HHsearch alignment for GI: 254780922 and conserved domain: TIGR00466
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase; InterPro: IPR004528 3-Deoxy-D-manno-octulosonate cytidylyltransferase (2.7.7.38 from EC) activates KDO, a required 8-carbon sugar, for incorporation into bacterial lipopolysaccharide in Gram negative bacteria. It acts as a homodimer and catalyses the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate and pyrophosphate.; GO: 0008690 3-deoxy-manno-octulosonate cytidylyltransferase activity, 0009103 lipopolysaccharide biosynthetic process, 0005737 cytoplasm.
Probab=98.07 E-value=5.5e-06 Score=57.72 Aligned_cols=214 Identities=19% Similarity=0.238 Sum_probs=126.5
Q ss_pred EEEECCCCCCCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 79924888745533443898222247837479999999997898689999777656431112222222211112223333
Q gi|254780922|r 3 GIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLKEFLGSGEKWGVQFSYIEQLV 82 (292)
Q Consensus 3 aiIlAaG~GtRl~P~T~~~pK~Llpi~gkplI~~~l~~l~~~Gi~~I~ii~~~~~~~~~~~~l~~g~~~g~~i~y~~q~~ 82 (292)
T Consensus 5 vIIPAR~~SsRl~------~K~L~DI~G~PMi~~v~~~A~~s~~~~~ivA~D--~E~v~~-~---~~~~~~~~~~T~~~H 72 (246)
T TIGR00466 5 VIIPARLASSRLP------GKPLEDIKGKPMIVHVLEKANESGADRVIVATD--DESVAQ-T---VKKFGIEVCLTSKDH 72 (246)
T ss_pred EEECCCCCCCCCC------CCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECC--CHHHHH-H---HHHCCCEEEEECCCC
T ss_conf 9853653113589------872035578936889999975236356899748--726999-9---997297189851667
Q ss_pred CCCCCCCCCCCCC-CCCCCCCCE-EECCCCCCCCCCCC-HHHHHCCCHHHHHCCCCCCCC------CCCCCCCCCCCCCC
Q ss_conf 2244685210111-233567521-32144321111000-011100000111001222210------00122212222100
Q gi|254780922|r 83 PAGLAQSYILGAE-FIGDSSSVL-ILGDNVFYGSDISD-IFHKARARRNSATVVGCHVQN------PQRYGVVEVDSSNQ 153 (292)
Q Consensus 83 p~Gta~Ai~~a~~-~i~~~~~~l-ilgDni~~~~~l~~-~l~~~~~~~~~~ti~~~~v~~------p~~yGvv~~d~~~~ 153 (292)
T Consensus 73 ~SGTERl~E~~~~la~~~d~~i~N~QGDEP~~~~~ii~~~~~nLA~~~~~~~~~a~ki~d~E~~~~PN~VK-VvlD~~~~ 151 (246)
T TIGR00466 73 NSGTERLAEVVEKLALKDDEVIVNLQGDEPLIPKEIIRQVADNLAKKNVPMAALAVKIHDAEEAFNPNAVK-VVLDSEGY 151 (246)
T ss_pred CCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEE-EEEECCCC
T ss_conf 85046899999984789885799820898765389999999988630401121122222121205997479-99707886
Q ss_pred HHHCCC-----------CCCCC----CC--CCCHHHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCEEEEEC
Q ss_conf 010013-----------33332----22--22202455410-00224322004675333333343200000132046313
Q gi|254780922|r 154 AISIEE-----------KPNNP----KS--SFAVTGIYFYD-QEVVNIARNIRPSARGELEITDVNSYYLDKGLLAVEFL 215 (292)
Q Consensus 154 i~~i~E-----------KP~~~----~s--n~a~~GiY~f~-~~i~~~~~~l~~s~rgE~eitD~~~~~l~~~~~~~~~~ 215 (292)
T Consensus 152 ~LYFSRs~IP~~RD~~~~~~~~~~~~~~D~~L~HiGIYgy~n~~~~~~~v~~~P~~LE~iE~LEQLR~Lyy~~kI~V~~~ 231 (246)
T TIGR00466 152 ALYFSRSLIPFDRDRFAKRQEVQKVQLSDALLRHIGIYGYRNAGFIKEYVAWKPSVLEEIEKLEQLRVLYYGEKIHVKIA 231 (246)
T ss_pred EEEEECCCCCCCHHHHHHHCCCCEEEHHHHHHHHHCHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 78864021542001244305510020113445442211100247999997228874024566788888760563689875
Q ss_pred CCCEEEECCCCHHHH
Q ss_conf 541256327845779
Q gi|254780922|r 216 REGSAWFDAGTPESL 230 (292)
Q Consensus 216 ~~g~~W~D~Gt~e~l 230 (292)
T Consensus 232 ~~~P-~vGvDT~EDL 245 (246)
T TIGR00466 232 QEVP-SVGVDTQEDL 245 (246)
T ss_pred ECCC-CCCCCCHHHC
T ss_conf 0378-8677862314