HHsearch alignment for GI: 254780922 and conserved domain: PRK13385
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional.
Probab=99.42 E-value=2.4e-13 Score=103.97 Aligned_cols=217 Identities=17% Similarity=0.146 Sum_probs=115.3
Q ss_pred CE--EEEECCCCCCCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHCC-CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 90--7992488874553344389822224783747999999999789-86899997776564311122222222111122
Q gi|254780922|r 1 MK--GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAG-IREILIISTPRDLPVLKEFLGSGEKWGVQFSY 77 (292)
Q Consensus 1 Mk--aiIlAaG~GtRl~P~T~~~pK~Llpi~gkplI~~~l~~l~~~G-i~~I~ii~~~~~~~~~~~~l~~g~~~g~~i~y 77 (292)
T Consensus 1 M~~~~IilAaG~G~R~~---~~~pKQf~~l~gkpil~~sl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~~~~~~~~v~i 77 (238)
T PRK13385 1 MNYELIFLAAGQGKMGN---VPLPKQFLDIDNKPILIHTIEKFILVSEFNEIIIATPAQWISHTQDILKKYNITDQRVKV 77 (238)
T ss_pred CCEEEEEECCCCCCCCC---CCCCCCEEEECCEEHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 95699997773461488---689964327997889999999985587678799967788899999999861544476899
Q ss_pred CCCCCCCCCCCCCCCCCCCC------CCCCCCEEECC-CCCCCCC-CCCHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 23333224468521011123------35675213214-4321111-0000111000001110012222100012221222
Q gi|254780922|r 78 IEQLVPAGLAQSYILGAEFI------GDSSSVLILGD-NVFYGSD-ISDIFHKARARRNSATVVGCHVQNPQRYGVVEVD 149 (292)
Q Consensus 78 ~~q~~p~Gta~Ai~~a~~~i------~~~~~~lilgD-ni~~~~~-l~~~l~~~~~~~~~~ti~~~~v~~p~~yGvv~~d 149 (292)
T Consensus 78 v~GG~t--R~~SV~ngl~~l~~~~~~~~~~~VlIHDaARP~vs~~~i~~~i~~~~~~~~-~~~~~~~~~dt-----i~~~ 149 (238)
T PRK13385 78 VAGGTD--RNETIMNIIDHIRNVNGINNDDVIVTHDAVRPFLTQRIIKENIEVAVKYGA-VDTVIEAIDTI-----VMSK 149 (238)
T ss_pred ECCCCC--HHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCC-EEEEEEECCCE-----EEEE
T ss_conf 328986--489999999998741147876889995466778999999999999872197-37999613445-----9992
Q ss_pred CCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH--HH-CCC-CCCCCCCCCCCCCHHCCCCCEEEEECCCCEEEECCC
Q ss_conf 21000100133333222222024554100022432--20-046-753333333432000001320463135412563278
Q gi|254780922|r 150 SSNQAISIEEKPNNPKSSFAVTGIYFYDQEVVNIA--RN-IRP-SARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAG 225 (292)
Q Consensus 150 ~~~~i~~i~EKP~~~~sn~a~~GiY~f~~~i~~~~--~~-l~~-s~rgE~eitD~~~~~l~~~~~~~~~~~~g~~W~D~G 225 (292)
T Consensus 150 ~~~~i~~t~-----dR~~l~~----~QTPQ~F~~~~L~~a~~~~~~~~~~~~TDdasl~e~~g~~v~~v~G~~-~NiKIT 219 (238)
T PRK13385 150 DKQNIHSIP-----VRNEMYQ----GQTPQSFNIKLLQDSYRALSSEQKEILSDACKIIVESGHPVKLVRGEL-YNIKVT 219 (238)
T ss_pred CCCCEEECC-----CHHHHHH----HCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCEEEEECCC-CCCCCC
T ss_conf 699524126-----8788200----029961359999999999986289988889999987799669996696-347799
Q ss_pred CHHHHHHHHHHHH
Q ss_conf 4577999999999
Q gi|254780922|r 226 TPESLLDTAVFVR 238 (292)
Q Consensus 226 t~e~l~~As~~i~ 238 (292)
T Consensus 220 ~~eDL~~a~~ll~ 232 (238)
T PRK13385 220 TPYDLKVANAIIQ 232 (238)
T ss_pred CHHHHHHHHHHHC
T ss_conf 8999999999975