RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780921|ref|YP_003065334.1| dTDP-4-dehydrorhamnose
reductase [Candidatus Liberibacter asiaticus str. psy62]
(290 letters)
>gnl|CDD|113104 pfam04321, RmlD_sub_bind, RmlD substrate binding domain.
L-rhamnose is a saccharide required for the virulence of
some bacteria. Its precursor, dTDP-L-rhamnose, is
synthesized by four different enzymes the final one of
which is RmlD. The RmlD substrate binding domain is
responsible for binding a sugar nucleotide.
Length = 284
Score = 328 bits (842), Expect = 2e-90
Identities = 131/285 (45%), Positives = 179/285 (62%), Gaps = 7/285 (2%)
Query: 4 LVIGNNGQIAQSL-SSMCVQDVEIIRVGRPDIDLLKPKDFASFFLSFSPDVIINPAAYTA 62
LV G NGQ+ + L + + VE++ + RP++DL P+ A+ PDV++N AAYTA
Sbjct: 2 LVTGANGQLGRELTRLLAERGVEVVALDRPELDLTDPEAVAALVREARPDVVVNAAAYTA 61
Query: 63 VDKAEDEPEIAFSINAEGAGAIAKAADSIGIPCIYISTDYVFDGLSRTPIDEFSPTNPLN 122
VDKAE EPE+A+++NA G G +A+A + G P I+ISTDYVFDG P E PT PLN
Sbjct: 62 VDKAESEPELAYAVNALGPGNLAEACAARGAPLIHISTDYVFDGAKGGPYREDDPTGPLN 121
Query: 123 IYGKSKLAGEEKVASYTNNYVILRTAWVYSIFGSNFLLSMLRLAKERREISVVCDQFGTP 182
+YG++KLAGE+ V + ++ILRTAWVY +G+NF+ +MLRLA ER E+ VV DQ G+P
Sbjct: 122 VYGRTKLAGEQAVLAANPRHLILRTAWVYGEYGNNFVKTMLRLAAERDELRVVDDQLGSP 181
Query: 183 TSALQIARAIIQIAHNLIENSDTSLRGIFHMTADGGPVSWADFAEYIFWESAERGGPYSK 242
TSA +A A++ + + L G +H+ G SW DFA IF E+ GG +
Sbjct: 182 TSARDLADALLALIRKRLRGPA--LAGTYHLAGSGE-TSWYDFARAIFDEAGADGG---R 235
Query: 243 VYRIFTKQYPTKAHRPAYSCLDCSKLANTHNIRISTWKEGVRNIL 287
V I T +YPT A RPA S LD SKL T I + W+E + +L
Sbjct: 236 VRPIPTAEYPTPARRPANSVLDTSKLEATFGIPLPDWREALAEVL 280
>gnl|CDD|31288 COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [Cell envelope
biogenesis, outer membrane].
Length = 281
Score = 283 bits (725), Expect = 4e-77
Identities = 123/288 (42%), Positives = 171/288 (59%), Gaps = 12/288 (4%)
Query: 1 MKCLVIGNNGQIAQSLSSMCVQDVEIIRVGRPDIDLLKPKDFASFFLSFSPDVIINPAAY 60
MK L+ G NGQ+ L + E+I R ++D+ P PDV+IN AAY
Sbjct: 1 MKILITGANGQLGTELRRALPGEFEVIATDRAELDITDPDAVLEVIRETRPDVVINAAAY 60
Query: 61 TAVDKAEDEPEIAFSINAEGAGAIAKAADSIGIPCIYISTDYVFDGLSRTPIDEFSPTNP 120
TAVDKAE EPE+AF++NA GA +A+AA +G ++ISTDYVFDG P E NP
Sbjct: 61 TAVDKAESEPELAFAVNATGAENLARAAAEVGARLVHISTDYVFDGEKGGPYKETDTPNP 120
Query: 121 LNIYGKSKLAGEEKVASYTNNYVILRTAWVYSIFGSNFLLSMLRLAKERREISVVCDQFG 180
LN+YG+SKLAGEE V + ++ILRT+WVY +G+NF+ +MLRLAKE +E+ VV DQ+G
Sbjct: 121 LNVYGRSKLAGEEAVRAAGPRHLILRTSWVYGEYGNNFVKTMLRLAKEGKELKVVDDQYG 180
Query: 181 TPTSALQIARAIIQIAHNLIENSDTSLRGIFHMTADGGPVSWADFAEYIFWESAERGGPY 240
+PT +A AI+++ E G++H+ G SW +FA+ IF E G
Sbjct: 181 SPTYTEDLADAILELLEKEKEG------GVYHLVNS-GECSWYEFAKAIF----EEAGVD 229
Query: 241 SKVYR-IFTKQYPTKAHRPAYSCLDCSKLANTHNIRISTWKEGVRNIL 287
+V I + +YPT A RPA S LD KL + + W+E ++ +L
Sbjct: 230 GEVIEPIASAEYPTPAKRPANSSLDTKKLEKAFGLSLPEWREALKALL 277
>gnl|CDD|144821 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family.
