HHsearch alignment for GI: 254780922 and conserved domain: TIGR01207

>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase; InterPro: IPR005907 Synonym: dTDP-D-glucose synthase This group of proteins comprises a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases (2.7.7.24 from EC). It is well characterised in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. The enzyme is active as a homotetramer. dTTP + alpha-D-glucose 1-phosphate = diphosphate + dTDP-glucose The family of known and putative glucose-1-phosphate thymidyltransferases shows a deep split into a short form (see IPR005908 from INTERPRO) and a long form described by this model. The homotetrameric short form is found in numerous bacterial species that incorporate dTDP-L-rhamnose, which it helps synthesize, into the cell wall. It is subject to feedback inhibition. The long form, in contrast, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced. ; GO: 0008879 glucose-1-phosphate thymidylyltransferase activity, 0045226 extracellular polysaccharide biosynthetic process.
Probab=100.00  E-value=0  Score=495.82  Aligned_cols=286  Identities=57%  Similarity=1.012  Sum_probs=281.8

Q ss_pred             EEEEECCCCCCCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             07992488874553344389822224783747999999999789868999977765643111222222221111222333
Q gi|254780922|r    2 KGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLKEFLGSGEKWGVQFSYIEQL   81 (292)
Q Consensus         2 kaiIlAaG~GtRl~P~T~~~pK~Llpi~gkplI~~~l~~l~~~Gi~~I~ii~~~~~~~~~~~~l~~g~~~g~~i~y~~q~   81 (292)
T Consensus         1 ~Gi~laGG~Gtrl~P~t~~~skqllP~ydkPmiyyPl~~lmlaG~r~i~~i~~~~~~~~f~~llGdG~~~G~~~~y~~q~   80 (286)
T TIGR01207         1 KGIILAGGSGTRLYPITLAVSKQLLPVYDKPMIYYPLSVLMLAGIRDILIISTPEDTPRFKRLLGDGSQFGVELSYAVQP   80 (286)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHCCCCHHCEEEEEECCC
T ss_conf             92687268874012434544321031015750123189998730222013521100057898713520104578871157


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCC
Q ss_conf             32244685210111233567521321443211110000111000001110012222100012221222210001001333
Q gi|254780922|r   82 VPAGLAQSYILGAEFIGDSSSVLILGDNVFYGSDISDIFHKARARRNSATVVGCHVQNPQRYGVVEVDSSNQAISIEEKP  161 (292)
Q Consensus        82 ~p~Gta~Ai~~a~~~i~~~~~~lilgDni~~~~~l~~~l~~~~~~~~~~ti~~~~v~~p~~yGvv~~d~~~~i~~i~EKP  161 (292)
T Consensus        81 ~P~Gla~af~ig~~f~~~~~~~l~lGdn~fyG~~~~~~l~~~~~~~~Ga~vf~y~v~~P~~yGv~~f~~~~~~~~~eekP  160 (286)
T TIGR01207        81 SPDGLAQAFIIGEEFIGDDKSALVLGDNIFYGHDLSELLKRAAAREEGATVFAYQVKDPERYGVVEFDEEGRAISLEEKP  160 (286)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEECCCCCEEEEECCC
T ss_conf             86325888877688726776179960500102148999999875306857999875076412306663873178641378


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCEEEEECCCCEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf             33222222024554100022432200467533333334320000013204631354125632784577999999999988
Q gi|254780922|r  162 NNPKSSFAVTGIYFYDQEVVNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREGSAWFDAGTPESLLDTAVFVRNIE  241 (292)
Q Consensus       162 ~~~~sn~a~~GiY~f~~~i~~~~~~l~~s~rgE~eitD~~~~~l~~~~~~~~~~~~g~~W~D~Gt~e~l~~As~~i~~~e  241 (292)
T Consensus       161 ~~P~s~y~v~Gly~yd~~~~~~a~~~~~s~rGelei~~~n~~yl~~G~l~v~~~~rG~aWldtGt~~sl~~a~~f~~t~~  240 (286)
T TIGR01207       161 AKPKSNYAVTGLYFYDNRVVEIARELKPSARGELEITDLNRVYLEEGKLSVELLGRGYAWLDTGTHDSLLEASSFIETIE  240 (286)
T ss_pred             CCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCEEEHHHHCCCCEECCCHHHHHHHHHHHHHHHH
T ss_conf             88763413401110106899999731324566402888999998636502014526511000111688999999999988


Q ss_pred             HHCCCEEEEHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             8809866209999988689898999998864258848999999986
Q gi|254780922|r  242 NRLGLYVACPEEIAYRHDFINESQFFQLIDHFGNSPYGLYLRQVVE  287 (292)
Q Consensus       242 ~~~g~~i~~~ee~a~~~~~i~~~~l~~~~~~~~~~~y~~~l~~~~~  287 (292)
T Consensus       241 ~~q~~~~~~~ee~a~~~~~~~~~~~~~~a~~~~k~~yG~yl~~~~~  286 (286)
T TIGR01207       241 KRQGLKVACPEEIAFRKGWIDAEQLEELAEKLAKNGYGQYLLELLE  286 (286)
T ss_pred             HHCCEEEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             5246155414456666641037899999998886335589999829