HHsearch alignment for GI: 254780922 and conserved domain: PRK00155
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed.
Probab=99.54 E-value=1.5e-14 Score=111.43 Aligned_cols=211 Identities=20% Similarity=0.280 Sum_probs=123.0
Q ss_pred EEEECCCCCCCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHCC-CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7992488874553344389822224783747999999999789-868999977765643111222222221111222333
Q gi|254780922|r 3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAG-IREILIISTPRDLPVLKEFLGSGEKWGVQFSYIEQL 81 (292)
Q Consensus 3 aiIlAaG~GtRl~P~T~~~pK~Llpi~gkplI~~~l~~l~~~G-i~~I~ii~~~~~~~~~~~~l~~g~~~g~~i~y~~q~ 81 (292)
T Consensus 7 aIIlAaG~G~R~g---~~~pKQf~~l~gkpil~~sl~~f~~~~~i~~IvvV~~~~~~~~~~~~~~~---~~~~i~~v~-- 78 (228)
T PRK00155 7 AIIPAAGIGSRMG---ADRPKQYLPLGGKPILEHTLEAFLAHPAIDEIIVVVPPDDTEYAKLLLAK---FDKRIKVVA-- 78 (228)
T ss_pred EEEECCCCCCCCC---CCCCCCCCEECCEEHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHH---CCCCEEEEC--
T ss_conf 9993772051378---67996556689569999999999759998979999576269999999874---498579976--
Q ss_pred CCCCC--CCCCCCCCCCCCCCCCCEEE-CCCCCCCCC-CCCHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHC
Q ss_conf 32244--68521011123356752132-144321111-000011100000111001222210001222122221000100
Q gi|254780922|r 82 VPAGL--AQSYILGAEFIGDSSSVLIL-GDNVFYGSD-ISDIFHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISI 157 (292)
Q Consensus 82 ~p~Gt--a~Ai~~a~~~i~~~~~~lil-gDni~~~~~-l~~~l~~~~~~~~~~ti~~~~v~~p~~yGvv~~d~~~~i~~i 157 (292)
T Consensus 79 --GG~tR~~Sv~ngL~~l~~~~~VlIHDaARP~is~~~i~~li~~~~--~~~~~ip~~p~~DT----ik~~~~~~~i~~t 150 (228)
T PRK00155 79 --GGAERQDSVLNGLQALPDDDWVLVHDAARPFLTPDDIDRLIEAAE--EYGAAILAVPVRDT----IKRVDAGGFIVDT 150 (228)
T ss_pred --CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHH--HCCCCEEEEECCCC----EEEECCCCCEEEE
T ss_conf --970399999999998403997999706676899999999999998--46984698760241----7896589815530
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHH--H-HCCCCCCCCCCCCCCCCHHCCCCCEEEEECCCCEEEECCCCHHHHHHHH
Q ss_conf 133333222222024554100022432--2-0046753333333432000001320463135412563278457799999
Q gi|254780922|r 158 EEKPNNPKSSFAVTGIYFYDQEVVNIA--R-NIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLLDTA 234 (292)
Q Consensus 158 ~EKP~~~~sn~a~~GiY~f~~~i~~~~--~-~l~~s~rgE~eitD~~~~~l~~~~~~~~~~~~g~~W~D~Gt~e~l~~As 234 (292)
T Consensus 151 l~-----R~~l~~----~QTPQ~F~~~~l~~a~~~~~~~~~~~TDd~sl~~~~g~~v~~v~G~~~-N~KIT~~eDL~~ae 220 (228)
T PRK00155 151 PD-----RSGLWA----AQTPQGFRVELLKEALARALAEGFTITDDASAVEWLGKPVRLVEGRYD-NIKVTTPEDLALAE 220 (228)
T ss_pred CC-----CHHEEE----EECCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCEEEEECCCC-CCCCCCHHHHHHHH
T ss_conf 35-----144366----528853259999999999987599877899999986997699966854-37728999999999
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780922|r 235 VFVRN 239 (292)
Q Consensus 235 ~~i~~ 239 (292)
T Consensus 221 ~ll~~ 225 (228)
T PRK00155 221 AILKR 225 (228)
T ss_pred HHHHH
T ss_conf 99985