This family of proteins utilize NAD as a cofactor. The
proteins in this family use nucleotide-sugar substrates
for a variety of chemical reactions.
Length = 235
Score = 83.9 bits (208), Expect = 5e-17
Identities = 51/200 (25%), Positives = 83/200 (41%), Gaps = 27/200 (13%)
Query: 4 LVIGNNGQIAQSLSSMCVQ-DVEIIRVGRPD----------------IDLLKPKDFASFF 46
LV G G I +L +Q E+I +GR DL P
Sbjct: 2 LVTGGTGFIGSALVRRLLQEGYEVIVLGRRRRSESLNTGRIRFRFHEGDLTDPDALERLL 61
Query: 47 LSFSPDVIINPAAYTAVDKAEDEPEIAFSINAEGAGAIAKAADSIGIP-CIYISTDYVFD 105
PD +I+ AA + V + ++P N G + +AA G+ ++ S+ V+
Sbjct: 62 AEVQPDAVIHLAAQSGVGASFEDPAEFIRANVLGTLNLLEAARRAGVKRFVFASSSEVYG 121
Query: 106 GLSRTPIDEFSPTNPLNIYGKSKLAGEEKVASYTN----NYVILRTAWVYS-----IFGS 156
++ PI E +P PL+ Y +KLAGE V +Y VILR VY F +
Sbjct: 122 DVADPPITEDTPLGPLSPYAAAKLAGERLVLAYARAYGLRAVILRLFNVYGPGDNDTFVT 181
Query: 157 NFLLSMLRLAKERREISVVC 176
+ + +++R E + ++
Sbjct: 182 HVIPALIRRILEGKPEILLL 201
>gnl|CDD|30800 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell
envelope biogenesis, outer membrane / Carbohydrate
transport and metabolism].
Length = 314
Score = 77.7 bits (190), Expect = 4e-15
Identities = 77/319 (24%), Positives = 118/319 (36%), Gaps = 46/319 (14%)
Query: 1 MKCLVIGNNGQIAQSLSSMCVQ---DVEIIRVGRPDIDLLKPK-----------DFASFF 46
M+ LV G G I L + DV + R +D L D
Sbjct: 1 MRILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLLSGVEFVVLDLTDRDLVDEL 60
Query: 47 LSFSPDVIINPAAYTAV-DKAEDEPEIAFSINAEGAGAIAKAADSIGIP-CIYISTDYVF 104
PD +I+ AA ++V D +P +N +G + +AA + G+ ++ S+ V
Sbjct: 61 AKGVPDAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASSVSVV 120
Query: 105 DG-LSRTPIDE-FSPTNPLNIYGKSKLAGEEKVASYTN----NYVILRTAWVY------- 151
G PIDE P PLN YG SKLA E+ + +Y VILR VY
Sbjct: 121 YGDPPPLPIDEDLGPPRPLNPYGVSKLAAEQLLRAYARLYGLPVVILRPFNVYGPGDKPD 180
Query: 152 --SIFGSNFLLSMLRLAKERREISVVCDQFGTPTSALQIARAIIQIAHNLIENSDTSLRG 209
S S F+ +L+ + I Q +A A++ N G
Sbjct: 181 LSSGVVSAFIRQLLK-GEPIIVIGGDGSQTRDFVYVDDVADALLLALEN-------PDGG 232
Query: 210 IFHMTADGGPVSWADFAEYIFWESAERGGPYSKVYRIFTKQYPTKAHRPAYSCLDCSKLA 269
+F++ + ++ + AE + AE G SK I + LD SK
Sbjct: 233 VFNIGSGTAEITVRELAEAV----AEAVG--SKAPLIVYIPLGRRGDLREGKLLDISKAR 286
Query: 270 NTHNIR-ISTWKEGVRNIL 287
+ +EG+ + L
Sbjct: 287 AALGWEPKVSLEEGLADTL 305
>gnl|CDD|36643 KOG1430, KOG1430, KOG1430, C-3 sterol
dehydrogenase/3-beta-hydroxysteroid dehydrogenase and
related dehydrogenases [Lipid transport and metabolism,
Amino acid transport and metabolism].
