family of oxidases but none have been identified definitively. For general information on the heme-copper oxidase superfamily, please see cd00919.. Length = 473 Score = 26.7 bits (59), Expect = 6.9 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 4/35 (11%) Query: 136 ASYTNNYVILRTAWV----YSIFGSNFLLSMLRLA 166 ASY NYV+ TAWV + G L+ + +A Sbjct: 347 ASYQLNYVVHNTAWVPGHFHLTVGGAVALTFMAVA 381 >gnl|CDD|144713 pfam01220, DHquinase_II, Dehydroquinase class II. Length = 140 Score = 27.0 bits (61), Expect = 7.1 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 17/44 (38%) Query: 53 VIINPAAYTAVDKAEDEPEIAFSINAEGAGAIAKAADSIGIPCI 96 +IINPAAYT S+ A+ A ++GIP I Sbjct: 70 IIINPAAYT-----------HTSV------ALRDALAAVGIPVI 96 >gnl|CDD|33593 COG3799, Mal, Methylaspartate ammonia-lyase [Amino acid transport and metabolism]. Length = 410 Score = 26.9 bits (59), Expect = 7.3 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 2/44 (4%) Query: 145 LRTAWVYSIFGSNFLLSMLRLAKERREISVVCDQFGTPTSALQI 188 L TA Y + S LL LA + VVCD++ P + Sbjct: 125 LHTAVRYGV--SQALLDAAALATGTTKTEVVCDEWQLPRVTESV 166 >gnl|CDD|29428 cd01096, Alkanal_monooxygenase, Alkanal monooxygenase are flavin monoxygenases. Molecular oxygen is activated by reaction with reduced flavin mononucleotide (FMNH2) and reacts with an aldehyde to yield the carboxylic acid, oxidized flavin (FMN) and a blue-green light. Bacterial luciferases are heterodimers made of alpha and beta subunits which are homologous. The single activer center is on the alpha subunit. The alpha subunit has a stretch of 30 amino acid residues that is not present in the beta subunit. The beta subunit does not contain the active site and is required for the formation of the fully active heterodimer. The beta subunit does not contribute anything directly to the active site. Its role is probably to stabilize the high quantum yield conformation of the alpha subunit through interactionbs across the subunit interface.. Length = 315 Score = 26.8 bits (59), Expect = 7.7 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 9/54 (16%) Query: 44 SFFLSFSPDVIINPAAYTAVDKAEDEPEIAFSINAEGAGAIAKAADSIGIPCIY 97 + F +F P + +NP AY+ + + AE A + AA G+P + Sbjct: 148 NDFYNF-PKISVNPHAYS-------KGGPPQYVTAESAETVEWAAKK-GLPLVL 192 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.320 0.136 0.406 Gapped Lambda K H 0.267 0.0772 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 3,552,289 Number of extensions: 187374 Number of successful extensions: 505 Number of sequences better than 10.0: 1 Number of HSP's gapped: 490 Number of HSP's successfully gapped: 29 Length of query: 290 Length of database: 6,263,737 Length adjustment: 93 Effective length of query: 197 Effective length of database: 4,254,100 Effective search space: 838057700 Effective search space used: 838057700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 57 (25.7 bits)