HHsearch alignment for GI: 254780922 and conserved domain: COG1211
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism].
Probab=99.37 E-value=1.2e-12 Score=99.50 Aligned_cols=212 Identities=20% Similarity=0.305 Sum_probs=124.8
Q ss_pred EEEEECCCCCCCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHCC-CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 07992488874553344389822224783747999999999789-86899997776564311122222222111122233
Q gi|254780922|r 2 KGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAG-IREILIISTPRDLPVLKEFLGSGEKWGVQFSYIEQ 80 (292)
Q Consensus 2 kaiIlAaG~GtRl~P~T~~~pK~Llpi~gkplI~~~l~~l~~~G-i~~I~ii~~~~~~~~~~~~l~~g~~~g~~i~y~~q 80 (292)
T Consensus 6 ~~vilAaG~G~R~~~---~~pKq~l~l~g~pll~~tl~~f~~~~~i~~ivvv~~~~~~~~~~~~~~--~~~~~~v~~v~G 80 (230)
T COG1211 6 SAVILAAGFGSRMGN---PVPKQYLELGGRPLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPK--LSADKRVEVVKG 80 (230)
T ss_pred EEEEECCCCCCCCCC---CCCCEEEEECCEEEHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHH--HCCCCEEEEECC
T ss_conf 999975763433579---998458899998856999999974767676999978466489998632--124870799348
Q ss_pred CCCCCCCCCCCCCCCCCC--CCCCCEEECCC-CCCCC-CCCCHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 332244685210111233--56752132144-32111-100001110000011100122221000122212222100010
Q gi|254780922|r 81 LVPAGLAQSYILGAEFIG--DSSSVLILGDN-VFYGS-DISDIFHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAIS 156 (292)
Q Consensus 81 ~~p~Gta~Ai~~a~~~i~--~~~~~lilgDn-i~~~~-~l~~~l~~~~~~~~~~ti~~~~v~~p~~yGvv~~d~~~~i~~ 156 (292)
T Consensus 81 G~~--R~~SV~~gL~~~~~~~~~~VlvHDaaRPf~~~~~i~~li~--~~~~~~aai~alpv~DTik~----~~~~~~i~~ 152 (230)
T COG1211 81 GAT--RQESVYNGLQALSKYDSDWVLVHDAARPFLTPKLIKRLIE--LADKYGAAILALPVTDTLKR----VDADGNIVE 152 (230)
T ss_pred CCC--HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHH--HHCCCCCEEEEEECCCCEEE----ECCCCCEEE
T ss_conf 751--7999999999721158988999646667899999999998--62238817997504673788----658987234
Q ss_pred CCCCCCCCCCCCCHHHHH-HHHHHHHHHH--HH-CC-CCCCCCCCCCCCCCHHCCCCCEEEEECCCCEEEECCCCHHHHH
Q ss_conf 013333322222202455-4100022432--20-04-6753333333432000001320463135412563278457799
Q gi|254780922|r 157 IEEKPNNPKSSFAVTGIY-FYDQEVVNIA--RN-IR-PSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLL 231 (292)
Q Consensus 157 i~EKP~~~~sn~a~~GiY-~f~~~i~~~~--~~-l~-~s~rgE~eitD~~~~~l~~~~~~~~~~~~g~~W~D~Gt~e~l~ 231 (292)
T Consensus 153 t~~-----R-----~~l~~~QTPQ~F~~~~L~~a~~~a~~~~-~~~tDdas~~e~~G~~v~lV~G~~-~n~KiTtpeDL~ 220 (230)
T COG1211 153 TVD-----R-----SGLWAAQTPQAFRLELLKQALARAFAEG-REITDDASAIEKAGGPVSLVEGSA-DNFKITTPEDLE 220 (230)
T ss_pred CCC-----H-----HHHHHHHCCCCCCHHHHHHHHHHHHHCC-CCCCCHHHHHHHCCCCEEEEECCC-CEEEECCHHHHH
T ss_conf 437-----5-----5423433876331999999999998628-776886999987699819982683-305762888999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780922|r 232 DTAVFVR 238 (292)
Q Consensus 232 ~As~~i~ 238 (292)
T Consensus 221 ~a~~il~ 227 (230)
T COG1211 221 IAEAILR 227 (230)
T ss_pred HHHHHHC
T ss_conf 9998752