Length = 361
Score = 63.4 bits (154), Expect = 7e-11
Identities = 54/260 (20%), Positives = 92/260 (35%), Gaps = 39/260 (15%)
Query: 2 KCLVIGNNGQIAQSLSSMCVQDVEIIRVGRPDIDLLKPKDFASFFLSFSPDV-------- 53
LV G +G + Q L +++ + + D + A S V
Sbjct: 6 SVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGFRSGRVTVILGDLL 65
Query: 54 -------------IINPAAYTAVDKAEDEPEIAFSINAEGAGAIAKAADSIGIPC-IYIS 99
+++ AA D E++ ++A +N G + +A +G+ IY S
Sbjct: 66 DANSISNAFQGAVVVHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVKRLIYTS 125
Query: 100 TDYVFDGLSRTPI-DEFSPT--NPLNIYGKSKLAGEEKV----ASYTNNYVILRTAWVYS 152
+ YV G DE P ++ YG+SK E+ V S LR +Y
Sbjct: 126 SAYVVFGGEPIINGDESLPYPLKHIDPYGESKALAEKLVLEANGSDDLYTCALRPPGIYG 185
Query: 153 IFGSNFLLSMLRLAKERREISVVCD-----QFGTPTSALQIARAIIQIAHNLIENSDTSL 207
L ++ K + + D F T +A A I A L++ S + +
Sbjct: 186 PGDKRLLPKIVEALKNGGFLFKIGDGENLNDF---TYGENVAWAHILAARALLDKSPS-V 241
Query: 208 RGIFHMTADGGPV-SWADFA 226
G F+ D PV + +
Sbjct: 242 NGQFYFITDDTPVRFFDFLS 261
>gnl|CDD|31284 COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis,
outer membrane].
Length = 329
Score = 58.3 bits (141), Expect = 2e-09
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 35 DLLKPKDFASFFLSFSPDVIINPAAYTAVDKAEDEPEIAFSINAEGAGAIAKAADSIGI- 93
DLL + F D +++ AA +V ++ P + N G + +A G+
Sbjct: 52 DLLDRALLTAVFEENKIDAVVHFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVK 111
Query: 94 PCIYISTDYVFDGLSRTPIDEFSPTNPLNIYGKSKLAGEEKVASYTN----NYVILR 146
I+ ST V+ + +PI E SP P+N YG+SKL EE + VILR
Sbjct: 112 KFIFSSTAAVYGEPTTSPISETSPLAPINPYGRSKLMSEEILRDAAKANPFKVVILR 168
>gnl|CDD|31283 COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases
[Cell envelope biogenesis, outer membrane / Carbohydrate
transport and metabolism].
Length = 588
Score = 53.0 bits (127), Expect = 1e-07
Identities = 28/111 (25%), Positives = 40/111 (36%), Gaps = 15/111 (13%)
Query: 46 FLSFSPDVIINPAAYTAVDKAEDEPEIAFSINAEGAGAIAKAADSIGIP-CIYISTDYVF 104
D++ + AA V E PE A N G +A+AA G+ + ISTD
Sbjct: 321 MEGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKA- 379
Query: 105 DGLSRTPIDEFSPTNPLNIYGKSKLAGEEKVASYTNNYVILRTAWVYSIFG 155
NP N+ G +K E+ + N T + FG
Sbjct: 380 -------------VNPTNVMGATKRLAEKLFQAANRNVSGTGTRFCVVRFG 417
>gnl|CDD|31285 COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope
biogenesis, outer membrane].
