HHsearch alignment for GI: 254780922 and conserved domain: TIGR02623
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase; InterPro: IPR013446 Glucose-1-phosphate cytidylyltransferases, also known as CDP-glucose pyrophosphorylase, are the product of the rfbF gene and produce CDP-D-glucose..
Probab=99.97 E-value=8e-32 Score=219.84 Aligned_cols=217 Identities=24% Similarity=0.366 Sum_probs=173.7
Q ss_pred CEEEEECCCCCCCCCHHHCCCCCCEEEECCEEHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCC--
Q ss_conf 907992488874553344389822224783747999999999789868999977765643111222222221111222--
Q gi|254780922|r 1 MKGIVLAGGSGTRLRPLTDLLSKQMLPIYNKPMIYYPVSTLMDAGIREILIISTPRDLPVLKEFLGSGEKWGVQFSYI-- 78 (292)
Q Consensus 1 MkaiIlAaG~GtRl~P~T~~~pK~Llpi~gkplI~~~l~~l~~~Gi~~I~ii~~~~~~~~~~~~l~~g~~~g~~i~y~-- 78 (292)
T Consensus 1 MKaViLAGGlGTRisEEt~lrPKPM~EiGgkPIlWHI~k~Y~~~Gi~~FiiC~GYkG-y~IKeyF~NY~l~~SDvT~~l~ 79 (256)
T TIGR02623 1 MKAVILAGGLGTRISEETHLRPKPMVEIGGKPILWHIMKIYSAHGIKEFIICLGYKG-YVIKEYFANYFLHMSDVTIDLE 79 (256)
T ss_pred CEEEEEECCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCEEEEEECCCC-CEEEEECCCCEEECCEEEEEEC
T ss_conf 937997178644322435358976077679637788999997528330278853433-2201001063231131678751
Q ss_pred --------CCCCC-----------CCCCCCCCCCCCCCC-CCCCCEEECCCCCCCCCCCCHHHHHCCCHHHHHCCCCCCC
Q ss_conf --------33332-----------244685210111233-5675213214432111100001110000011100122221
Q gi|254780922|r 79 --------EQLVP-----------AGLAQSYILGAEFIG-DSSSVLILGDNVFYGSDISDIFHKARARRNSATVVGCHVQ 138 (292)
Q Consensus 79 --------~q~~p-----------~Gta~Ai~~a~~~i~-~~~~~lilgDni~~~~~l~~~l~~~~~~~~~~ti~~~~v~ 138 (292)
T Consensus 80 ~n~~~~H~~~~EPW~VTLvDTG~~t~TGGRl~Rv~~~~~~d~~Fc~TYGDGv-~~~~I~~~~~~H~~~g~~AT~tAv~-- 156 (256)
T TIGR02623 80 DNTIEVHEKRAEPWRVTLVDTGESTQTGGRLKRVREYLEDDEAFCLTYGDGV-ADIDIKALIAFHRKHGKKATVTAVQ-- 156 (256)
T ss_pred CCEEEECCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEECCCC-CCCCHHHHHHHHHHCCCCEEEEEEC--
T ss_conf 5704531213897168888568776678327889998437876898715850-3325899999988629806788607--
Q ss_pred CCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCCCEEEEECCCC
Q ss_conf 00012221222210001001333332222220245541000224322004675333333343200000132046313541
Q gi|254780922|r 139 NPQRYGVVEVDSSNQAISIEEKPNNPKSSFAVTGIYFYDQEVVNIARNIRPSARGELEITDVNSYYLDKGLLAVEFLREG 218 (292)
Q Consensus 139 ~p~~yGvv~~d~~~~i~~i~EKP~~~~sn~a~~GiY~f~~~i~~~~~~l~~s~rgE~eitD~~~~~l~~~~~~~~~~~~g 218 (292)
T Consensus 157 PPGRfGaL~~~~-~~V~~F~EKP~gd-~g~iNGGFFVL~P~V~d~I~~D~~~----wE-~~~L~~L~~~g~L~a-Y~H~G 228 (256)
T TIGR02623 157 PPGRFGALELEG-ESVTSFQEKPLGD-GGLINGGFFVLNPSVLDLIDGDATV----WE-SEPLETLAQRGELSA-YEHSG 228 (256)
T ss_pred CCCCEEEEEECC-CCEEEECCCCCCC-CEEEECCEEEECCCEEEEECCCCEE----EC-CHHHHHHHHCCCCEE-EEECC
T ss_conf 888302367725-5111101474889-8168065687483202022488502----01-037899974488137-85177
Q ss_pred EEEECCCCHHHH
Q ss_conf 256327845779
Q gi|254780922|r 219 SAWFDAGTPESL 230 (292)
Q Consensus 219 ~~W~D~Gt~e~l 230 (292)
T Consensus 229 -FW~PMDTLRDk 239 (256)
T TIGR02623 229 -FWQPMDTLRDK 239 (256)
T ss_pred -CCCCCHHHHHH
T ss_conf -56852225667