HHsearch alignment for GI: 254780922 and conserved domain: COG4750
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane].
Probab=99.87 E-value=6.3e-24 Score=170.28 Aligned_cols=170 Identities=22% Similarity=0.398 Sum_probs=120.5
Q ss_pred CEEEEECCCCCCCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 90799248887455334438982222478374799999999978986899997776564311122222222111122233
Q gi|254780922|r 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLKEFLGSGEKWGVQFSYIEQ 80 (292)
Q Consensus 1 MkaiIlAaG~GtRl~P~T~~~pK~Llpi~gkplI~~~l~~l~~~Gi~~I~ii~~~~~~~~~~~~l~~g~~~g~~i~y~~q 80 (292)
T Consensus 1 ~nAIIlAAG~gsR~~plT~~tpK~LlkV~g~plIErqI~~L~e~gI~dI~IVvGYlk-E~FeY-Lk--dKy~vtLvyN~k 76 (231)
T COG4750 1 MNAIILAAGLGSRFVPLTQSTPKSLLKVNGEPLIERQIEQLREAGIDDITIVVGYLK-EQFEY-LK--DKYDVTLVYNPK 76 (231)
T ss_pred CCEEEEECCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEEEEHH-HHHHH-HH--HHCCEEEEECCH
T ss_conf 961899425566533131028767887358550999999999779861899963148-99999-98--715749995740
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCHHHHHCCCCCCCC-CCCCCCCCCCCCCCHHHCCC
Q ss_conf 33224468521011123356752132144321111000011100000111001222210-00122212222100010013
Q gi|254780922|r 81 LVPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIFHKARARRNSATVVGCHVQN-PQRYGVVEVDSSNQAISIEE 159 (292)
Q Consensus 81 ~~p~Gta~Ai~~a~~~i~~~~~~lilgDni~~~~~l~~~l~~~~~~~~~~ti~~~~v~~-p~~yGvv~~d~~~~i~~i~E 159 (292)
T Consensus 77 Y~~yNn~ySlyla~d~l~nt--YiidsDnyl~k-N---if~~~~~~S~---Yfav~~~~~tnEw-~l~~~~~~ki~~v~- 145 (231)
T COG4750 77 YREYNNIYSLYLARDFLNNT--YIIDSDNYLTK-N---IFLTKESHSK---YFAVYRSGKTNEW-LLIYNSDGKITRVD- 145 (231)
T ss_pred HHHHHHHHHHHHHHHHHCCC--EEECCCHHHHH-H---HHHCCCCCCE---EEEEEECCCCCEE-EEEECCCCCEEEEE-
T ss_conf 77663099999999985256--79505047666-5---5525735212---7899963877425-79976998489999-
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 3333222222024554100022432200
Q gi|254780922|r 160 KPNNPKSSFAVTGIYFYDQEVVNIARNI 187 (292)
Q Consensus 160 KP~~~~sn~a~~GiY~f~~~i~~~~~~l 187 (292)
T Consensus 146 --Igg~~~~imsG~sff~~~~~~ki~~l 171 (231)
T COG4750 146 --IGGLNGYIMSGISFFDAQFSNKIKKL 171 (231)
T ss_pred --ECCCCCCEEEEEEEECCHHHHHHHHH
T ss_conf --66855625751144234247999999