Length = 340
Score = 51.0 bits (122), Expect = 4e-07
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 4/112 (3%)
Query: 35 DLLKPKDFASFFLSFSPDVIINPAAYTAVDKAEDEPEIAFSINAEGAGAIAKAA--DSIG 92
D+ + F + PD +++ AA + VD++ D P N G + +AA
Sbjct: 59 DICDRELVDRLFKEYQPDAVVHFAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGK 118
Query: 93 IPCIYISTDYVFDGLSRT--PIDEFSPTNPLNIYGKSKLAGEEKVASYTNNY 142
+ISTD V+ L E +P NP + Y SK A + V +Y Y
Sbjct: 119 FRFHHISTDEVYGDLGLDDDAFTETTPYNPSSPYSASKAASDLLVRAYVRTY 170
>gnl|CDD|35966 KOG0747, KOG0747, KOG0747, Putative NAD+-dependent epimerases
[Carbohydrate transport and metabolism].
Length = 331
Score = 48.8 bits (116), Expect = 2e-06
Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 9/132 (6%)
Query: 52 DVIINPAAYTAVDKAEDEPEIAFSINAEGAGAIAKAADSIG--IPCIYISTDYVF-DGLS 108
D +I+ AA T VD++ + N + +A G +++STD V+ D
Sbjct: 82 DTVIHFAAQTHVDRSFGDSFEFTKNNILSTHVLLEAVRVSGNIRRFVHVSTDEVYGDSDE 141
Query: 109 RTPIDEFSPTNPLNIYGKSKLAGEEKVASYTNNY----VILRTAWVY--SIFGSNFLLSM 162
+ E S NP N Y SK A E V SY +Y V R VY + + +
Sbjct: 142 DAVVGEASLLNPTNPYAASKAAAEMLVRSYGRSYGLPVVTTRMNNVYGPNQYPEKLIPKF 201
Query: 163 LRLAKERREISV 174
++LA +E +
Sbjct: 202 IKLAMRGKEYPI 213
>gnl|CDD|36585 KOG1371, KOG1371, KOG1371, UDP-glucose
4-epimerase/UDP-sulfoquinovose synthase [Cell
wall/membrane/envelope biogenesis].
Length = 343
Score = 47.9 bits (114), Expect = 3e-06
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 6/118 (5%)
Query: 35 DLLKPKDFASFFLSFSPDVIINPAAYTAVDKAEDEPEIAFSINAEGAGAIAKAADSIGIP 94
DL + F D +++ AA AV ++ + P + N G + + + +
Sbjct: 62 DLNDAEALEKLFSEVKFDAVMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHNVK 121
Query: 95 -CIYISTDYVFDGLSRTPIDEFSPT-NPLNIYGKSKLAGEEKVASYTNNY----VILR 146
++ S+ V+ ++ PI E PT P N YGK+K A EE + Y Y LR
Sbjct: 122 ALVFSSSATVYGLPTKVPITEEDPTDQPTNPYGKTKKAIEEIIHDYNKAYGWKVTGLR 179
>gnl|CDD|145720 pfam02719, Polysacc_synt_2, Polysaccharide biosynthesis protein.
This is a family of diverse bacterial polysaccharide
biosynthesis proteins including the CapD protein, WalL
protein mannosyl-transferase and several putative
epimerases (e.g. WbiI).
Length = 280
Score = 43.2 bits (103), Expect = 8e-05
Identities = 25/97 (25%), Positives = 35/97 (36%), Gaps = 16/97 (16%)
Query: 48 SFSPDVIINPAAYTAVDKAEDEPEIAFSINAEGAGAIAKAADSIGIPC-IYISTDYVFDG 106
+ D + + AA V E P A N G +A+AA G+ + ISTD
Sbjct: 71 EYGVDTVFHAAALKHVPLVEYNPMEAIKTNVLGTENVAEAAIENGVEKFVLISTDKA--- 127
Query: 107 LSRTPIDEFSPTNPLNIYGKSKLAGEEKVASYTNNYV 143
NP N+ G +K EK+ N
Sbjct: 128 -----------VNPTNVMGATKRLA-EKLFQAANRES 152
>gnl|CDD|31286 COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis,
outer membrane].
Length = 345
Score = 38.7 bits (90), Expect = 0.002
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
Query: 51 PDVIINPAAYTAVDKAEDEPEIAFSINAEGAGAIAKAADSIGIPCIYI---STDYVFDGL 107
PD I N AA + V + ++PE ++A G + +A +G ST ++ +
Sbjct: 79 PDEIYNLAAQSHVGVSFEQPEYTADVDAIGTLRLLEAIRILGEKKTRFYQASTSELYGLV 138
Query: 108 SRTPIDEFSPTNPLNIYGKSKLAGEEKVASYTNNY 142
P E +P P + Y +KL +Y +Y
Sbjct: 139 QEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESY 173
>gnl|CDD|73326 cd02759, MopB_Acetylene-hydratase, The MopB_Acetylene-hydratase CD
contains acetylene hydratase (Ahy) and other related
proteins. The acetylene hydratase of Pelobacter
acetylenicus is a tungsten iron-sulfur protein involved
in the fermentation of acetylene to ethanol and acetate.
Members of this CD belong to the molybdopterin_binding
(MopB) superfamily of proteins..
Length = 477
Score = 32.2 bits (73), Expect = 0.17
Identities = 27/120 (22%), Positives = 44/120 (36%), Gaps = 17/120 (14%)
Query: 153 IFGSNFLLSMLRLAKERR-----EISVVCDQFGTPTSALQIARAIIQIAHNLIENSDTS- 206
+FG+N L S A + VV D F TPT+ L A ++ +A +L
Sbjct: 335 VFGTNPLASYADTAPVLEALKALDFIVVVDLFMTPTAML--ADIVLPVAMSLERPGLRGG 392
Query: 207 ------LRGIFHMTADGGPVSWADFAEYIFWESAERGGPYSKVYRIFTKQYPTKAHRPAY 260
++ G + +D+ I E +R GP Y + K +P +
Sbjct: 393 FEAENFVQLRQKAVEPYGE-AKSDY--EIVLELGKRLGPEEAEYYKYEKGLLRPDGQPGF 449
>gnl|CDD|48433 cd00727, malate_synt_A, Malate synthase A (MSA), present in some
bacteria, plants and fungi. Prokaryotic MSAs tend to be
monomeric, whereas eukaryotic enzymes are homomultimers.
In general, malate synthase catalyzes the Claisen
condensation of glyoxylate and acetyl-CoA to malyl-CoA,
which hydrolyzes to malate and CoA. This reaction is
part of the glyoxylate cycle, which allows certain
organisms, like plants and fungi, to derive their carbon
requirements from two-carbon compounds, by bypassing the
two carboxylation steps of the citric acid cycle..
Length = 511
Score = 28.3 bits (63), Expect = 2.6
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 212 HMTADGGPVSWA--DFAEYIFW---ESAERG-GPY 240
H+ DG PVS + DF Y F RG GPY
Sbjct: 153 HVLVDGEPVSGSLFDFGLYFFHNAKALLARGSGPY 187
>gnl|CDD|37219 KOG2008, KOG2008, KOG2008, BTK-associated SH3-domain binding
protein SAB [Signal transduction mechanisms].
Length = 426
Score = 28.2 bits (62), Expect = 2.7
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 169 RREISVVCDQFGTPTSALQIARAIIQIAHNLIENSD 204
R E F T L+ A+ + +A + D
Sbjct: 82 RLEAQKAAQDFERATEVLRAAKEQVSLAEQSLLEDD 117
>gnl|CDD|32700 COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid
transport and metabolism].
Length = 426
Score = 27.9 bits (62), Expect = 3.7
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 74 FSINAEGAGAIAKAADSIGIPCIYISTDYVFDGLSRTPIDEFSPTNPLNIYGK----SKL 129
F A AG + +P IY +T YVFD + F P NIY + +
Sbjct: 8 FETLAVHAGQEDPTTGARAVP-IYQTTSYVFDD-TDHAAALFGLKEPGNIYTRIMNPTTD 65
Query: 130 AGEEKVAS 137
EE++A+
Sbjct: 66 VLEERIAA 73
>gnl|CDD|144973 pfam01578, Cytochrom_C_asm, Cytochrome C assembly protein. This
family consists of various proteins involved in
cytochrome c assembly from mitochondria and bacteria;
CycK from Rhizobium, CcmC from E. coli and Paracoccus
denitrificans and orf240 from wheat mitochondria. The
members of this family are probably integral membrane
proteins with six predicted transmembrane helices. It
has been proposed that members of this family comprise a
membrane component of an ABC (ATP binding cassette)
transporter complex. It is also proposed that this
transporter is necessary for transport of some component
needed for cytochrome c assembly. One member CycK
contains a putative heme-binding motif, orf240 also
contains a putative heme-binding motif and is a proposed
ABC transporter with c-type heme as its proposed
substrate. However it seems unlikely that all members of
this family transport heme nor c-type apocytochromes
because CcmC in the putative CcmABC transporter
transports neither.
Length = 211
Score = 27.3 bits (61), Expect = 4.4
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 151 YSIFGSNFLLSMLRLAKERREISVVCDQFGTPTSALQ-IARAIIQIA 196
Y+ LLS+ L +R + + P L ++ II I
Sbjct: 83 YATLIIAALLSIALLLIDRAKKKLKNSNNLPPLKTLDRLSYRIILIG 129
>gnl|CDD|30965 COG0620, MetE, Methionine synthase II (cobalamin-independent)
[Amino acid transport and metabolism].
Length = 330
Score = 27.2 bits (60), Expect = 4.9
Identities = 20/88 (22%), Positives = 28/88 (31%), Gaps = 15/88 (17%)
Query: 23 DVEIIRVGRPDIDLLKPKDFASFFLSFSPDVIINPAAYTA-VDKAEDEPEIAFSINAEGA 81
DV I R ++LL+ D I K E EIA
Sbjct: 237 DVIDIETSRSRMELLEV------LEEVKYDKEIGLGVVDIHSPKVESVEEIA-------- 282
Query: 82 GAIAKAADSIGIPCIYISTDYVFDGLSR 109
I KA + + +Y++ D L R
Sbjct: 283 ARIRKALERVPPERLYVNPDCGLKTLPR 310
>gnl|CDD|34926 COG5351, COG5351, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 367
Score = 27.3 bits (60), Expect = 5.3
Identities = 14/49 (28%), Positives = 19/49 (38%)
Query: 206 SLRGIFHMTADGGPVSWADFAEYIFWESAERGGPYSKVYRIFTKQYPTK 254
S++G F DGG + A E + E A G P + P K
Sbjct: 28 SVKGTFDHPQDGGTMEIAREQESLQMEDAYEGDPGQSALLRESDFTPDK 76
>gnl|CDD|145956 pfam03081, Exo70, Exo70 exocyst complex subunit. The Exo70 protein
forms one subunit of the exocyst complex. First
discovered in S. cerevisiae, Exo70 and other exocyst
proteins have been observed in several other eukaryotes,
including humans. In S. cerevisiae, the exocyst complex
is involved in the late stages of exocytosis, and is
localized at the tip of the bud, the major site of
exocytosis in yeast. Exo70 interacts with the Rho3
GTPase. This interaction mediates one of the three known
functions of Rho3 in cell polarity: vesicle docking and
fusion with the plasma membrane (the other two functions
are regulation of actin polarity and transport of
exocytic vesicles from the mother cell to the bud). In
humans, the functions of Exo70 and the exocyst complex
are less well characterized: Exo70 is expressed in
several tissues and is thought to also be involved in
exocytosis.
Length = 356
Score = 27.3 bits (61), Expect = 5.6
Identities = 19/83 (22%), Positives = 28/83 (33%), Gaps = 9/83 (10%)
Query: 137 SYTNNYVILRTAWVYSIFGSNFLLSMLRLAKERREISVVCDQFGTPTSAL--QIARAIIQ 194
Y NY LR Y + +L+ + + S L IA I
Sbjct: 134 RYVMNY--LRLLAEYKD-TLSQILASIGDGDWLSSSPPESSSTESSESLLSSYIADIIDA 190
Query: 195 IAHNLIENS----DTSLRGIFHM 213
+ NL S D +L G+F +
Sbjct: 191 LLSNLEAKSKAYKDPALSGLFLL 213
>gnl|CDD|29931 cd01660, ba3-like_Oxidase_I, ba3-like heme-copper oxidase subunit
I. The ba3 family of heme-copper oxidases are
transmembrane protein complexes in the respiratory
chains of prokaryotes and some archaea which catalyze
the reduction of O2 and simultaneously pump protons
across the membrane. It has been proposed that Archaea
acquired heme-copper oxidases through gene transfer from
Gram-positive bacteria. The ba3 family contains
oxidases that lack the conserved residues that form the
D- and K-pathways in CcO and ubiquinol oxidase. Instead
they contain a potential alternative K-pathway.
Additional proton channels have been proposed for this
family of oxidases but none have been identified
definitively. For general information on the
heme-copper oxidase superfamily, please see cd00919..
Length = 473
Score = 26.7 bits (59), Expect = 6.9
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Query: 136 ASYTNNYVILRTAWV----YSIFGSNFLLSMLRLA 166
ASY NYV+ TAWV + G L+ + +A
Sbjct: 347 ASYQLNYVVHNTAWVPGHFHLTVGGAVALTFMAVA 381
>gnl|CDD|144713 pfam01220, DHquinase_II, Dehydroquinase class II.
Length = 140
Score = 27.0 bits (61), Expect = 7.1
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 17/44 (38%)
Query: 53 VIINPAAYTAVDKAEDEPEIAFSINAEGAGAIAKAADSIGIPCI 96
+IINPAAYT S+ A+ A ++GIP I
Sbjct: 70 IIINPAAYT-----------HTSV------ALRDALAAVGIPVI 96
>gnl|CDD|33593 COG3799, Mal, Methylaspartate ammonia-lyase [Amino acid transport
and metabolism].
Length = 410
Score = 26.9 bits (59), Expect = 7.3
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 145 LRTAWVYSIFGSNFLLSMLRLAKERREISVVCDQFGTPTSALQI 188
L TA Y + S LL LA + VVCD++ P +
Sbjct: 125 LHTAVRYGV--SQALLDAAALATGTTKTEVVCDEWQLPRVTESV 166
>gnl|CDD|29428 cd01096, Alkanal_monooxygenase, Alkanal monooxygenase are flavin
monoxygenases. Molecular oxygen is activated by reaction
with reduced flavin mononucleotide (FMNH2) and reacts
with an aldehyde to yield the carboxylic acid, oxidized
flavin (FMN) and a blue-green light. Bacterial
luciferases are heterodimers made of alpha and beta
subunits which are homologous. The single activer center
is on the alpha subunit. The alpha subunit has a stretch
of 30 amino acid residues that is not present in the
beta subunit. The beta subunit does not contain the
active site and is required for the formation of the
fully active heterodimer. The beta subunit does not
contribute anything directly to the active site. Its
role is probably to stabilize the high quantum yield
conformation of the alpha subunit through interactionbs
across the subunit interface..
Length = 315
Score = 26.8 bits (59), Expect = 7.7
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 9/54 (16%)
Query: 44 SFFLSFSPDVIINPAAYTAVDKAEDEPEIAFSINAEGAGAIAKAADSIGIPCIY 97
+ F +F P + +NP AY+ + + AE A + AA G+P +
Sbjct: 148 NDFYNF-PKISVNPHAYS-------KGGPPQYVTAESAETVEWAAKK-GLPLVL 192
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.320 0.136 0.406
Gapped
Lambda K H
0.267 0.0772 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,552,289
Number of extensions: 187374
Number of successful extensions: 505
Number of sequences better than 10.0: 1
Number of HSP's gapped: 490
Number of HSP's successfully gapped: 29
Length of query: 290
Length of database: 6,263,737
Length adjustment: 93
Effective length of query: 197
Effective length of database: 4,254,100
Effective search space: 838057700
Effective search space used: 838057700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.7 bits)